Source Name Comment [Sample_description] Comment [Sample_source_name] Comment [Sample_title] Characteristics [genotype] Characteristics [growth condition] Characteristics [organism] Term Source REF Term Accession Number Characteristics [strain/background] Protocol REF Term Source REF Protocol REF Term Source REF Extract Name Material Type Protocol REF Term Source REF Labeled Extract Name Label Protocol REF Term Source REF Assay Name Array Design REF Term Source REF Technology Type Protocol REF Term Source REF Array Data File Comment [ArrayExpress FTP file] Protocol REF Term Source REF Normalization Name Derived Array Data File Comment [Derived ArrayExpress FTP file] FactorValue [GENOTYPE] FactorValue [STRAIN/BACKGROUND] GSM1111965 1 Biological replicate 2 of 2. strain C630E grown 15h in MS (reference) CD630_WT2-cy5_spoIIID2-cy3 wild-type [Clostridium] difficile EFO http://purl.obolibrary.org/obo/NCBITaxon_1496 C630E Mullany P-GSE43202-10 ArrayExpress P-GSE43202-4 ArrayExpress GSM1111965 extract 1 total RNA P-GSE43202-5 ArrayExpress GSM1111965 LE 1 Cy5 P-GSE43202-6 ArrayExpress GSM1111965 A-GEOD-10556 ArrayExpress array assay P-GSE43202-7 ArrayExpress GSM1111965_CD630_WT2-cy5_spoIIID2-cy3.gpr ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.raw.1.zip P-GSE43202-2 ArrayExpress GSM1111965_sample_table.txt norm GSM1111965_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.processed.1.zip wild-type C630E Mullany GSM1111965 2 Biological replicate 2 of 2. spoIIID mutant grown 15h in MS CD630_WT2-cy5_spoIIID2-cy3 spoIIID mutant [Clostridium] difficile EFO http://purl.obolibrary.org/obo/NCBITaxon_1496 C630E P-GSE43202-10 ArrayExpress P-GSE43202-4 ArrayExpress GSM1111965 extract 2 total RNA P-GSE43202-5 ArrayExpress GSM1111965 LE 2 Cy3 P-GSE43202-6 ArrayExpress GSM1111965 A-GEOD-10556 ArrayExpress array assay P-GSE43202-7 ArrayExpress GSM1111965_CD630_WT2-cy5_spoIIID2-cy3.gpr ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.raw.1.zip P-GSE43202-2 ArrayExpress GSM1111965_sample_table.txt norm GSM1111965_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.processed.1.zip spoIIID mutant C630E GSM1111964 2 Biological replicate 1 of 2. spoIIID mutant grown 15h in MS CD630_WT1-cy3_SpoIIID1-cy5 spoIIID mutant [Clostridium] difficile EFO http://purl.obolibrary.org/obo/NCBITaxon_1496 C630E P-GSE43202-10 ArrayExpress P-GSE43202-4 ArrayExpress GSM1111964 extract 2 total RNA P-GSE43202-5 ArrayExpress GSM1111964 LE 2 Cy5 P-GSE43202-6 ArrayExpress GSM1111964 A-GEOD-10556 ArrayExpress array assay P-GSE43202-7 ArrayExpress GSM1111964_CD630_WT1-cy3_SpoIIID1-cy5.gpr ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.raw.1.zip P-GSE43202-2 ArrayExpress GSM1111964_sample_table.txt norm GSM1111964_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.processed.1.zip spoIIID mutant C630E GSM1111964 1 Biological replicate 1 of 2. strain C630E grown 15h in MS (reference) CD630_WT1-cy3_SpoIIID1-cy5 wild-type [Clostridium] difficile EFO http://purl.obolibrary.org/obo/NCBITaxon_1496 C630E Mullany P-GSE43202-10 ArrayExpress P-GSE43202-4 ArrayExpress GSM1111964 extract 1 total RNA P-GSE43202-5 ArrayExpress GSM1111964 LE 1 Cy3 P-GSE43202-6 ArrayExpress GSM1111964 A-GEOD-10556 ArrayExpress array assay P-GSE43202-7 ArrayExpress GSM1111964_CD630_WT1-cy3_SpoIIID1-cy5.gpr ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.raw.1.zip P-GSE43202-2 ArrayExpress GSM1111964_sample_table.txt norm GSM1111964_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.processed.1.zip wild-type C630E Mullany GSM1058186 1 Biological replicate 4 of 4. strain C630E grown 24h in MS (reference) CD630_WT4-Cy5_sigK4-Cy3 wild-type MS medium [Clostridium] difficile EFO http://purl.obolibrary.org/obo/NCBITaxon_1496 C630E Mullany P-GSE43202-9 ArrayExpress P-GSE43202-4 ArrayExpress GSM1058186 extract 1 total RNA P-GSE43202-5 ArrayExpress GSM1058186 LE 1 Cy5 P-GSE43202-6 ArrayExpress GSM1058186 A-GEOD-10556 ArrayExpress array assay P-GSE43202-7 ArrayExpress GSM1058186_CD630_WT4-cy5_sigK4-cy3.gpr ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.raw.1.zip P-GSE43202-1 ArrayExpress GSM1058186_sample_table.txt norm GSM1058186_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.processed.1.zip wild-type C630E Mullany GSM1058186 2 Biological replicate 4 of 4. sigK mutant grown 24h in MS CD630_WT4-Cy5_sigK4-Cy3 sigK mutation MS medium [Clostridium] difficile EFO http://purl.obolibrary.org/obo/NCBITaxon_1496 C630E P-GSE43202-9 ArrayExpress P-GSE43202-4 ArrayExpress GSM1058186 extract 2 total RNA P-GSE43202-5 ArrayExpress GSM1058186 LE 2 Cy3 P-GSE43202-6 ArrayExpress GSM1058186 A-GEOD-10556 ArrayExpress array assay P-GSE43202-7 ArrayExpress GSM1058186_CD630_WT4-cy5_sigK4-cy3.gpr ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.raw.1.zip P-GSE43202-1 ArrayExpress GSM1058186_sample_table.txt norm GSM1058186_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.processed.1.zip sigK mutation C630E GSM1058185 1 Biological replicate 3 of 4. strain C630E grown 24h in MS (reference) CD630_WT3-Cy5_sigK3-Cy3 wild-type MS medium [Clostridium] difficile EFO http://purl.obolibrary.org/obo/NCBITaxon_1496 C630E Mullany P-GSE43202-9 ArrayExpress P-GSE43202-4 ArrayExpress GSM1058185 extract 1 total RNA P-GSE43202-5 ArrayExpress GSM1058185 LE 1 Cy5 P-GSE43202-6 ArrayExpress GSM1058185 A-GEOD-10556 ArrayExpress array assay P-GSE43202-7 ArrayExpress GSM1058185_CD630_WT3-cy5_sigK3-cy3.gpr ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.raw.1.zip P-GSE43202-1 ArrayExpress GSM1058185_sample_table.txt norm GSM1058185_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.processed.1.zip wild-type C630E Mullany GSM1058185 2 Biological replicate 3 of 4. sigK mutant grown 24h in MS CD630_WT3-Cy5_sigK3-Cy3 sigK mutation MS medium [Clostridium] difficile EFO http://purl.obolibrary.org/obo/NCBITaxon_1496 C630E P-GSE43202-9 ArrayExpress P-GSE43202-4 ArrayExpress GSM1058185 extract 2 total RNA P-GSE43202-5 ArrayExpress GSM1058185 LE 2 Cy3 P-GSE43202-6 ArrayExpress GSM1058185 A-GEOD-10556 ArrayExpress array assay P-GSE43202-7 ArrayExpress GSM1058185_CD630_WT3-cy5_sigK3-cy3.gpr ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.raw.1.zip P-GSE43202-1 ArrayExpress GSM1058185_sample_table.txt norm GSM1058185_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.processed.1.zip sigK mutation C630E GSM1058184 1 Biological replicate 2 of 4. strain C630E grown 24h in MS (reference) CD630_WT2-Cy3_sigK2-Cy5 wild-type MS medium [Clostridium] difficile EFO http://purl.obolibrary.org/obo/NCBITaxon_1496 C630E Mullany P-GSE43202-9 ArrayExpress P-GSE43202-4 ArrayExpress GSM1058184 extract 1 total RNA P-GSE43202-5 ArrayExpress GSM1058184 LE 1 Cy3 P-GSE43202-6 ArrayExpress GSM1058184 A-GEOD-10556 ArrayExpress array assay P-GSE43202-7 ArrayExpress GSM1058184_CD630_WT2-cy3_sigK2-cy5.gpr ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.raw.1.zip P-GSE43202-2 ArrayExpress GSM1058184_sample_table.txt norm GSM1058184_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.processed.1.zip wild-type C630E Mullany GSM1058184 2 Biological replicate 2 of 4. sigK mutant grown 24h in MS CD630_WT2-Cy3_sigK2-Cy5 sigK mutation MS medium [Clostridium] difficile EFO http://purl.obolibrary.org/obo/NCBITaxon_1496 C630E P-GSE43202-9 ArrayExpress P-GSE43202-4 ArrayExpress GSM1058184 extract 2 total RNA P-GSE43202-5 ArrayExpress GSM1058184 LE 2 Cy5 P-GSE43202-6 ArrayExpress GSM1058184 A-GEOD-10556 ArrayExpress array assay P-GSE43202-7 ArrayExpress GSM1058184_CD630_WT2-cy3_sigK2-cy5.gpr ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.raw.1.zip P-GSE43202-2 ArrayExpress GSM1058184_sample_table.txt norm GSM1058184_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.processed.1.zip sigK mutation C630E GSM1058183 1 Biological replicate 1 of 4. strain C630E grown 24h in MS (reference) CD630_WT1-Cy3_sigK1-Cy5 wild-type MS medium [Clostridium] difficile EFO http://purl.obolibrary.org/obo/NCBITaxon_1496 C630E Mullany P-GSE43202-9 ArrayExpress P-GSE43202-4 ArrayExpress GSM1058183 extract 1 total RNA P-GSE43202-5 ArrayExpress GSM1058183 LE 1 Cy3 P-GSE43202-6 ArrayExpress GSM1058183 A-GEOD-10556 ArrayExpress array assay P-GSE43202-7 ArrayExpress GSM1058183_CD630_WT1-cy3_sigK1-cy5.gpr ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.raw.1.zip P-GSE43202-2 ArrayExpress GSM1058183_sample_table.txt norm GSM1058183_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.processed.1.zip wild-type C630E Mullany GSM1058183 2 Biological replicate 1 of 4. sigK mutant grown 24h in MS CD630_WT1-Cy3_sigK1-Cy5 sigK mutation MS medium [Clostridium] difficile EFO http://purl.obolibrary.org/obo/NCBITaxon_1496 C630E P-GSE43202-9 ArrayExpress P-GSE43202-4 ArrayExpress GSM1058183 extract 2 total RNA P-GSE43202-5 ArrayExpress GSM1058183 LE 2 Cy5 P-GSE43202-6 ArrayExpress GSM1058183 A-GEOD-10556 ArrayExpress array assay P-GSE43202-7 ArrayExpress GSM1058183_CD630_WT1-cy3_sigK1-cy5.gpr ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.raw.1.zip P-GSE43202-2 ArrayExpress GSM1058183_sample_table.txt norm GSM1058183_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.processed.1.zip sigK mutation C630E GSM1058182 2 Biological replicate 4 of 4. sigG mutant grown 19h in MS CD630_WT4-Cy5_sigG4-Cy3 sigG mutation MS medium [Clostridium] difficile EFO http://purl.obolibrary.org/obo/NCBITaxon_1496 C630E P-GSE43202-8 ArrayExpress P-GSE43202-4 ArrayExpress GSM1058182 extract 2 total RNA P-GSE43202-5 ArrayExpress GSM1058182 LE 2 Cy3 P-GSE43202-6 ArrayExpress GSM1058182 A-GEOD-10556 ArrayExpress array assay P-GSE43202-7 ArrayExpress GSM1058182_CD630_WT4-cy5_sigG4-cy3.gpr ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.raw.1.zip P-GSE43202-1 ArrayExpress GSM1058182_sample_table.txt norm GSM1058182_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.processed.1.zip sigG mutation C630E GSM1058182 1 Biological replicate 4 of 4. strain C630E grown 19h in MS (reference) CD630_WT4-Cy5_sigG4-Cy3 wild-type MS medium [Clostridium] difficile EFO http://purl.obolibrary.org/obo/NCBITaxon_1496 C630E Mullany P-GSE43202-8 ArrayExpress P-GSE43202-4 ArrayExpress GSM1058182 extract 1 total RNA P-GSE43202-5 ArrayExpress GSM1058182 LE 1 Cy5 P-GSE43202-6 ArrayExpress GSM1058182 A-GEOD-10556 ArrayExpress array assay P-GSE43202-7 ArrayExpress GSM1058182_CD630_WT4-cy5_sigG4-cy3.gpr ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.raw.1.zip P-GSE43202-1 ArrayExpress GSM1058182_sample_table.txt norm GSM1058182_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.processed.1.zip wild-type C630E Mullany GSM1058181 2 Biological replicate 3 of 4. sigG mutant grown 19h in MS CD630_WT3-Cy3_sigG3-Cy5 sigG mutation MS medium [Clostridium] difficile EFO http://purl.obolibrary.org/obo/NCBITaxon_1496 C630E P-GSE43202-8 ArrayExpress P-GSE43202-4 ArrayExpress GSM1058181 extract 2 total RNA P-GSE43202-5 ArrayExpress GSM1058181 LE 2 Cy5 P-GSE43202-6 ArrayExpress GSM1058181 A-GEOD-10556 ArrayExpress array assay P-GSE43202-7 ArrayExpress GSM1058181_CD630_WT3-cy3_sigG3-cy5.gpr ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.raw.1.zip P-GSE43202-2 ArrayExpress GSM1058181_sample_table.txt norm GSM1058181_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.processed.1.zip sigG mutation C630E GSM1058181 1 Biological replicate 3 of 4. strain C630E grown 19h in MS (reference) CD630_WT3-Cy3_sigG3-Cy5 wild-type MS medium [Clostridium] difficile EFO http://purl.obolibrary.org/obo/NCBITaxon_1496 C630E Mullany P-GSE43202-8 ArrayExpress P-GSE43202-4 ArrayExpress GSM1058181 extract 1 total RNA P-GSE43202-5 ArrayExpress GSM1058181 LE 1 Cy3 P-GSE43202-6 ArrayExpress GSM1058181 A-GEOD-10556 ArrayExpress array assay P-GSE43202-7 ArrayExpress GSM1058181_CD630_WT3-cy3_sigG3-cy5.gpr ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.raw.1.zip P-GSE43202-2 ArrayExpress GSM1058181_sample_table.txt norm GSM1058181_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.processed.1.zip wild-type C630E Mullany GSM1058180 1 Biological replicate 2 of 4. strain C630E grown 19h in MS (reference) CD630_WT2-Cy5_sigG2-Cy3 wild-type MS medium [Clostridium] difficile EFO http://purl.obolibrary.org/obo/NCBITaxon_1496 C630E Mullany P-GSE43202-8 ArrayExpress P-GSE43202-4 ArrayExpress GSM1058180 extract 1 total RNA P-GSE43202-5 ArrayExpress GSM1058180 LE 1 Cy5 P-GSE43202-6 ArrayExpress GSM1058180 A-GEOD-10556 ArrayExpress array assay P-GSE43202-7 ArrayExpress GSM1058180_CD630_WT2-cy5_sigG2-cy3.gpr ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.raw.1.zip P-GSE43202-1 ArrayExpress GSM1058180_sample_table.txt norm GSM1058180_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.processed.1.zip wild-type C630E Mullany GSM1058180 2 Biological replicate 2 of 4. sigG mutant grown 19h in MS CD630_WT2-Cy5_sigG2-Cy3 sigG mutation MS medium [Clostridium] difficile EFO http://purl.obolibrary.org/obo/NCBITaxon_1496 C630E P-GSE43202-8 ArrayExpress P-GSE43202-4 ArrayExpress GSM1058180 extract 2 total RNA P-GSE43202-5 ArrayExpress GSM1058180 LE 2 Cy3 P-GSE43202-6 ArrayExpress GSM1058180 A-GEOD-10556 ArrayExpress array assay P-GSE43202-7 ArrayExpress GSM1058180_CD630_WT2-cy5_sigG2-cy3.gpr ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.raw.1.zip P-GSE43202-1 ArrayExpress GSM1058180_sample_table.txt norm GSM1058180_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.processed.1.zip sigG mutation C630E GSM1058179 1 Biological replicate 1 of 4. strain C630E grown 19h in MS (reference) CD630_WT1-Cy3_sigG1-Cy5 wild-type MS medium [Clostridium] difficile EFO http://purl.obolibrary.org/obo/NCBITaxon_1496 C630E Mullany P-GSE43202-8 ArrayExpress P-GSE43202-4 ArrayExpress GSM1058179 extract 1 total RNA P-GSE43202-5 ArrayExpress GSM1058179 LE 1 Cy3 P-GSE43202-6 ArrayExpress GSM1058179 A-GEOD-10556 ArrayExpress array assay P-GSE43202-7 ArrayExpress GSM1058179_CD630_WT1-cy3_sigG1-cy5.gpr ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.raw.1.zip P-GSE43202-2 ArrayExpress GSM1058179_sample_table.txt norm GSM1058179_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.processed.1.zip wild-type C630E Mullany GSM1058179 2 Biological replicate 1 of 4. sigG mutant grown 19h in MS CD630_WT1-Cy3_sigG1-Cy5 sigG mutation MS medium [Clostridium] difficile EFO http://purl.obolibrary.org/obo/NCBITaxon_1496 C630E P-GSE43202-8 ArrayExpress P-GSE43202-4 ArrayExpress GSM1058179 extract 2 total RNA P-GSE43202-5 ArrayExpress GSM1058179 LE 2 Cy5 P-GSE43202-6 ArrayExpress GSM1058179 A-GEOD-10556 ArrayExpress array assay P-GSE43202-7 ArrayExpress GSM1058179_CD630_WT1-cy3_sigG1-cy5.gpr ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.raw.1.zip P-GSE43202-2 ArrayExpress GSM1058179_sample_table.txt norm GSM1058179_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.processed.1.zip sigG mutation C630E GSM1058178 1 Biological replicate 4 of 4. strain C630E grown 14h in MS (reference) CD630_WT4-Cy3_sigF4-Cy5 wild-type MS medium [Clostridium] difficile EFO http://purl.obolibrary.org/obo/NCBITaxon_1496 C630E Mullany P-GSE43202-3 ArrayExpress P-GSE43202-4 ArrayExpress GSM1058178 extract 1 total RNA P-GSE43202-5 ArrayExpress GSM1058178 LE 1 Cy3 P-GSE43202-6 ArrayExpress GSM1058178 A-GEOD-10556 ArrayExpress array assay P-GSE43202-7 ArrayExpress GSM1058178_CD630_WT4-cy3_sigF4-cy5.gpr ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.raw.1.zip P-GSE43202-2 ArrayExpress GSM1058178_sample_table.txt norm GSM1058178_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.processed.1.zip wild-type C630E Mullany GSM1058178 2 Biological replicate 4 of 4. sigF mutant grown 14h in MS CD630_WT4-Cy3_sigF4-Cy5 sigF mutation MS medium [Clostridium] difficile EFO http://purl.obolibrary.org/obo/NCBITaxon_1496 C630E P-GSE43202-3 ArrayExpress P-GSE43202-4 ArrayExpress GSM1058178 extract 2 total RNA P-GSE43202-5 ArrayExpress GSM1058178 LE 2 Cy5 P-GSE43202-6 ArrayExpress GSM1058178 A-GEOD-10556 ArrayExpress array assay P-GSE43202-7 ArrayExpress GSM1058178_CD630_WT4-cy3_sigF4-cy5.gpr ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.raw.1.zip P-GSE43202-2 ArrayExpress GSM1058178_sample_table.txt norm GSM1058178_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.processed.1.zip sigF mutation C630E GSM1058177 1 Biological replicate 3 of 4. strain C630E grown 14h in MS (reference) CD630_WT3-Cy3_sigF3-Cy5 wild-type MS medium [Clostridium] difficile EFO http://purl.obolibrary.org/obo/NCBITaxon_1496 C630E Mullany P-GSE43202-3 ArrayExpress P-GSE43202-4 ArrayExpress GSM1058177 extract 1 total RNA P-GSE43202-5 ArrayExpress GSM1058177 LE 1 Cy3 P-GSE43202-6 ArrayExpress GSM1058177 A-GEOD-10556 ArrayExpress array assay P-GSE43202-7 ArrayExpress GSM1058177_CD630_WT3-cy3_sigF3-cy5.gpr ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.raw.1.zip P-GSE43202-2 ArrayExpress GSM1058177_sample_table.txt norm GSM1058177_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.processed.1.zip wild-type C630E Mullany GSM1058177 2 Biological replicate 3 of 4. sigF mutant grown 14h in MS CD630_WT3-Cy3_sigF3-Cy5 sigF mutation MS medium [Clostridium] difficile EFO http://purl.obolibrary.org/obo/NCBITaxon_1496 C630E P-GSE43202-3 ArrayExpress P-GSE43202-4 ArrayExpress GSM1058177 extract 2 total RNA P-GSE43202-5 ArrayExpress GSM1058177 LE 2 Cy5 P-GSE43202-6 ArrayExpress GSM1058177 A-GEOD-10556 ArrayExpress array assay P-GSE43202-7 ArrayExpress GSM1058177_CD630_WT3-cy3_sigF3-cy5.gpr ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.raw.1.zip P-GSE43202-2 ArrayExpress GSM1058177_sample_table.txt norm GSM1058177_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.processed.1.zip sigF mutation C630E GSM1058176 2 Biological replicate 2 of 4. sigF mutant grown 14h in MS CD630_WT2-Cy5_sigF2-Cy3 sigF mutation MS medium [Clostridium] difficile EFO http://purl.obolibrary.org/obo/NCBITaxon_1496 C630E P-GSE43202-3 ArrayExpress P-GSE43202-4 ArrayExpress GSM1058176 extract 2 total RNA P-GSE43202-5 ArrayExpress GSM1058176 LE 2 Cy3 P-GSE43202-6 ArrayExpress GSM1058176 A-GEOD-10556 ArrayExpress array assay P-GSE43202-7 ArrayExpress GSM1058176_CD630_WT2-cy5_sigF2-cy3.gpr ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.raw.1.zip P-GSE43202-1 ArrayExpress GSM1058176_sample_table.txt norm GSM1058176_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.processed.1.zip sigF mutation C630E GSM1058176 1 Biological replicate 2 of 4. strain C630E grown 14h in MS (reference) CD630_WT2-Cy5_sigF2-Cy3 wild-type MS medium [Clostridium] difficile EFO http://purl.obolibrary.org/obo/NCBITaxon_1496 C630E Mullany P-GSE43202-3 ArrayExpress P-GSE43202-4 ArrayExpress GSM1058176 extract 1 total RNA P-GSE43202-5 ArrayExpress GSM1058176 LE 1 Cy5 P-GSE43202-6 ArrayExpress GSM1058176 A-GEOD-10556 ArrayExpress array assay P-GSE43202-7 ArrayExpress GSM1058176_CD630_WT2-cy5_sigF2-cy3.gpr ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.raw.1.zip P-GSE43202-1 ArrayExpress GSM1058176_sample_table.txt norm GSM1058176_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.processed.1.zip wild-type C630E Mullany GSM1058175 1 Biological replicate 1 of 4. strain C630E grown 14h in MS (reference) CD630_WT1-Cy5_sigF1-Cy3 wild-type MS medium [Clostridium] difficile EFO http://purl.obolibrary.org/obo/NCBITaxon_1496 C630E Mullany P-GSE43202-3 ArrayExpress P-GSE43202-4 ArrayExpress GSM1058175 extract 1 total RNA P-GSE43202-5 ArrayExpress GSM1058175 LE 1 Cy5 P-GSE43202-6 ArrayExpress GSM1058175 A-GEOD-10556 ArrayExpress array assay P-GSE43202-7 ArrayExpress GSM1058175_CD630_WT1-cy5_sigF1-cy3.gpr ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.raw.1.zip P-GSE43202-1 ArrayExpress GSM1058175_sample_table.txt norm GSM1058175_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.processed.1.zip wild-type C630E Mullany GSM1058175 2 Biological replicate 1 of 4. sigF mutant grown 14h in MS CD630_WT1-Cy5_sigF1-Cy3 sigF mutation MS medium [Clostridium] difficile EFO http://purl.obolibrary.org/obo/NCBITaxon_1496 C630E P-GSE43202-3 ArrayExpress P-GSE43202-4 ArrayExpress GSM1058175 extract 2 total RNA P-GSE43202-5 ArrayExpress GSM1058175 LE 2 Cy3 P-GSE43202-6 ArrayExpress GSM1058175 A-GEOD-10556 ArrayExpress array assay P-GSE43202-7 ArrayExpress GSM1058175_CD630_WT1-cy5_sigF1-cy3.gpr ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.raw.1.zip P-GSE43202-1 ArrayExpress GSM1058175_sample_table.txt norm GSM1058175_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.processed.1.zip sigF mutation C630E GSM1058174 2 Biological replicate 4 of 4. sigE mutant grown 14h in MS CD630_WT4-Cy3_sigE4-Cy5 sigE mutation MS medium [Clostridium] difficile EFO http://purl.obolibrary.org/obo/NCBITaxon_1496 C630E P-GSE43202-3 ArrayExpress P-GSE43202-4 ArrayExpress GSM1058174 extract 2 total RNA P-GSE43202-5 ArrayExpress GSM1058174 LE 2 Cy5 P-GSE43202-6 ArrayExpress GSM1058174 A-GEOD-10556 ArrayExpress array assay P-GSE43202-7 ArrayExpress GSM1058174_CD630_WT4-cy3_sigE4-cy5.gpr ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.raw.1.zip P-GSE43202-2 ArrayExpress GSM1058174_sample_table.txt norm GSM1058174_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.processed.1.zip sigE mutation C630E GSM1058174 1 Biological replicate 4 of 4. strain C630E grown 14h in MS (reference) CD630_WT4-Cy3_sigE4-Cy5 wild-type MS medium [Clostridium] difficile EFO http://purl.obolibrary.org/obo/NCBITaxon_1496 C630E Mullany P-GSE43202-3 ArrayExpress P-GSE43202-4 ArrayExpress GSM1058174 extract 1 total RNA P-GSE43202-5 ArrayExpress GSM1058174 LE 1 Cy3 P-GSE43202-6 ArrayExpress GSM1058174 A-GEOD-10556 ArrayExpress array assay P-GSE43202-7 ArrayExpress GSM1058174_CD630_WT4-cy3_sigE4-cy5.gpr ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.raw.1.zip P-GSE43202-2 ArrayExpress GSM1058174_sample_table.txt norm GSM1058174_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.processed.1.zip wild-type C630E Mullany GSM1058173 1 Biological replicate 3 of 4. strain C630E grown 14h in MS (reference) CD630_WT3-Cy3_sigE3-Cy5 wild-type MS medium [Clostridium] difficile EFO http://purl.obolibrary.org/obo/NCBITaxon_1496 C630E Mullany P-GSE43202-3 ArrayExpress P-GSE43202-4 ArrayExpress GSM1058173 extract 1 total RNA P-GSE43202-5 ArrayExpress GSM1058173 LE 1 Cy3 P-GSE43202-6 ArrayExpress GSM1058173 A-GEOD-10556 ArrayExpress array assay P-GSE43202-7 ArrayExpress GSM1058173_CD630_WT3-cy3_sigE3-cy5.gpr ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.raw.1.zip P-GSE43202-2 ArrayExpress GSM1058173_sample_table.txt norm GSM1058173_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.processed.1.zip wild-type C630E Mullany GSM1058173 2 Biological replicate 3 of 4. sigE mutant grown 14h in MS CD630_WT3-Cy3_sigE3-Cy5 sigE mutation MS medium [Clostridium] difficile EFO http://purl.obolibrary.org/obo/NCBITaxon_1496 C630E P-GSE43202-3 ArrayExpress P-GSE43202-4 ArrayExpress GSM1058173 extract 2 total RNA P-GSE43202-5 ArrayExpress GSM1058173 LE 2 Cy5 P-GSE43202-6 ArrayExpress GSM1058173 A-GEOD-10556 ArrayExpress array assay P-GSE43202-7 ArrayExpress GSM1058173_CD630_WT3-cy3_sigE3-cy5.gpr ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.raw.1.zip P-GSE43202-2 ArrayExpress GSM1058173_sample_table.txt norm GSM1058173_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.processed.1.zip sigE mutation C630E GSM1058172 2 Biological replicate 2 of 4. sigE mutant grown 14h in MS CD630_WT2-Cy5_sigE2-Cy3 sigE mutation MS medium [Clostridium] difficile EFO http://purl.obolibrary.org/obo/NCBITaxon_1496 C630E P-GSE43202-3 ArrayExpress P-GSE43202-4 ArrayExpress GSM1058172 extract 2 total RNA P-GSE43202-5 ArrayExpress GSM1058172 LE 2 Cy3 P-GSE43202-6 ArrayExpress GSM1058172 A-GEOD-10556 ArrayExpress array assay P-GSE43202-7 ArrayExpress GSM1058172_CD630_WT2-cy5_sigE2-cy3.gpr ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.raw.1.zip P-GSE43202-1 ArrayExpress GSM1058172_sample_table.txt norm GSM1058172_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.processed.1.zip sigE mutation C630E GSM1058172 1 Biological replicate 2 of 4. strain C630E grown 14h in MS (reference) CD630_WT2-Cy5_sigE2-Cy3 wild-type MS medium [Clostridium] difficile EFO http://purl.obolibrary.org/obo/NCBITaxon_1496 C630E Mullany P-GSE43202-3 ArrayExpress P-GSE43202-4 ArrayExpress GSM1058172 extract 1 total RNA P-GSE43202-5 ArrayExpress GSM1058172 LE 1 Cy5 P-GSE43202-6 ArrayExpress GSM1058172 A-GEOD-10556 ArrayExpress array assay P-GSE43202-7 ArrayExpress GSM1058172_CD630_WT2-cy5_sigE2-cy3.gpr ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.raw.1.zip P-GSE43202-1 ArrayExpress GSM1058172_sample_table.txt norm GSM1058172_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.processed.1.zip wild-type C630E Mullany GSM1058171 2 Biological replicate 1 of 4. sigE mutant grown 14h in MS CD630_WT1-Cy5_sigE1-Cy3 sigE mutation MS medium [Clostridium] difficile EFO http://purl.obolibrary.org/obo/NCBITaxon_1496 C630E P-GSE43202-3 ArrayExpress P-GSE43202-4 ArrayExpress GSM1058171 extract 2 total RNA P-GSE43202-5 ArrayExpress GSM1058171 LE 2 Cy3 P-GSE43202-6 ArrayExpress GSM1058171 A-GEOD-10556 ArrayExpress array assay P-GSE43202-7 ArrayExpress GSM1058171_CD630_WT1-cy5_sigE1-cy3.gpr ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.raw.1.zip P-GSE43202-1 ArrayExpress GSM1058171_sample_table.txt norm GSM1058171_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.processed.1.zip sigE mutation C630E GSM1058171 1 Biological replicate 1 of 4. strain C630E grown 14h in MS (reference) CD630_WT1-Cy5_sigE1-Cy3 wild-type MS medium [Clostridium] difficile EFO http://purl.obolibrary.org/obo/NCBITaxon_1496 C630E Mullany P-GSE43202-3 ArrayExpress P-GSE43202-4 ArrayExpress GSM1058171 extract 1 total RNA P-GSE43202-5 ArrayExpress GSM1058171 LE 1 Cy5 P-GSE43202-6 ArrayExpress GSM1058171 A-GEOD-10556 ArrayExpress array assay P-GSE43202-7 ArrayExpress GSM1058171_CD630_WT1-cy5_sigE1-cy3.gpr ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.raw.1.zip P-GSE43202-1 ArrayExpress GSM1058171_sample_table.txt norm GSM1058171_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43202/E-GEOD-43202.processed.1.zip wild-type C630E Mullany