Source Name	Comment [Sample_description]	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [organism]	Term Source REF	Term Accession Number	Characteristics [organism part]	Term Source REF	Term Accession Number	Characteristics [strain]	Characteristics [transgenic mouse]	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Extract Name	Material Type	Protocol REF	Term Source REF	Labeled Extract Name	Label	Protocol REF	Term Source REF	Assay Name	Array Design REF	Term Source REF	Technology Type	Protocol REF	Term Source REF	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Term Source REF	Normalization Name	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	FactorValue [ORGANISM PART]	Term Source REF	Term Accession Number	FactorValue [STRAIN]	FactorValue [TRANSGENIC MOUSE]
GSM1058763 1	1575k	Mouse Mammary Gland	Mouse Mammary Gland FvB Rep3	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	mammary gland	EFO	http://purl.obolibrary.org/obo/UBERON_0001911	FvB	WT	P-GSE43216-2	ArrayExpress	P-GSE43216-3	ArrayExpress	P-GSE43216-4	ArrayExpress	GSM1058763 extract 1	total RNA	P-GSE43216-5	ArrayExpress	GSM1058763 LE 1	biotin	P-GSE43216-6	ArrayExpress	GSM1058763	A-AFFY-36	ArrayExpress	array assay	P-GSE43216-7	ArrayExpress	GSM1058763_1575.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43216/E-GEOD-43216.raw.1.zip	P-GSE43216-1	ArrayExpress	GSM1058763_sample_table.txt norm	GSM1058763_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43216/E-GEOD-43216.processed.1.zip	mammary gland	EFO	http://purl.obolibrary.org/obo/UBERON_0001911	FvB	WT
GSM1058762 1	1523k	Mouse Mammary Gland	Mouse Mammary Gland FvB Rep2	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	mammary gland	EFO	http://purl.obolibrary.org/obo/UBERON_0001911	FvB	WT	P-GSE43216-2	ArrayExpress	P-GSE43216-3	ArrayExpress	P-GSE43216-4	ArrayExpress	GSM1058762 extract 1	total RNA	P-GSE43216-5	ArrayExpress	GSM1058762 LE 1	biotin	P-GSE43216-6	ArrayExpress	GSM1058762	A-AFFY-36	ArrayExpress	array assay	P-GSE43216-7	ArrayExpress	GSM1058762_1523.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43216/E-GEOD-43216.raw.1.zip	P-GSE43216-1	ArrayExpress	GSM1058762_sample_table.txt norm	GSM1058762_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43216/E-GEOD-43216.processed.1.zip	mammary gland	EFO	http://purl.obolibrary.org/obo/UBERON_0001911	FvB	WT
GSM1058761 1	1505k	Mouse Mammary Gland	Mouse Mammary Gland FvB Rep1	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	mammary gland	EFO	http://purl.obolibrary.org/obo/UBERON_0001911	FvB	WT	P-GSE43216-2	ArrayExpress	P-GSE43216-3	ArrayExpress	P-GSE43216-4	ArrayExpress	GSM1058761 extract 1	total RNA	P-GSE43216-5	ArrayExpress	GSM1058761 LE 1	biotin	P-GSE43216-6	ArrayExpress	GSM1058761	A-AFFY-36	ArrayExpress	array assay	P-GSE43216-7	ArrayExpress	GSM1058761_1505.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43216/E-GEOD-43216.raw.1.zip	P-GSE43216-1	ArrayExpress	GSM1058761_sample_table.txt norm	GSM1058761_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43216/E-GEOD-43216.processed.1.zip	mammary gland	EFO	http://purl.obolibrary.org/obo/UBERON_0001911	FvB	WT
GSM1058760 1	9443a	Mouse Mammary Tumor	Mammary Tumor-Cyclin D1/KE Rep3	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	Mammary Tumor	  	  	FvB/N	MMTV-CCND/KE	P-GSE43216-2	ArrayExpress	P-GSE43216-3	ArrayExpress	P-GSE43216-4	ArrayExpress	GSM1058760 extract 1	total RNA	P-GSE43216-5	ArrayExpress	GSM1058760 LE 1	biotin	P-GSE43216-6	ArrayExpress	GSM1058760	A-AFFY-36	ArrayExpress	array assay	P-GSE43216-7	ArrayExpress	GSM1058760_9443.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43216/E-GEOD-43216.raw.1.zip	P-GSE43216-1	ArrayExpress	GSM1058760_sample_table.txt norm	GSM1058760_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43216/E-GEOD-43216.processed.1.zip	Mammary Tumor	  	  	FvB/N	MMTV-CCND/KE
GSM1058759 1	9425a	Mouse Mammary Tumor	Mammary Tumor-Cyclin D1/KE Rep2	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	Mammary Tumor	  	  	FvB/N	MMTV-CCND/KE	P-GSE43216-2	ArrayExpress	P-GSE43216-3	ArrayExpress	P-GSE43216-4	ArrayExpress	GSM1058759 extract 1	total RNA	P-GSE43216-5	ArrayExpress	GSM1058759 LE 1	biotin	P-GSE43216-6	ArrayExpress	GSM1058759	A-AFFY-36	ArrayExpress	array assay	P-GSE43216-7	ArrayExpress	GSM1058759_9425.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43216/E-GEOD-43216.raw.1.zip	P-GSE43216-1	ArrayExpress	GSM1058759_sample_table.txt norm	GSM1058759_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43216/E-GEOD-43216.processed.1.zip	Mammary Tumor	  	  	FvB/N	MMTV-CCND/KE
GSM1058758 1	9415a	Mouse Mammary Tumor	Mammary Tumor-Cyclin D1/KE Rep1	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	Mammary Tumor	  	  	FvB/N	MMTV-CCND/KE	P-GSE43216-2	ArrayExpress	P-GSE43216-3	ArrayExpress	P-GSE43216-4	ArrayExpress	GSM1058758 extract 1	total RNA	P-GSE43216-5	ArrayExpress	GSM1058758 LE 1	biotin	P-GSE43216-6	ArrayExpress	GSM1058758	A-AFFY-36	ArrayExpress	array assay	P-GSE43216-7	ArrayExpress	GSM1058758_9415.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43216/E-GEOD-43216.raw.1.zip	P-GSE43216-1	ArrayExpress	GSM1058758_sample_table.txt norm	GSM1058758_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43216/E-GEOD-43216.processed.1.zip	Mammary Tumor	  	  	FvB/N	MMTV-CCND/KE
GSM1058757 1	790c	Mouse Mammary Tumor	Mammary Tumor-Cyclin D1/WT Rep3	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	Mammary Tumor	  	  	FvB/N	MMTV-CCND/WT	P-GSE43216-2	ArrayExpress	P-GSE43216-3	ArrayExpress	P-GSE43216-4	ArrayExpress	GSM1058757 extract 1	total RNA	P-GSE43216-5	ArrayExpress	GSM1058757 LE 1	biotin	P-GSE43216-6	ArrayExpress	GSM1058757	A-AFFY-36	ArrayExpress	array assay	P-GSE43216-7	ArrayExpress	GSM1058757_790.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43216/E-GEOD-43216.raw.1.zip	P-GSE43216-1	ArrayExpress	GSM1058757_sample_table.txt norm	GSM1058757_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43216/E-GEOD-43216.processed.1.zip	Mammary Tumor	  	  	FvB/N	MMTV-CCND/WT
GSM1058756 1	776c	Mouse Mammary Tumor	Mammary Tumor-Cyclin D1/WT Rep2	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	Mammary Tumor	  	  	FvB/N	MMTV-CCND/WT	P-GSE43216-2	ArrayExpress	P-GSE43216-3	ArrayExpress	P-GSE43216-4	ArrayExpress	GSM1058756 extract 1	total RNA	P-GSE43216-5	ArrayExpress	GSM1058756 LE 1	biotin	P-GSE43216-6	ArrayExpress	GSM1058756	A-AFFY-36	ArrayExpress	array assay	P-GSE43216-7	ArrayExpress	GSM1058756_776.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43216/E-GEOD-43216.raw.1.zip	P-GSE43216-1	ArrayExpress	GSM1058756_sample_table.txt norm	GSM1058756_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43216/E-GEOD-43216.processed.1.zip	Mammary Tumor	  	  	FvB/N	MMTV-CCND/WT
GSM1058755 1	708c	Mouse Mammary Tumor	Mammary Tumor-Cyclin D1/WT Rep1	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	Mammary Tumor	  	  	FvB/N	MMTV-CCND/WT	P-GSE43216-2	ArrayExpress	P-GSE43216-3	ArrayExpress	P-GSE43216-4	ArrayExpress	GSM1058755 extract 1	total RNA	P-GSE43216-5	ArrayExpress	GSM1058755 LE 1	biotin	P-GSE43216-6	ArrayExpress	GSM1058755	A-AFFY-36	ArrayExpress	array assay	P-GSE43216-7	ArrayExpress	GSM1058755_708.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43216/E-GEOD-43216.raw.1.zip	P-GSE43216-1	ArrayExpress	GSM1058755_sample_table.txt norm	GSM1058755_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43216/E-GEOD-43216.processed.1.zip	Mammary Tumor	  	  	FvB/N	MMTV-CCND/WT
GSM1058754 1	508k	Mouse Mammary gland 8 week old females	Mammary Gland-rtTA/Cyclin D1-KE mutant Rep3	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	mammary gland	EFO	http://purl.obolibrary.org/obo/UBERON_0001911	FvB/N	rtTA/CCND1 KE mutant	P-GSE43216-2	ArrayExpress	P-GSE43216-3	ArrayExpress	P-GSE43216-4	ArrayExpress	GSM1058754 extract 1	total RNA	P-GSE43216-5	ArrayExpress	GSM1058754 LE 1	biotin	P-GSE43216-6	ArrayExpress	GSM1058754	A-AFFY-130	ArrayExpress	array assay	P-GSE43216-7	ArrayExpress	GSM1058754_508k_11_19_09.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43216/E-GEOD-43216.raw.1.zip	P-GSE43216-1	ArrayExpress	GSM1058754_sample_table.txt norm	GSM1058754_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43216/E-GEOD-43216.processed.1.zip	mammary gland	EFO	http://purl.obolibrary.org/obo/UBERON_0001911	FvB/N	rtTA/CCND1 KE mutant
GSM1058753 1	161k	Mouse Mammary gland 8 week old females	Mammary Gland-rtTA/Cyclin D1-KE mutant Rep2	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	mammary gland	EFO	http://purl.obolibrary.org/obo/UBERON_0001911	FvB/N	rtTA/CCND1 KE mutant	P-GSE43216-2	ArrayExpress	P-GSE43216-3	ArrayExpress	P-GSE43216-4	ArrayExpress	GSM1058753 extract 1	total RNA	P-GSE43216-5	ArrayExpress	GSM1058753 LE 1	biotin	P-GSE43216-6	ArrayExpress	GSM1058753	A-AFFY-130	ArrayExpress	array assay	P-GSE43216-7	ArrayExpress	GSM1058753_161k_11_19_09.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43216/E-GEOD-43216.raw.1.zip	P-GSE43216-1	ArrayExpress	GSM1058753_sample_table.txt norm	GSM1058753_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43216/E-GEOD-43216.processed.1.zip	mammary gland	EFO	http://purl.obolibrary.org/obo/UBERON_0001911	FvB/N	rtTA/CCND1 KE mutant
GSM1058752 1	159k	Mouse Mammary gland 8 week old females	Mammary Gland-rtTA/Cyclin D1-KE mutant Rep1	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	mammary gland	EFO	http://purl.obolibrary.org/obo/UBERON_0001911	FvB/N	rtTA/CCND1 KE mutant	P-GSE43216-2	ArrayExpress	P-GSE43216-3	ArrayExpress	P-GSE43216-4	ArrayExpress	GSM1058752 extract 1	total RNA	P-GSE43216-5	ArrayExpress	GSM1058752 LE 1	biotin	P-GSE43216-6	ArrayExpress	GSM1058752	A-AFFY-130	ArrayExpress	array assay	P-GSE43216-7	ArrayExpress	GSM1058752_159k_11_19_09.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43216/E-GEOD-43216.raw.1.zip	P-GSE43216-1	ArrayExpress	GSM1058752_sample_table.txt norm	GSM1058752_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43216/E-GEOD-43216.processed.1.zip	mammary gland	EFO	http://purl.obolibrary.org/obo/UBERON_0001911	FvB/N	rtTA/CCND1 KE mutant
GSM861757 1	746a	Mouse Mammary gland 8 week old females	Mammary Gland-rtTA/Cyclin D1- Rep3	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	mammary gland	EFO	http://purl.obolibrary.org/obo/UBERON_0001911	FvB/N	rtTA/CCND1	P-GSE43216-2	ArrayExpress	P-GSE43216-3	ArrayExpress	P-GSE43216-4	ArrayExpress	GSM861757 extract 1	total RNA	P-GSE43216-5	ArrayExpress	GSM861757 LE 1	biotin	P-GSE43216-6	ArrayExpress	GSM861757	A-AFFY-130	ArrayExpress	array assay	P-GSE43216-7	ArrayExpress	GSM861757.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43216/E-GEOD-43216.raw.1.zip	P-GSE43216-1	ArrayExpress	GSM861757_sample_table.txt norm	GSM861757_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43216/E-GEOD-43216.processed.1.zip	mammary gland	EFO	http://purl.obolibrary.org/obo/UBERON_0001911	FvB/N	rtTA/CCND1
GSM861756 1	199a	Mouse Mammary gland 8 week old females	Mammary Gland-rtTA/Cyclin D1- Rep2	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	mammary gland	EFO	http://purl.obolibrary.org/obo/UBERON_0001911	FvB/N	rtTA/CCND1	P-GSE43216-2	ArrayExpress	P-GSE43216-3	ArrayExpress	P-GSE43216-4	ArrayExpress	GSM861756 extract 1	total RNA	P-GSE43216-5	ArrayExpress	GSM861756 LE 1	biotin	P-GSE43216-6	ArrayExpress	GSM861756	A-AFFY-130	ArrayExpress	array assay	P-GSE43216-7	ArrayExpress	GSM861756.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43216/E-GEOD-43216.raw.1.zip	P-GSE43216-1	ArrayExpress	GSM861756_sample_table.txt norm	GSM861756_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43216/E-GEOD-43216.processed.1.zip	mammary gland	EFO	http://purl.obolibrary.org/obo/UBERON_0001911	FvB/N	rtTA/CCND1
GSM861755 1	40a	Mouse Mammary gland 8 week old females	Mammary Gland-rtTA/Cyclin D1- Rep1	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	mammary gland	EFO	http://purl.obolibrary.org/obo/UBERON_0001911	FvB/N	rtTA/CCND1	P-GSE43216-2	ArrayExpress	P-GSE43216-3	ArrayExpress	P-GSE43216-4	ArrayExpress	GSM861755 extract 1	total RNA	P-GSE43216-5	ArrayExpress	GSM861755 LE 1	biotin	P-GSE43216-6	ArrayExpress	GSM861755	A-AFFY-130	ArrayExpress	array assay	P-GSE43216-7	ArrayExpress	GSM861755.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43216/E-GEOD-43216.raw.1.zip	P-GSE43216-1	ArrayExpress	GSM861755_sample_table.txt norm	GSM861755_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43216/E-GEOD-43216.processed.1.zip	mammary gland	EFO	http://purl.obolibrary.org/obo/UBERON_0001911	FvB/N	rtTA/CCND1
GSM861754 1	624c	Mouse Mammary gland 8 week old females	Mammary Gland-rtTA Control- Rep2	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	mammary gland	EFO	http://purl.obolibrary.org/obo/UBERON_0001911	FvB/N	rtTA	P-GSE43216-2	ArrayExpress	P-GSE43216-3	ArrayExpress	P-GSE43216-4	ArrayExpress	GSM861754 extract 1	total RNA	P-GSE43216-5	ArrayExpress	GSM861754 LE 1	biotin	P-GSE43216-6	ArrayExpress	GSM861754	A-AFFY-130	ArrayExpress	array assay	P-GSE43216-7	ArrayExpress	GSM861754.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43216/E-GEOD-43216.raw.1.zip	P-GSE43216-1	ArrayExpress	GSM861754_sample_table.txt norm	GSM861754_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43216/E-GEOD-43216.processed.1.zip	mammary gland	EFO	http://purl.obolibrary.org/obo/UBERON_0001911	FvB/N	rtTA
GSM861753 1	587c	Mouse Mammary gland 8 week old females	Mammary Gland-rtTA Control- Rep1	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	mammary gland	EFO	http://purl.obolibrary.org/obo/UBERON_0001911	FvB/N	rtTA	P-GSE43216-2	ArrayExpress	P-GSE43216-3	ArrayExpress	P-GSE43216-4	ArrayExpress	GSM861753 extract 1	total RNA	P-GSE43216-5	ArrayExpress	GSM861753 LE 1	biotin	P-GSE43216-6	ArrayExpress	GSM861753	A-AFFY-130	ArrayExpress	array assay	P-GSE43216-7	ArrayExpress	GSM861753.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43216/E-GEOD-43216.raw.1.zip	P-GSE43216-1	ArrayExpress	GSM861753_sample_table.txt norm	GSM861753_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43216/E-GEOD-43216.processed.1.zip	mammary gland	EFO	http://purl.obolibrary.org/obo/UBERON_0001911	FvB/N	rtTA