Source Name	Comment [Sample_description]	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [cell type]	Characteristics [chip antibody]	Characteristics [genotype]	Characteristics [organism]	Term Source REF	Term Accession Number	Characteristics [phenotype]	Characteristics [sex]	Term Source REF	Term Accession Number	Characteristics [strain]	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Extract Name	Comment [INSTRUMENT_MODEL]	Comment [LIBRARY_SELECTION]	Comment [LIBRARY_SOURCE]	Comment [LIBRARY_STRATEGY]	Material Type	Assay Name	Comment [ENA_EXPERIMENT]	Comment [Platform_title]	Technology Type	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	FactorValue [CHIP ANTIBODY]	FactorValue [GENOTYPE]
GSM1184045 1	Jmjd2b shRNA KD in mESCs	Jmjd2b KD mESCs	Jmjd2b_KD_Nanog_replicate_2	ESC	Nanog (A300-397A), Bethyl Laboratories	Jmjd2b shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1184045 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1184045	SRX319957	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1184045_Nanog_2bKD_replicate_2_peaks.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.1.zip	Nanog (A300-397A), Bethyl Laboratories	Jmjd2b shRNA KD
GSM1184045 1	Jmjd2b shRNA KD in mESCs	Jmjd2b KD mESCs	Jmjd2b_KD_Nanog_replicate_2	ESC	Nanog (A300-397A), Bethyl Laboratories	Jmjd2b shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1184045 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1184045	SRX319957	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1184045_Nanog_2bKD_replicate_2_binsize_200_stepsize_50_fixedstep_rpkm.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.1.zip	Nanog (A300-397A), Bethyl Laboratories	Jmjd2b shRNA KD
GSM1184045 1	Jmjd2b shRNA KD in mESCs	Jmjd2b KD mESCs	Jmjd2b_KD_Nanog_replicate_2	ESC	Nanog (A300-397A), Bethyl Laboratories	Jmjd2b shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1184045 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1184045	SRX319957	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1184045_Nanog_2bKD_replicate_2.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.2.zip	Nanog (A300-397A), Bethyl Laboratories	Jmjd2b shRNA KD
GSM1059037 1	Jmjd2c shRNA KD in mESCs	Jmjd2c KD mESCs	Jmjd2c_KD_Spt5	ESC	Spt5 (H-300) (sc-28678),  Santa Cruz Biotechnology	Jmjd2c shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059037 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059037	SRX213834	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059037_Spt5_2cKD_pd10_peaks.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.2.zip	Spt5 (H-300) (sc-28678),  Santa Cruz Biotechnology	Jmjd2c shRNA KD
GSM1059037 1	Jmjd2c shRNA KD in mESCs	Jmjd2c KD mESCs	Jmjd2c_KD_Spt5	ESC	Spt5 (H-300) (sc-28678),  Santa Cruz Biotechnology	Jmjd2c shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059037 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059037	SRX213834	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059037_Spt5_2cKD_binsize_200_stepsize_50_fixedstep_rpkm.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.3.zip	Spt5 (H-300) (sc-28678),  Santa Cruz Biotechnology	Jmjd2c shRNA KD
GSM1059037 1	Jmjd2c shRNA KD in mESCs	Jmjd2c KD mESCs	Jmjd2c_KD_Spt5	ESC	Spt5 (H-300) (sc-28678),  Santa Cruz Biotechnology	Jmjd2c shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059037 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059037	SRX213834	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059037_Spt5_2cKD_6_19_12.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.4.zip	Spt5 (H-300) (sc-28678),  Santa Cruz Biotechnology	Jmjd2c shRNA KD
GSM1059036 1	Jmjd2c shRNA KD in mESCs	Jmjd2c KD mESCs	Jmjd2c_KD_RNA Pol II_Ser5p	ESC	RNA Pol II Ser5p, CTD4H8 (MMS-128P), Covance	Jmjd2c shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059036 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059036	SRX213833	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059036_Pol2_S5P_2cKD_pd10_peaks.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.4.zip	RNA Pol II Ser5p, CTD4H8 (MMS-128P), Covance	Jmjd2c shRNA KD
GSM1059036 1	Jmjd2c shRNA KD in mESCs	Jmjd2c KD mESCs	Jmjd2c_KD_RNA Pol II_Ser5p	ESC	RNA Pol II Ser5p, CTD4H8 (MMS-128P), Covance	Jmjd2c shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059036 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059036	SRX213833	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059036_Pol2_S5P_2cKD_binsize_200_stepsize_50_fixedstep_rpkm.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.4.zip	RNA Pol II Ser5p, CTD4H8 (MMS-128P), Covance	Jmjd2c shRNA KD
GSM1059036 1	Jmjd2c shRNA KD in mESCs	Jmjd2c KD mESCs	Jmjd2c_KD_RNA Pol II_Ser5p	ESC	RNA Pol II Ser5p, CTD4H8 (MMS-128P), Covance	Jmjd2c shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059036 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059036	SRX213833	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059036_Pol2_S5P_2cKD_6_19_12.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.5.zip	RNA Pol II Ser5p, CTD4H8 (MMS-128P), Covance	Jmjd2c shRNA KD
GSM1059035 1	Jmjd2c shRNA KD in mESCs	Jmjd2c KD mESCs	Jmjd2c_KD_RNA Pol II_Ser2p	ESC	RNA Pol II Ser2p, clone 3E10 (04-1571), Millipore	Jmjd2c shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059035 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059035	SRX213832	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059035_Pol2_S2P_2cKD_092012_pd3_peaks.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.5.zip	RNA Pol II Ser2p, clone 3E10 (04-1571), Millipore	Jmjd2c shRNA KD
GSM1059035 1	Jmjd2c shRNA KD in mESCs	Jmjd2c KD mESCs	Jmjd2c_KD_RNA Pol II_Ser2p	ESC	RNA Pol II Ser2p, clone 3E10 (04-1571), Millipore	Jmjd2c shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059035 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059035	SRX213832	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059035_Pol2_S2P_2cKD_092012_binsize_200_stepsize_50_fixedstep_rpkm.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.6.zip	RNA Pol II Ser2p, clone 3E10 (04-1571), Millipore	Jmjd2c shRNA KD
GSM1059035 1	Jmjd2c shRNA KD in mESCs	Jmjd2c KD mESCs	Jmjd2c_KD_RNA Pol II_Ser2p	ESC	RNA Pol II Ser2p, clone 3E10 (04-1571), Millipore	Jmjd2c shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059035 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059035	SRX213832	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059035_Pol2_S2P_2cKD_092012.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.7.zip	RNA Pol II Ser2p, clone 3E10 (04-1571), Millipore	Jmjd2c shRNA KD
GSM1059034 1	Jmjd2c shRNA KD in mESCs	Jmjd2c KD mESCs	Jmjd2c_KD_RNA Pol II 8WG16	ESC	RNA Pol II 8WG16 (MMS-126R), Covance	Jmjd2c shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059034 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059034	SRX213831	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059034_Pol2_2cKD_pd10_peaks.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.7.zip	RNA Pol II 8WG16 (MMS-126R), Covance	Jmjd2c shRNA KD
GSM1059034 1	Jmjd2c shRNA KD in mESCs	Jmjd2c KD mESCs	Jmjd2c_KD_RNA Pol II 8WG16	ESC	RNA Pol II 8WG16 (MMS-126R), Covance	Jmjd2c shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059034 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059034	SRX213831	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059034_Pol2_2cKD_binsize_200_stepsize_50_fixedstep_rpkm.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.7.zip	RNA Pol II 8WG16 (MMS-126R), Covance	Jmjd2c shRNA KD
GSM1059034 1	Jmjd2c shRNA KD in mESCs	Jmjd2c KD mESCs	Jmjd2c_KD_RNA Pol II 8WG16	ESC	RNA Pol II 8WG16 (MMS-126R), Covance	Jmjd2c shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059034 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059034	SRX213831	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059034_Pol2_2cKD_6_19_12.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.8.zip	RNA Pol II 8WG16 (MMS-126R), Covance	Jmjd2c shRNA KD
GSM1059033 1	Jmjd2c shRNA KD in mESCs	Jmjd2c KD mESCs	Jmjd2c_KD_Oct4	ESC	Oct4(N-19)(sc-8628), Santa Cruz Biotechnology	Jmjd2c shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059033 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059033	SRX213830	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059033_Oct4_2cKD_pd10_peaks.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.8.zip	Oct4(N-19)(sc-8628), Santa Cruz Biotechnology	Jmjd2c shRNA KD
GSM1059033 1	Jmjd2c shRNA KD in mESCs	Jmjd2c KD mESCs	Jmjd2c_KD_Oct4	ESC	Oct4(N-19)(sc-8628), Santa Cruz Biotechnology	Jmjd2c shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059033 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059033	SRX213830	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059033_Oct4_2cKD_binsize_200_stepsize_50_fixedstep_rpkm.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.9.zip	Oct4(N-19)(sc-8628), Santa Cruz Biotechnology	Jmjd2c shRNA KD
GSM1059033 1	Jmjd2c shRNA KD in mESCs	Jmjd2c KD mESCs	Jmjd2c_KD_Oct4	ESC	Oct4(N-19)(sc-8628), Santa Cruz Biotechnology	Jmjd2c shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059033 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059033	SRX213830	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059033_Oct4_2cKD.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.9.zip	Oct4(N-19)(sc-8628), Santa Cruz Biotechnology	Jmjd2c shRNA KD
GSM1059032 1	Jmjd2c shRNA KD in mESCs	Jmjd2c KD mESCs	Jmjd2c_KD_Nanog	ESC	Nanog (A300-397A), Bethyl Laboratories	Jmjd2c shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059032 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059032	SRX213829	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059032_Nanog_2cKD_pd10_peaks.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.9.zip	Nanog (A300-397A), Bethyl Laboratories	Jmjd2c shRNA KD
GSM1059032 1	Jmjd2c shRNA KD in mESCs	Jmjd2c KD mESCs	Jmjd2c_KD_Nanog	ESC	Nanog (A300-397A), Bethyl Laboratories	Jmjd2c shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059032 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059032	SRX213829	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059032_Nanog_2cKD_binsize_200_stepsize_50_fixedstep_rpkm.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.10.zip	Nanog (A300-397A), Bethyl Laboratories	Jmjd2c shRNA KD
GSM1059032 1	Jmjd2c shRNA KD in mESCs	Jmjd2c KD mESCs	Jmjd2c_KD_Nanog	ESC	Nanog (A300-397A), Bethyl Laboratories	Jmjd2c shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059032 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059032	SRX213829	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059032_Nanog_2cKD.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.10.zip	Nanog (A300-397A), Bethyl Laboratories	Jmjd2c shRNA KD
GSM1059031 1	Jmjd2c shRNA KD in mESCs	Jmjd2c KD mESCs	Jmjd2c_KD_cMyc	ESC	cMyc (9402), Cell signaling	Jmjd2c shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059031 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059031	SRX213828	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059031_Myc_2cKD_pd5_peaks.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.10.zip	cMyc (9402), Cell signaling	Jmjd2c shRNA KD
GSM1059031 1	Jmjd2c shRNA KD in mESCs	Jmjd2c KD mESCs	Jmjd2c_KD_cMyc	ESC	cMyc (9402), Cell signaling	Jmjd2c shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059031 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059031	SRX213828	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059031_Myc_2cKD_binsize_200_stepsize_50_fixedstep_rpkm.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.11.zip	cMyc (9402), Cell signaling	Jmjd2c shRNA KD
GSM1059031 1	Jmjd2c shRNA KD in mESCs	Jmjd2c KD mESCs	Jmjd2c_KD_cMyc	ESC	cMyc (9402), Cell signaling	Jmjd2c shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059031 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059031	SRX213828	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059031_Myc_2cKD.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.11.zip	cMyc (9402), Cell signaling	Jmjd2c shRNA KD
GSM1059030 1	Jmjd2c shRNA KD in mESCs	Jmjd2c KD mESCs	Jmjd2c_KD_H3K9me3	ESC	H3K9me3 (ab8898), Abcam	Jmjd2c shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059030 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059030	SRX213827	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059030_H3K9me3_2cKD_pd5_peaks.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.11.zip	H3K9me3 (ab8898), Abcam	Jmjd2c shRNA KD
GSM1059030 1	Jmjd2c shRNA KD in mESCs	Jmjd2c KD mESCs	Jmjd2c_KD_H3K9me3	ESC	H3K9me3 (ab8898), Abcam	Jmjd2c shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059030 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059030	SRX213827	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059030_H3K9me3_2cKD_binsize_200_stepsize_50_fixedstep_rpkm.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.12.zip	H3K9me3 (ab8898), Abcam	Jmjd2c shRNA KD
GSM1059030 1	Jmjd2c shRNA KD in mESCs	Jmjd2c KD mESCs	Jmjd2c_KD_H3K9me3	ESC	H3K9me3 (ab8898), Abcam	Jmjd2c shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059030 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059030	SRX213827	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059030_H3K9me3_2cKD.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.13.zip	H3K9me3 (ab8898), Abcam	Jmjd2c shRNA KD
GSM1059029 1	Jmjd2c shRNA KD in mESCs	Jmjd2c KD mESCs	Jmjd2c_KD_H3K4me3	ESC	H3K4me3 (ab1012), Abcam	Jmjd2c shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059029 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059029	SRX213826	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059029_H3K4me3_2cKD_pd5_peaks.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.13.zip	H3K4me3 (ab1012), Abcam	Jmjd2c shRNA KD
GSM1059029 1	Jmjd2c shRNA KD in mESCs	Jmjd2c KD mESCs	Jmjd2c_KD_H3K4me3	ESC	H3K4me3 (ab1012), Abcam	Jmjd2c shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059029 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059029	SRX213826	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059029_H3K4me3_2cKD_binsize_200_stepsize_50_fixedstep_rpkm.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.13.zip	H3K4me3 (ab1012), Abcam	Jmjd2c shRNA KD
GSM1059029 1	Jmjd2c shRNA KD in mESCs	Jmjd2c KD mESCs	Jmjd2c_KD_H3K4me3	ESC	H3K4me3 (ab1012), Abcam	Jmjd2c shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059029 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059029	SRX213826	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059029_H3K4me3_2cKD.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.14.zip	H3K4me3 (ab1012), Abcam	Jmjd2c shRNA KD
GSM1059028 1	Jmjd2c shRNA KD in mESCs	Jmjd2c KD mESCs	Jmjd2c_KD_H3K36me3	ESC	H3K36me3 (ab9050), Abcam	Jmjd2c shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059028 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059028	SRX213825	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059028_H3K36me3_2cKD_pd6_peaks.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.14.zip	H3K36me3 (ab9050), Abcam	Jmjd2c shRNA KD
GSM1059028 1	Jmjd2c shRNA KD in mESCs	Jmjd2c KD mESCs	Jmjd2c_KD_H3K36me3	ESC	H3K36me3 (ab9050), Abcam	Jmjd2c shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059028 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059028	SRX213825	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059028_H3K36me3_2cKD_binsize_200_stepsize_50_fixedstep_rpkm.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.15.zip	H3K36me3 (ab9050), Abcam	Jmjd2c shRNA KD
GSM1059028 1	Jmjd2c shRNA KD in mESCs	Jmjd2c KD mESCs	Jmjd2c_KD_H3K36me3	ESC	H3K36me3 (ab9050), Abcam	Jmjd2c shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059028 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059028	SRX213825	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059028_H3K36me3_2cKD.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.16.zip	H3K36me3 (ab9050), Abcam	Jmjd2c shRNA KD
GSM1059027 1	Jmjd2c shRNA KD in mESCs	Jmjd2c KD mESCs	Jmjd2c_KD_H3K27me3	ESC	H3K27me3 (ab6002), Abcam	Jmjd2c shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059027 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059027	SRX213824	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059027_H3K27me3_2cKD_pd5_peaks.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.16.zip	H3K27me3 (ab6002), Abcam	Jmjd2c shRNA KD
GSM1059027 1	Jmjd2c shRNA KD in mESCs	Jmjd2c KD mESCs	Jmjd2c_KD_H3K27me3	ESC	H3K27me3 (ab6002), Abcam	Jmjd2c shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059027 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059027	SRX213824	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059027_H3K27me3_2cKD_binsize_200_stepsize_50_fixedstep_rpkm.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.16.zip	H3K27me3 (ab6002), Abcam	Jmjd2c shRNA KD
GSM1059027 1	Jmjd2c shRNA KD in mESCs	Jmjd2c KD mESCs	Jmjd2c_KD_H3K27me3	ESC	H3K27me3 (ab6002), Abcam	Jmjd2c shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059027 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059027	SRX213824	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059027_H3K27me3_2cKD.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.17.zip	H3K27me3 (ab6002), Abcam	Jmjd2c shRNA KD
GSM1059026 1	Jmjd2c shRNA KD in mESCs	Jmjd2c KD mESCs	Jmjd2c_KD_Ezh2	ESC	ChIPAb+ Ezh2, clone AC22 (17-662), Millipore	Jmjd2c shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059026 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059026	SRX213823	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059026_Ezh2_2cKD_pd5_peaks.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.17.zip	ChIPAb+ Ezh2, clone AC22 (17-662), Millipore	Jmjd2c shRNA KD
GSM1059026 1	Jmjd2c shRNA KD in mESCs	Jmjd2c KD mESCs	Jmjd2c_KD_Ezh2	ESC	ChIPAb+ Ezh2, clone AC22 (17-662), Millipore	Jmjd2c shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059026 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059026	SRX213823	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059026_Ezh2_2cKD_binsize_200_stepsize_50_fixedstep_rpkm.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.18.zip	ChIPAb+ Ezh2, clone AC22 (17-662), Millipore	Jmjd2c shRNA KD
GSM1059026 1	Jmjd2c shRNA KD in mESCs	Jmjd2c KD mESCs	Jmjd2c_KD_Ezh2	ESC	ChIPAb+ Ezh2, clone AC22 (17-662), Millipore	Jmjd2c shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059026 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059026	SRX213823	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059026_Ezh2_2cKD.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.18.zip	ChIPAb+ Ezh2, clone AC22 (17-662), Millipore	Jmjd2c shRNA KD
GSM1059025 1	Jmjd2c shRNA KD in mESCs	Jmjd2c KD mESCs	Jmjd2c_KD_Ctr9	ESC	Ctr9 (A301-395A), Bethyl Laboratories	Jmjd2c shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059025 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059025	SRX213822	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059025_Ctr9_2cKD_pd4_peaks.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.18.zip	Ctr9 (A301-395A), Bethyl Laboratories	Jmjd2c shRNA KD
GSM1059025 1	Jmjd2c shRNA KD in mESCs	Jmjd2c KD mESCs	Jmjd2c_KD_Ctr9	ESC	Ctr9 (A301-395A), Bethyl Laboratories	Jmjd2c shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059025 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059025	SRX213822	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059025_Ctr9_2cKD_binsize_200_stepsize_50_fixedstep_rpkm.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.19.zip	Ctr9 (A301-395A), Bethyl Laboratories	Jmjd2c shRNA KD
GSM1059025 1	Jmjd2c shRNA KD in mESCs	Jmjd2c KD mESCs	Jmjd2c_KD_Ctr9	ESC	Ctr9 (A301-395A), Bethyl Laboratories	Jmjd2c shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059025 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059025	SRX213822	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059025_Ctr9_2cKD.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.20.zip	Ctr9 (A301-395A), Bethyl Laboratories	Jmjd2c shRNA KD
GSM1059024 1	Jmjd2b shRNA KD in mESCs	Jmjd2b KD mESCs	Jmjd2b_KD_Oct4	ESC	Oct4(N-19)(sc-8628), Santa Cruz Biotechnology	Jmjd2b shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059024 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059024	SRX213821	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059024_Oct4_2bKD_pd10_peaks.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.20.zip	Oct4(N-19)(sc-8628), Santa Cruz Biotechnology	Jmjd2b shRNA KD
GSM1059024 1	Jmjd2b shRNA KD in mESCs	Jmjd2b KD mESCs	Jmjd2b_KD_Oct4	ESC	Oct4(N-19)(sc-8628), Santa Cruz Biotechnology	Jmjd2b shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059024 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059024	SRX213821	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059024_Oct4_2bKD_binsize_200_stepsize_50_fixedstep_rpkm.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.20.zip	Oct4(N-19)(sc-8628), Santa Cruz Biotechnology	Jmjd2b shRNA KD
GSM1059024 1	Jmjd2b shRNA KD in mESCs	Jmjd2b KD mESCs	Jmjd2b_KD_Oct4	ESC	Oct4(N-19)(sc-8628), Santa Cruz Biotechnology	Jmjd2b shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059024 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059024	SRX213821	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059024_Oct4_2bKD.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.21.zip	Oct4(N-19)(sc-8628), Santa Cruz Biotechnology	Jmjd2b shRNA KD
GSM1059023 1	Jmjd2b shRNA KD in mESCs	Jmjd2b KD mESCs	Jmjd2b_KD_Nanog	ESC	Nanog (A300-397A), Bethyl Laboratories	Jmjd2b shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059023 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059023	SRX213820	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059023_Nanog_2bKD_pd10_peaks.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.21.zip	Nanog (A300-397A), Bethyl Laboratories	Jmjd2b shRNA KD
GSM1059023 1	Jmjd2b shRNA KD in mESCs	Jmjd2b KD mESCs	Jmjd2b_KD_Nanog	ESC	Nanog (A300-397A), Bethyl Laboratories	Jmjd2b shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059023 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059023	SRX213820	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059023_Nanog_2bKD_binsize_200_stepsize_50_fixedstep_rpkm.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.22.zip	Nanog (A300-397A), Bethyl Laboratories	Jmjd2b shRNA KD
GSM1059023 1	Jmjd2b shRNA KD in mESCs	Jmjd2b KD mESCs	Jmjd2b_KD_Nanog	ESC	Nanog (A300-397A), Bethyl Laboratories	Jmjd2b shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059023 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059023	SRX213820	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059023_Nanog_2bKD.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.23.zip	Nanog (A300-397A), Bethyl Laboratories	Jmjd2b shRNA KD
GSM1059022 1	Jmjd2b shRNA KD in mESCs	Jmjd2b KD mESCs	Jmjd2b_KD_cMyc	ESC	cMyc (9402), Cell signaling	Jmjd2b shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059022 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059022	SRX213819	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059022_Myc_2bKD_pd5_peaks.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.23.zip	cMyc (9402), Cell signaling	Jmjd2b shRNA KD
GSM1059022 1	Jmjd2b shRNA KD in mESCs	Jmjd2b KD mESCs	Jmjd2b_KD_cMyc	ESC	cMyc (9402), Cell signaling	Jmjd2b shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059022 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059022	SRX213819	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059022_Myc_2bKD_binsize_200_stepsize_50_fixedstep_rpkm.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.23.zip	cMyc (9402), Cell signaling	Jmjd2b shRNA KD
GSM1059022 1	Jmjd2b shRNA KD in mESCs	Jmjd2b KD mESCs	Jmjd2b_KD_cMyc	ESC	cMyc (9402), Cell signaling	Jmjd2b shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059022 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059022	SRX213819	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059022_Myc_2bKD.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.24.zip	cMyc (9402), Cell signaling	Jmjd2b shRNA KD
GSM1059021 1	Jmjd2b shRNA KD in mESCs	Jmjd2b KD mESCs	Jmjd2b_KD_H3K9me3	ESC	H3K9me3 (ab8898), Abcam	Jmjd2b shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059021 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059021	SRX213818	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059021_H3K9me3_2bKD_pd5_peaks.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.24.zip	H3K9me3 (ab8898), Abcam	Jmjd2b shRNA KD
GSM1059021 1	Jmjd2b shRNA KD in mESCs	Jmjd2b KD mESCs	Jmjd2b_KD_H3K9me3	ESC	H3K9me3 (ab8898), Abcam	Jmjd2b shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059021 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059021	SRX213818	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059021_H3K9me3_2bKD_binsize_200_stepsize_50_fixedstep_rpkm.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.24.zip	H3K9me3 (ab8898), Abcam	Jmjd2b shRNA KD
GSM1059021 1	Jmjd2b shRNA KD in mESCs	Jmjd2b KD mESCs	Jmjd2b_KD_H3K9me3	ESC	H3K9me3 (ab8898), Abcam	Jmjd2b shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059021 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059021	SRX213818	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059021_H3K9me3_2bKD.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.25.zip	H3K9me3 (ab8898), Abcam	Jmjd2b shRNA KD
GSM1059020 1	Jmjd2b shRNA KD in mESCs	Jmjd2b KD mESCs	Jmjd2b_KD_H3K4me3	ESC	H3K4me3 (ab1012), Abcam	Jmjd2b shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059020 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059020	SRX213817	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059020_H3K4me3_2bKD_pd5_peaks.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.25.zip	H3K4me3 (ab1012), Abcam	Jmjd2b shRNA KD
GSM1059020 1	Jmjd2b shRNA KD in mESCs	Jmjd2b KD mESCs	Jmjd2b_KD_H3K4me3	ESC	H3K4me3 (ab1012), Abcam	Jmjd2b shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059020 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059020	SRX213817	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059020_H3K4me3_2bKD_binsize_200_stepsize_50_fixedstep_rpkm.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.25.zip	H3K4me3 (ab1012), Abcam	Jmjd2b shRNA KD
GSM1059020 1	Jmjd2b shRNA KD in mESCs	Jmjd2b KD mESCs	Jmjd2b_KD_H3K4me3	ESC	H3K4me3 (ab1012), Abcam	Jmjd2b shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059020 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059020	SRX213817	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059020_H3K4me3_2bKD.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.26.zip	H3K4me3 (ab1012), Abcam	Jmjd2b shRNA KD
GSM1059019 1	Jmjd2b shRNA KD in mESCs	Jmjd2b KD mESCs	Jmjd2b_KD_H3K36me3	ESC	H3K36me3 (ab9050), Abcam	Jmjd2b shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059019 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059019	SRX213816	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059019_H3K36me3_2bKD_pd6_peaks.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.26.zip	H3K36me3 (ab9050), Abcam	Jmjd2b shRNA KD
GSM1059019 1	Jmjd2b shRNA KD in mESCs	Jmjd2b KD mESCs	Jmjd2b_KD_H3K36me3	ESC	H3K36me3 (ab9050), Abcam	Jmjd2b shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059019 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059019	SRX213816	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059019_H3K36me3_2bKD_binsize_200_stepsize_50_fixedstep_rpkm.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.26.zip	H3K36me3 (ab9050), Abcam	Jmjd2b shRNA KD
GSM1059019 1	Jmjd2b shRNA KD in mESCs	Jmjd2b KD mESCs	Jmjd2b_KD_H3K36me3	ESC	H3K36me3 (ab9050), Abcam	Jmjd2b shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059019 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059019	SRX213816	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059019_H3K36me3_2bKD.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.27.zip	H3K36me3 (ab9050), Abcam	Jmjd2b shRNA KD
GSM1059018 1	Jmjd2b shRNA KD in mESCs	Jmjd2b KD mESCs	Jmjd2b_KD_H3K27me3	ESC	H3K27me3 (ab6002), Abcam	Jmjd2b shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059018 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059018	SRX213815	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059018_H3K27me3_2bKD_pd5_peaks.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.27.zip	H3K27me3 (ab6002), Abcam	Jmjd2b shRNA KD
GSM1059018 1	Jmjd2b shRNA KD in mESCs	Jmjd2b KD mESCs	Jmjd2b_KD_H3K27me3	ESC	H3K27me3 (ab6002), Abcam	Jmjd2b shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059018 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059018	SRX213815	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059018_H3K27me3_2bKD_binsize_200_stepsize_50_fixedstep_rpkm.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.27.zip	H3K27me3 (ab6002), Abcam	Jmjd2b shRNA KD
GSM1059018 1	Jmjd2b shRNA KD in mESCs	Jmjd2b KD mESCs	Jmjd2b_KD_H3K27me3	ESC	H3K27me3 (ab6002), Abcam	Jmjd2b shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059018 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059018	SRX213815	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059018_H3K27me3_2bKD.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.28.zip	H3K27me3 (ab6002), Abcam	Jmjd2b shRNA KD
GSM1059017 1	Jmjd2b shRNA KD in mESCs	Jmjd2b KD mESCs	Jmjd2b_KD_H3K27ac	ESC	H3K27ac (ab4729), Abcam	Jmjd2b shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059017 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059017	SRX213814	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059017_K27ac_2bKD_pd10_peaks.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.28.zip	H3K27ac (ab4729), Abcam	Jmjd2b shRNA KD
GSM1059017 1	Jmjd2b shRNA KD in mESCs	Jmjd2b KD mESCs	Jmjd2b_KD_H3K27ac	ESC	H3K27ac (ab4729), Abcam	Jmjd2b shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059017 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059017	SRX213814	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059017_K27ac_2bKD_binsize_200_stepsize_50_fixedstep_rpkm.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.29.zip	H3K27ac (ab4729), Abcam	Jmjd2b shRNA KD
GSM1059017 1	Jmjd2b shRNA KD in mESCs	Jmjd2b KD mESCs	Jmjd2b_KD_H3K27ac	ESC	H3K27ac (ab4729), Abcam	Jmjd2b shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059017 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059017	SRX213814	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059017_K27ac_2bKD_6_19_12.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.30.zip	H3K27ac (ab4729), Abcam	Jmjd2b shRNA KD
GSM1059016 1	Anti-GFP shRNA KD in mESCs	Anti-GFP KD mESCs	AntiGFP_KD_Spt5	ESC	Spt5 (H-300) (sc-28678),  Santa Cruz Biotechnology	Anti-GFP shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059016 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059016	SRX213813	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059016_Spt5_antiGFP_pd10_peaks.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.30.zip	Spt5 (H-300) (sc-28678),  Santa Cruz Biotechnology	Anti-GFP shRNA KD
GSM1059016 1	Anti-GFP shRNA KD in mESCs	Anti-GFP KD mESCs	AntiGFP_KD_Spt5	ESC	Spt5 (H-300) (sc-28678),  Santa Cruz Biotechnology	Anti-GFP shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059016 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059016	SRX213813	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059016_Spt5_AntiGFP_binsize_200_stepsize_50_fixedstep_rpkm.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.30.zip	Spt5 (H-300) (sc-28678),  Santa Cruz Biotechnology	Anti-GFP shRNA KD
GSM1059016 1	Anti-GFP shRNA KD in mESCs	Anti-GFP KD mESCs	AntiGFP_KD_Spt5	ESC	Spt5 (H-300) (sc-28678),  Santa Cruz Biotechnology	Anti-GFP shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059016 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059016	SRX213813	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059016_Spt5_AntiGFP_6_19_12.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.31.zip	Spt5 (H-300) (sc-28678),  Santa Cruz Biotechnology	Anti-GFP shRNA KD
GSM1059015 1	Anti-GFP shRNA KD in mESCs	Anti-GFP KD mESCs	AntiGFP_KD_RNA Pol II_Ser5p	ESC	RNA Pol II Ser5p, CTD4H8 (MMS-128P), Covance	Anti-GFP shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059015 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059015	SRX213812	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059015_Pol2_S5P_antiGFP_pd10_peaks.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.31.zip	RNA Pol II Ser5p, CTD4H8 (MMS-128P), Covance	Anti-GFP shRNA KD
GSM1059015 1	Anti-GFP shRNA KD in mESCs	Anti-GFP KD mESCs	AntiGFP_KD_RNA Pol II_Ser5p	ESC	RNA Pol II Ser5p, CTD4H8 (MMS-128P), Covance	Anti-GFP shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059015 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059015	SRX213812	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059015_Pol2_S5P_AntiGFP_binsize_200_stepsize_50_fixedstep_rpkm.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.32.zip	RNA Pol II Ser5p, CTD4H8 (MMS-128P), Covance	Anti-GFP shRNA KD
GSM1059015 1	Anti-GFP shRNA KD in mESCs	Anti-GFP KD mESCs	AntiGFP_KD_RNA Pol II_Ser5p	ESC	RNA Pol II Ser5p, CTD4H8 (MMS-128P), Covance	Anti-GFP shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059015 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059015	SRX213812	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059015_Pol2_S5P_AntiGFP_6_19_12.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.33.zip	RNA Pol II Ser5p, CTD4H8 (MMS-128P), Covance	Anti-GFP shRNA KD
GSM1059014 1	Anti-GFP shRNA KD in mESCs	Anti-GFP KD mESCs	AntiGFP_KD_RNA Pol II_Ser2p	ESC	RNA Pol II Ser2p, clone 3E10 (04-1571), Millipore	Anti-GFP shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059014 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059014	SRX213811	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059014_Pol2_S2P_AntiGFP_092012_pd3_peaks.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.33.zip	RNA Pol II Ser2p, clone 3E10 (04-1571), Millipore	Anti-GFP shRNA KD
GSM1059014 1	Anti-GFP shRNA KD in mESCs	Anti-GFP KD mESCs	AntiGFP_KD_RNA Pol II_Ser2p	ESC	RNA Pol II Ser2p, clone 3E10 (04-1571), Millipore	Anti-GFP shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059014 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059014	SRX213811	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059014_Pol2_S2P_AntiGFP_092012_binsize_200_stepsize_50_fixedstep_rpkm.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.33.zip	RNA Pol II Ser2p, clone 3E10 (04-1571), Millipore	Anti-GFP shRNA KD
GSM1059014 1	Anti-GFP shRNA KD in mESCs	Anti-GFP KD mESCs	AntiGFP_KD_RNA Pol II_Ser2p	ESC	RNA Pol II Ser2p, clone 3E10 (04-1571), Millipore	Anti-GFP shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059014 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059014	SRX213811	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059014_Pol2_S2P_AntiGFP_092012.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.34.zip	RNA Pol II Ser2p, clone 3E10 (04-1571), Millipore	Anti-GFP shRNA KD
GSM1059013 1	Anti-GFP shRNA KD in mESCs	Anti-GFP KD mESCs	AntiGFP_KD_RNA Pol II 8WG16	ESC	RNA Pol II 8WG16 (MMS-126R), Covance	Anti-GFP shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059013 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059013	SRX213810	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059013_Pol2_AntiGFP_pd10_peaks.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.34.zip	RNA Pol II 8WG16 (MMS-126R), Covance	Anti-GFP shRNA KD
GSM1059013 1	Anti-GFP shRNA KD in mESCs	Anti-GFP KD mESCs	AntiGFP_KD_RNA Pol II 8WG16	ESC	RNA Pol II 8WG16 (MMS-126R), Covance	Anti-GFP shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059013 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059013	SRX213810	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059013_Pol2_AntiGFP_binsize_200_stepsize_50_fixedstep_rpkm.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.35.zip	RNA Pol II 8WG16 (MMS-126R), Covance	Anti-GFP shRNA KD
GSM1059013 1	Anti-GFP shRNA KD in mESCs	Anti-GFP KD mESCs	AntiGFP_KD_RNA Pol II 8WG16	ESC	RNA Pol II 8WG16 (MMS-126R), Covance	Anti-GFP shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059013 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059013	SRX213810	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059013_Pol2_AntiGFP_Pol2_6_19_12.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.36.zip	RNA Pol II 8WG16 (MMS-126R), Covance	Anti-GFP shRNA KD
GSM1059012 1	Anti-GFP shRNA KD in mESCs	Anti-GFP KD mESCs	AntiGFP_KD_Oct4	ESC	Oct4(N-19)(sc-8628), Santa Cruz Biotechnology	Anti-GFP shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059012 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059012	SRX213809	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059012_Oct4_antiGFP_pd10_peaks.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.36.zip	Oct4(N-19)(sc-8628), Santa Cruz Biotechnology	Anti-GFP shRNA KD
GSM1059012 1	Anti-GFP shRNA KD in mESCs	Anti-GFP KD mESCs	AntiGFP_KD_Oct4	ESC	Oct4(N-19)(sc-8628), Santa Cruz Biotechnology	Anti-GFP shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059012 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059012	SRX213809	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059012_Oct4_antiGFP_binsize_200_stepsize_50_fixedstep_rpkm.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.36.zip	Oct4(N-19)(sc-8628), Santa Cruz Biotechnology	Anti-GFP shRNA KD
GSM1059012 1	Anti-GFP shRNA KD in mESCs	Anti-GFP KD mESCs	AntiGFP_KD_Oct4	ESC	Oct4(N-19)(sc-8628), Santa Cruz Biotechnology	Anti-GFP shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059012 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059012	SRX213809	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059012_Oct4_antiGFP.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.37.zip	Oct4(N-19)(sc-8628), Santa Cruz Biotechnology	Anti-GFP shRNA KD
GSM1059011 1	Anti-GFP shRNA KD in mESCs	Anti-GFP KD mESCs	AntiGFP_KD_Nanog	ESC	Nanog (A300-397A), Bethyl Laboratories	Anti-GFP shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059011 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059011	SRX213808	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059011_Nanog_antiGFP_pd10_peaks.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.37.zip	Nanog (A300-397A), Bethyl Laboratories	Anti-GFP shRNA KD
GSM1059011 1	Anti-GFP shRNA KD in mESCs	Anti-GFP KD mESCs	AntiGFP_KD_Nanog	ESC	Nanog (A300-397A), Bethyl Laboratories	Anti-GFP shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059011 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059011	SRX213808	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059011_Nanog_antiGFP_binsize_200_stepsize_50_fixedstep_rpkm.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.37.zip	Nanog (A300-397A), Bethyl Laboratories	Anti-GFP shRNA KD
GSM1059011 1	Anti-GFP shRNA KD in mESCs	Anti-GFP KD mESCs	AntiGFP_KD_Nanog	ESC	Nanog (A300-397A), Bethyl Laboratories	Anti-GFP shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059011 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059011	SRX213808	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059011_Nanog_antiGFP.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.38.zip	Nanog (A300-397A), Bethyl Laboratories	Anti-GFP shRNA KD
GSM1059010 1	Anti-GFP shRNA KD in mESCs	Anti-GFP KD mESCs	AntiGFP_KD_cMyc	ESC	cMyc (9402), Cell signaling	Anti-GFP shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059010 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059010	SRX213807	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059010_Myc_AntiGFP_pd5_peaks.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.38.zip	cMyc (9402), Cell signaling	Anti-GFP shRNA KD
GSM1059010 1	Anti-GFP shRNA KD in mESCs	Anti-GFP KD mESCs	AntiGFP_KD_cMyc	ESC	cMyc (9402), Cell signaling	Anti-GFP shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059010 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059010	SRX213807	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059010_Myc_AntiGFP_binsize_200_stepsize_50_fixedstep_rpkm.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.38.zip	cMyc (9402), Cell signaling	Anti-GFP shRNA KD
GSM1059010 1	Anti-GFP shRNA KD in mESCs	Anti-GFP KD mESCs	AntiGFP_KD_cMyc	ESC	cMyc (9402), Cell signaling	Anti-GFP shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059010 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059010	SRX213807	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059010_Myc_AntiGFP.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.38.zip	cMyc (9402), Cell signaling	Anti-GFP shRNA KD
GSM1059009 1	Anti-GFP shRNA KD in mESCs	Anti-GFP KD mESCs	AntiGFP_KD_H3K9me3	ESC	H3K9me3 (ab8898), Abcam	Anti-GFP shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059009 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059009	SRX213806	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059009_H3K9me3_antiGFP_pd5_peaks.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.38.zip	H3K9me3 (ab8898), Abcam	Anti-GFP shRNA KD
GSM1059009 1	Anti-GFP shRNA KD in mESCs	Anti-GFP KD mESCs	AntiGFP_KD_H3K9me3	ESC	H3K9me3 (ab8898), Abcam	Anti-GFP shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059009 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059009	SRX213806	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059009_H3K9me3_antiGFP_binsize_200_stepsize_50_fixedstep_rpkm.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.39.zip	H3K9me3 (ab8898), Abcam	Anti-GFP shRNA KD
GSM1059009 1	Anti-GFP shRNA KD in mESCs	Anti-GFP KD mESCs	AntiGFP_KD_H3K9me3	ESC	H3K9me3 (ab8898), Abcam	Anti-GFP shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059009 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059009	SRX213806	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059009_H3K9me3_antiGFP.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.39.zip	H3K9me3 (ab8898), Abcam	Anti-GFP shRNA KD
GSM1059008 1	Anti-GFP shRNA KD in mESCs	Anti-GFP KD mESCs	AntiGFP_KD_H3K4me3	ESC	H3K4me3 (ab1012), Abcam	Anti-GFP shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059008 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059008	SRX213805	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059008_H3K4me3_antiGFP_pd5_peaks.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.39.zip	H3K4me3 (ab1012), Abcam	Anti-GFP shRNA KD
GSM1059008 1	Anti-GFP shRNA KD in mESCs	Anti-GFP KD mESCs	AntiGFP_KD_H3K4me3	ESC	H3K4me3 (ab1012), Abcam	Anti-GFP shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059008 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059008	SRX213805	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059008_H3K4me3_antiGFP_binsize_200_stepsize_50_fixedstep_rpkm.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.40.zip	H3K4me3 (ab1012), Abcam	Anti-GFP shRNA KD
GSM1059008 1	Anti-GFP shRNA KD in mESCs	Anti-GFP KD mESCs	AntiGFP_KD_H3K4me3	ESC	H3K4me3 (ab1012), Abcam	Anti-GFP shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059008 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059008	SRX213805	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059008_H3K4me3_antiGFP.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.41.zip	H3K4me3 (ab1012), Abcam	Anti-GFP shRNA KD
GSM1059007 1	Anti-GFP shRNA KD in mESCs	Anti-GFP KD mESCs	AntiGFP_KD_H3K36me3	ESC	H3K36me3 (ab9050), Abcam	Anti-GFP shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059007 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059007	SRX213804	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059007_H3K36me3_antiGFP_pd6_peaks.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.41.zip	H3K36me3 (ab9050), Abcam	Anti-GFP shRNA KD
GSM1059007 1	Anti-GFP shRNA KD in mESCs	Anti-GFP KD mESCs	AntiGFP_KD_H3K36me3	ESC	H3K36me3 (ab9050), Abcam	Anti-GFP shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059007 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059007	SRX213804	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059007_H3K36me3_antiGFP_binsize_200_stepsize_50_fixedstep_rpkm.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.41.zip	H3K36me3 (ab9050), Abcam	Anti-GFP shRNA KD
GSM1059007 1	Anti-GFP shRNA KD in mESCs	Anti-GFP KD mESCs	AntiGFP_KD_H3K36me3	ESC	H3K36me3 (ab9050), Abcam	Anti-GFP shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059007 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059007	SRX213804	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059007_H3K36me3_antiGFP.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.42.zip	H3K36me3 (ab9050), Abcam	Anti-GFP shRNA KD
GSM1059006 1	Anti-GFP shRNA KD in mESCs	Anti-GFP KD mESCs	AntiGFP_KD_H3K27me3	ESC	H3K27me3 (ab6002), Abcam	Anti-GFP shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059006 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059006	SRX213803	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059006_H3K27me3_antiGFP_pd5_peaks.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.42.zip	H3K27me3 (ab6002), Abcam	Anti-GFP shRNA KD
GSM1059006 1	Anti-GFP shRNA KD in mESCs	Anti-GFP KD mESCs	AntiGFP_KD_H3K27me3	ESC	H3K27me3 (ab6002), Abcam	Anti-GFP shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059006 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059006	SRX213803	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059006_H3K27me3_antiGFP_binsize_200_stepsize_50_fixedstep_rpkm.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.43.zip	H3K27me3 (ab6002), Abcam	Anti-GFP shRNA KD
GSM1059006 1	Anti-GFP shRNA KD in mESCs	Anti-GFP KD mESCs	AntiGFP_KD_H3K27me3	ESC	H3K27me3 (ab6002), Abcam	Anti-GFP shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059006 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059006	SRX213803	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059006_H3K27me3_antiGFP.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.44.zip	H3K27me3 (ab6002), Abcam	Anti-GFP shRNA KD
GSM1059005 1	Anti-GFP shRNA KD in mESCs	Anti-GFP KD mESCs	AntiGFP_KD_H3K27ac	ESC	H3K27ac (ab4729), Abcam	Anti-GFP shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059005 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059005	SRX213802	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059005_K27ac_antiGFP_pd10_peaks.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.44.zip	H3K27ac (ab4729), Abcam	Anti-GFP shRNA KD
GSM1059005 1	Anti-GFP shRNA KD in mESCs	Anti-GFP KD mESCs	AntiGFP_KD_H3K27ac	ESC	H3K27ac (ab4729), Abcam	Anti-GFP shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059005 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059005	SRX213802	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059005_K27ac_AntiGFP_binsize_200_stepsize_50_fixedstep_rpkm.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.44.zip	H3K27ac (ab4729), Abcam	Anti-GFP shRNA KD
GSM1059005 1	Anti-GFP shRNA KD in mESCs	Anti-GFP KD mESCs	AntiGFP_KD_H3K27ac	ESC	H3K27ac (ab4729), Abcam	Anti-GFP shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059005 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059005	SRX213802	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059005_K27ac_AntiGFP_6_19_12.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.45.zip	H3K27ac (ab4729), Abcam	Anti-GFP shRNA KD
GSM1059004 1	Anti-GFP shRNA KD in mESCs	Anti-GFP KD mESCs	AntiGFP_KD_Ezh2	ESC	ChIPAb+ Ezh2, clone AC22 (17-662), Millipore	Anti-GFP shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059004 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059004	SRX213801	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059004_Ezh2_antiGFP_pd5_peaks.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.45.zip	ChIPAb+ Ezh2, clone AC22 (17-662), Millipore	Anti-GFP shRNA KD
GSM1059004 1	Anti-GFP shRNA KD in mESCs	Anti-GFP KD mESCs	AntiGFP_KD_Ezh2	ESC	ChIPAb+ Ezh2, clone AC22 (17-662), Millipore	Anti-GFP shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059004 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059004	SRX213801	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059004_Ezh2_antiGFP_binsize_200_stepsize_50_fixedstep_rpkm.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.46.zip	ChIPAb+ Ezh2, clone AC22 (17-662), Millipore	Anti-GFP shRNA KD
GSM1059004 1	Anti-GFP shRNA KD in mESCs	Anti-GFP KD mESCs	AntiGFP_KD_Ezh2	ESC	ChIPAb+ Ezh2, clone AC22 (17-662), Millipore	Anti-GFP shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059004 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059004	SRX213801	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059004_Ezh2_antiGFP.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.47.zip	ChIPAb+ Ezh2, clone AC22 (17-662), Millipore	Anti-GFP shRNA KD
GSM1059003 1	Anti-GFP shRNA KD in mESCs	Anti-GFP KD mESCs	AntiGFP_KD_Ctr9	ESC	Ctr9 (A301-395A), Bethyl Laboratories	Anti-GFP shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059003 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059003	SRX213800	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059003_Ctr9_AntiGFP_pd4_peaks.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.47.zip	Ctr9 (A301-395A), Bethyl Laboratories	Anti-GFP shRNA KD
GSM1059003 1	Anti-GFP shRNA KD in mESCs	Anti-GFP KD mESCs	AntiGFP_KD_Ctr9	ESC	Ctr9 (A301-395A), Bethyl Laboratories	Anti-GFP shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059003 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059003	SRX213800	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059003_Ctr9_AntiGFP_binsize_200_stepsize_50_fixedstep_rpkm.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.47.zip	Ctr9 (A301-395A), Bethyl Laboratories	Anti-GFP shRNA KD
GSM1059003 1	Anti-GFP shRNA KD in mESCs	Anti-GFP KD mESCs	AntiGFP_KD_Ctr9	ESC	Ctr9 (A301-395A), Bethyl Laboratories	Anti-GFP shRNA KD	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059003 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059003	SRX213800	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059003_Ctr9_AntiGFP.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.48.zip	Ctr9 (A301-395A), Bethyl Laboratories	Anti-GFP shRNA KD
GSM1059002 1	wild type mouse ES cells	Mouse ES cells	mESC_K9me2_helicos	ESC	H3K9me2 (ab1220), Abcam	wild type	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059002 extract 1	Helicos HeliScope	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059002	SRX213799	Helicos HeliScope (Mus musculus)	sequencing assay	GSM1059002_K9me2_helicos_peaks.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.48.zip	H3K9me2 (ab1220), Abcam	wild type
GSM1059002 1	wild type mouse ES cells	Mouse ES cells	mESC_K9me2_helicos	ESC	H3K9me2 (ab1220), Abcam	wild type	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059002 extract 1	Helicos HeliScope	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059002	SRX213799	Helicos HeliScope (Mus musculus)	sequencing assay	GSM1059002_K9me2_helicos_binsize_200_stepsize_50_fixedstep_rpkm.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.49.zip	H3K9me2 (ab1220), Abcam	wild type
GSM1059002 1	wild type mouse ES cells	Mouse ES cells	mESC_K9me2_helicos	ESC	H3K9me2 (ab1220), Abcam	wild type	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059002 extract 1	Helicos HeliScope	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059002	SRX213799	Helicos HeliScope (Mus musculus)	sequencing assay	GSM1059002_K9me2_helicos.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.49.zip	H3K9me2 (ab1220), Abcam	wild type
GSM1059001 1	wild type mouse ES cells	Mouse ES cells	mESC_K4me3_solexa	ESC	H3K4me3 (ab1012), Abcam	wild type	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059001 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059001	SRX213798	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059001_K4me3_wt_peaks.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.49.zip	H3K4me3 (ab1012), Abcam	wild type
GSM1059001 1	wild type mouse ES cells	Mouse ES cells	mESC_K4me3_solexa	ESC	H3K4me3 (ab1012), Abcam	wild type	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059001 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059001	SRX213798	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059001_K4me3_wt_binsize_200_stepsize_50_fixedstep_rpkm.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.50.zip	H3K4me3 (ab1012), Abcam	wild type
GSM1059001 1	wild type mouse ES cells	Mouse ES cells	mESC_K4me3_solexa	ESC	H3K4me3 (ab1012), Abcam	wild type	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059001 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059001	SRX213798	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1059001_K4me3_wt.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.51.zip	H3K4me3 (ab1012), Abcam	wild type
GSM1059000 1	wild type mouse ES cells	Mouse ES cells	mESC_K36me2_helicos	ESC	H3K36me2 (07-274), Millipore	wild type	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059000 extract 1	Helicos HeliScope	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059000	SRX213797	Helicos HeliScope (Mus musculus)	sequencing assay	GSM1059000_K36me2_helicos_peaks.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.51.zip	H3K36me2 (07-274), Millipore	wild type
GSM1059000 1	wild type mouse ES cells	Mouse ES cells	mESC_K36me2_helicos	ESC	H3K36me2 (07-274), Millipore	wild type	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059000 extract 1	Helicos HeliScope	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059000	SRX213797	Helicos HeliScope (Mus musculus)	sequencing assay	GSM1059000_K36me2_helicos_binsize_200_stepsize_50_fixedstep_rpkm.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.51.zip	H3K36me2 (07-274), Millipore	wild type
GSM1059000 1	wild type mouse ES cells	Mouse ES cells	mESC_K36me2_helicos	ESC	H3K36me2 (07-274), Millipore	wild type	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1059000 extract 1	Helicos HeliScope	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1059000	SRX213797	Helicos HeliScope (Mus musculus)	sequencing assay	GSM1059000_K36me2_helicos.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.52.zip	H3K36me2 (07-274), Millipore	wild type
GSM1058999 1	wild type mouse ES cells	Mouse ES cells	mESC_K27me3_solexa	ESC	H3K27me3 (ab6002), Abcam	wild type	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1058999 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1058999	SRX213796	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1058999_K27me3_wt_peaks.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.52.zip	H3K27me3 (ab6002), Abcam	wild type
GSM1058999 1	wild type mouse ES cells	Mouse ES cells	mESC_K27me3_solexa	ESC	H3K27me3 (ab6002), Abcam	wild type	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1058999 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1058999	SRX213796	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1058999_K27me3_wt_binsize_200_stepsize_50_fixedstep_rpkm.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.52.zip	H3K27me3 (ab6002), Abcam	wild type
GSM1058999 1	wild type mouse ES cells	Mouse ES cells	mESC_K27me3_solexa	ESC	H3K27me3 (ab6002), Abcam	wild type	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1058999 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1058999	SRX213796	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1058999_K27me3_wt.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.53.zip	H3K27me3 (ab6002), Abcam	wild type
GSM1058998 1	wild type mouse ES cells	Mouse ES cells	mESC_Input_solexa	ESC	None	wild type	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1058998 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1058998	SRX213795	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1058998_Input_mESC_binsize_200_stepsize_50_fixedstep_rpkm.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.53.zip	None	wild type
GSM1058998 1	wild type mouse ES cells	Mouse ES cells	mESC_Input_solexa	ESC	None	wild type	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1058998 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1058998	SRX213795	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1058998_Input_mESC.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.54.zip	None	wild type
GSM1058997 1	Mouse ES cells with BirA ligase, without any biotinylated protein (Control)	Mouse ES cells with BirA ligase	mESC_BirA_solexa	ESC	ChIP-ed with Streptavidin beads	wild type	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1058997 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1058997	SRX213794	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1058997_BirA_wt_binsize_200_stepsize_50_fixedstep_rpkm.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.55.zip	ChIP-ed with Streptavidin beads	wild type
GSM1058997 1	Mouse ES cells with BirA ligase, without any biotinylated protein (Control)	Mouse ES cells with BirA ligase	mESC_BirA_solexa	ESC	ChIP-ed with Streptavidin beads	wild type	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1058997 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1058997	SRX213794	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1058997_BirA_wt.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.56.zip	ChIP-ed with Streptavidin beads	wild type
GSM1058996 1	Biotinylated Jmjd2c mouse ES cells, with BirA ligase	Biotinylated Jmjd2c mouse ES cells, with BirA ligase	mESC_BioJmjd2c_solexa	ESC	Biotinylated protein ChIP-ed with Streptavidin beads	wild type	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1058996 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1058996	SRX213793	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1058996_BioJmjd2c_wt_onBirA_peaks.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.56.zip	Biotinylated protein ChIP-ed with Streptavidin beads	wild type
GSM1058996 1	Biotinylated Jmjd2c mouse ES cells, with BirA ligase	Biotinylated Jmjd2c mouse ES cells, with BirA ligase	mESC_BioJmjd2c_solexa	ESC	Biotinylated protein ChIP-ed with Streptavidin beads	wild type	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1058996 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1058996	SRX213793	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1058996_BioJmjd2c_wt_binsize_200_stepsize_50_fixedstep_rpkm.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.56.zip	Biotinylated protein ChIP-ed with Streptavidin beads	wild type
GSM1058996 1	Biotinylated Jmjd2c mouse ES cells, with BirA ligase	Biotinylated Jmjd2c mouse ES cells, with BirA ligase	mESC_BioJmjd2c_solexa	ESC	Biotinylated protein ChIP-ed with Streptavidin beads	wild type	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1058996 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1058996	SRX213793	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1058996_BioJmjd2c_wt.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.57.zip	Biotinylated protein ChIP-ed with Streptavidin beads	wild type
GSM1058995 1	Biotinylated Jmjd2b mouse ES cells, with BirA ligase	Biotinylated Jmjd2b mouse ES cells, with BirA ligase	mESC_BioJmjd2b_solexa	ESC	Biotinylated protein ChIP-ed with Streptavidin beads	wild type	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1058995 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1058995	SRX213792	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1058995_BioJmjd2b_wt_onBirA_peaks.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.57.zip	Biotinylated protein ChIP-ed with Streptavidin beads	wild type
GSM1058995 1	Biotinylated Jmjd2b mouse ES cells, with BirA ligase	Biotinylated Jmjd2b mouse ES cells, with BirA ligase	mESC_BioJmjd2b_solexa	ESC	Biotinylated protein ChIP-ed with Streptavidin beads	wild type	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1058995 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1058995	SRX213792	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1058995_BioJmjd2b_wt_binsize_200_stepsize_50_fixedstep_rpkm.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.58.zip	Biotinylated protein ChIP-ed with Streptavidin beads	wild type
GSM1058995 1	Biotinylated Jmjd2b mouse ES cells, with BirA ligase	Biotinylated Jmjd2b mouse ES cells, with BirA ligase	mESC_BioJmjd2b_solexa	ESC	Biotinylated protein ChIP-ed with Streptavidin beads	wild type	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	agouti	male	EFO	EFO_0001266	129S4/Svjae	P-GSE43229-1	ArrayExpress	P-GSE43229-2	ArrayExpress	P-GSE43229-3	ArrayExpress	GSM1058995 extract 1	Illumina HiSeq 2000	ChIP	genomic	ChIP-Seq	genomic DNA	GSM1058995	SRX213792	Illumina HiSeq 2000 (Mus musculus)	sequencing assay	GSM1058995_BioJmjd2b_wt.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43229/E-GEOD-43229.processed.59.zip	Biotinylated protein ChIP-ed with Streptavidin beads	wild type