Source Name	Characteristics [organism]	Term Source REF	Term Accession Number	Characteristics [organism part]	Description	Comment [ENA_SAMPLE]	Comment [Sample_source_name]	Comment [Sample_title]	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Extract Name	Comment [INSTRUMENT_MODEL]	Comment [LIBRARY_LAYOUT]	Comment [LIBRARY_SELECTION]	Comment [LIBRARY_SOURCE]	Comment [LIBRARY_STRATEGY]	Material Type	Assay Name	Comment [ENA_EXPERIMENT]	Comment [Platform_title]	Technology Type	Protocol REF	Term Source REF	Scan Name	Comment [ENA_RUN]	Comment [FASTQ_URI]	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	FactorValue [organism part]
GSM1052964 1	Brassica oleracea	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3712	flower bud	Sequenced reads were generated from bud tissue of the same size (length 0.8cm)	SRS379454	Bud tissues of Brassica oleracea	Bol-Bud	P-GSE42891-1	ArrayExpress	P-GSE42891-2	ArrayExpress	P-GSE42891-3	ArrayExpress	GSM1052964 extract 1	Illumina HiSeq 2000	PAIRED	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1052964	SRX209697	Illumina HiSeq 2000 (Brassica oleracea)	sequencing assay	P-GSE42891-4	ArrayExpress	SRR630928	SRR630928	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR630/SRR630928/SRR630928_1.fastq.gz	GSM1052964_bud_coverage.bedgraph	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42891/E-GEOD-42891.processed.1.zip	flower bud
GSM1052964 1	Brassica oleracea	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3712	flower bud	Sequenced reads were generated from bud tissue of the same size (length 0.8cm)	SRS379454	Bud tissues of Brassica oleracea	Bol-Bud	P-GSE42891-1	ArrayExpress	P-GSE42891-2	ArrayExpress	P-GSE42891-3	ArrayExpress	GSM1052964 extract 1	Illumina HiSeq 2000	PAIRED	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1052964	SRX209697	Illumina HiSeq 2000 (Brassica oleracea)	sequencing assay	P-GSE42891-4	ArrayExpress	SRR630928	SRR630928	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR630/SRR630928/SRR630928_2.fastq.gz	GSM1052964_bud_coverage.bedgraph	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42891/E-GEOD-42891.processed.1.zip	flower bud
GSM1052963 1	Brassica oleracea	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3712	stem	Sequenced reads were generated from stem tissue of 7-week old Brassica oleracea plant	SRS379453	Stem tissues of Brassica oleracea	Bol-Stem	P-GSE42891-1	ArrayExpress	P-GSE42891-2	ArrayExpress	P-GSE42891-3	ArrayExpress	GSM1052963 extract 1	Illumina HiSeq 2000	PAIRED	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1052963	SRX209696	Illumina HiSeq 2000 (Brassica oleracea)	sequencing assay	P-GSE42891-4	ArrayExpress	SRR630927	SRR630927	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR630/SRR630927/SRR630927_1.fastq.gz	GSM1052963_stalk_coverage.bedgraph	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42891/E-GEOD-42891.processed.2.zip	stem
GSM1052963 1	Brassica oleracea	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3712	stem	Sequenced reads were generated from stem tissue of 7-week old Brassica oleracea plant	SRS379453	Stem tissues of Brassica oleracea	Bol-Stem	P-GSE42891-1	ArrayExpress	P-GSE42891-2	ArrayExpress	P-GSE42891-3	ArrayExpress	GSM1052963 extract 1	Illumina HiSeq 2000	PAIRED	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1052963	SRX209696	Illumina HiSeq 2000 (Brassica oleracea)	sequencing assay	P-GSE42891-4	ArrayExpress	SRR630927	SRR630927	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR630/SRR630927/SRR630927_2.fastq.gz	GSM1052963_stalk_coverage.bedgraph	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42891/E-GEOD-42891.processed.2.zip	stem
GSM1052962 1	Brassica oleracea	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3712	fruit	Sequenced reads were generated from Silique tissue of 15-day after pollination	SRS379452	Silique tissues of Brassica oleracea	Bol-Silique	P-GSE42891-1	ArrayExpress	P-GSE42891-2	ArrayExpress	P-GSE42891-3	ArrayExpress	GSM1052962 extract 1	Illumina HiSeq 2000	PAIRED	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1052962	SRX209695	Illumina HiSeq 2000 (Brassica oleracea)	sequencing assay	P-GSE42891-4	ArrayExpress	SRR630926	SRR630926	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR630/SRR630926/SRR630926_1.fastq.gz	GSM1052962_silique_coverage.bedgraph	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42891/E-GEOD-42891.processed.2.zip	fruit
GSM1052962 1	Brassica oleracea	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3712	fruit	Sequenced reads were generated from Silique tissue of 15-day after pollination	SRS379452	Silique tissues of Brassica oleracea	Bol-Silique	P-GSE42891-1	ArrayExpress	P-GSE42891-2	ArrayExpress	P-GSE42891-3	ArrayExpress	GSM1052962 extract 1	Illumina HiSeq 2000	PAIRED	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1052962	SRX209695	Illumina HiSeq 2000 (Brassica oleracea)	sequencing assay	P-GSE42891-4	ArrayExpress	SRR630926	SRR630926	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR630/SRR630926/SRR630926_2.fastq.gz	GSM1052962_silique_coverage.bedgraph	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42891/E-GEOD-42891.processed.2.zip	fruit
GSM1052961 1	Brassica oleracea	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3712	root	Sequenced reads were generated from root tissue of 7-week old Brassica oleracea plant	SRS379451	Root tissues of Brassica oleracea	Bol-Root	P-GSE42891-1	ArrayExpress	P-GSE42891-2	ArrayExpress	P-GSE42891-3	ArrayExpress	GSM1052961 extract 1	Illumina HiSeq 2000	PAIRED	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1052961	SRX209694	Illumina HiSeq 2000 (Brassica oleracea)	sequencing assay	P-GSE42891-4	ArrayExpress	SRR630925	SRR630925	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR630/SRR630925/SRR630925_1.fastq.gz	GSM1052961_root_coverage.bedgraph	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42891/E-GEOD-42891.processed.3.zip	root
GSM1052961 1	Brassica oleracea	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3712	root	Sequenced reads were generated from root tissue of 7-week old Brassica oleracea plant	SRS379451	Root tissues of Brassica oleracea	Bol-Root	P-GSE42891-1	ArrayExpress	P-GSE42891-2	ArrayExpress	P-GSE42891-3	ArrayExpress	GSM1052961 extract 1	Illumina HiSeq 2000	PAIRED	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1052961	SRX209694	Illumina HiSeq 2000 (Brassica oleracea)	sequencing assay	P-GSE42891-4	ArrayExpress	SRR630925	SRR630925	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR630/SRR630925/SRR630925_2.fastq.gz	GSM1052961_root_coverage.bedgraph	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42891/E-GEOD-42891.processed.3.zip	root
GSM1052960 1	Brassica oleracea	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3712	leaf	Sequenced reads were generated from leaf tissue of 7-week old Brassica oleracea plant	SRS379450	Leaf tissues of Brassica oleracea	Bol-Leaf	P-GSE42891-1	ArrayExpress	P-GSE42891-2	ArrayExpress	P-GSE42891-3	ArrayExpress	GSM1052960 extract 1	Illumina HiSeq 2000	PAIRED	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1052960	SRX209693	Illumina HiSeq 2000 (Brassica oleracea)	sequencing assay	P-GSE42891-4	ArrayExpress	SRR630924	SRR630924	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR630/SRR630924/SRR630924_1.fastq.gz	GSM1052960_leaf_coverage.bedgraph	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42891/E-GEOD-42891.processed.3.zip	leaf
GSM1052960 1	Brassica oleracea	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3712	leaf	Sequenced reads were generated from leaf tissue of 7-week old Brassica oleracea plant	SRS379450	Leaf tissues of Brassica oleracea	Bol-Leaf	P-GSE42891-1	ArrayExpress	P-GSE42891-2	ArrayExpress	P-GSE42891-3	ArrayExpress	GSM1052960 extract 1	Illumina HiSeq 2000	PAIRED	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1052960	SRX209693	Illumina HiSeq 2000 (Brassica oleracea)	sequencing assay	P-GSE42891-4	ArrayExpress	SRR630924	SRR630924	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR630/SRR630924/SRR630924_2.fastq.gz	GSM1052960_leaf_coverage.bedgraph	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42891/E-GEOD-42891.processed.3.zip	leaf
GSM1052959 1	Brassica oleracea	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3712	flower	Sequenced reads were generated from flower tissue, blooming in the same day without floral shoot	SRS379449	Flower tissues of Brassica oleracea	Bol-Flower	P-GSE42891-1	ArrayExpress	P-GSE42891-2	ArrayExpress	P-GSE42891-3	ArrayExpress	GSM1052959 extract 1	Illumina HiSeq 2000	PAIRED	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1052959	SRX209692	Illumina HiSeq 2000 (Brassica oleracea)	sequencing assay	P-GSE42891-4	ArrayExpress	SRR630923	SRR630923	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR630/SRR630923/SRR630923_1.fastq.gz	GSM1052959_flower_coverage.bedgraph	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42891/E-GEOD-42891.processed.4.zip	flower
GSM1052959 1	Brassica oleracea	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3712	flower	Sequenced reads were generated from flower tissue, blooming in the same day without floral shoot	SRS379449	Flower tissues of Brassica oleracea	Bol-Flower	P-GSE42891-1	ArrayExpress	P-GSE42891-2	ArrayExpress	P-GSE42891-3	ArrayExpress	GSM1052959 extract 1	Illumina HiSeq 2000	PAIRED	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1052959	SRX209692	Illumina HiSeq 2000 (Brassica oleracea)	sequencing assay	P-GSE42891-4	ArrayExpress	SRR630923	SRR630923	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR630/SRR630923/SRR630923_2.fastq.gz	GSM1052959_flower_coverage.bedgraph	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42891/E-GEOD-42891.processed.4.zip	flower
GSM1052958 1	Brassica oleracea	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3712	plant callus	Sequenced reads were generated from callus tissue using tissue culture	SRS379448	Callus tissues of Brassica oleracea	Bol-Callus	P-GSE42891-1	ArrayExpress	P-GSE42891-2	ArrayExpress	P-GSE42891-3	ArrayExpress	GSM1052958 extract 1	Illumina HiSeq 2000	PAIRED	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1052958	SRX209691	Illumina HiSeq 2000 (Brassica oleracea)	sequencing assay	P-GSE42891-4	ArrayExpress	SRR630922	SRR630922	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR630/SRR630922/SRR630922_1.fastq.gz	GSM1052958_callus_coverage.bedgraph	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42891/E-GEOD-42891.processed.4.zip	plant callus
GSM1052958 1	Brassica oleracea	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3712	plant callus	Sequenced reads were generated from callus tissue using tissue culture	SRS379448	Callus tissues of Brassica oleracea	Bol-Callus	P-GSE42891-1	ArrayExpress	P-GSE42891-2	ArrayExpress	P-GSE42891-3	ArrayExpress	GSM1052958 extract 1	Illumina HiSeq 2000	PAIRED	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1052958	SRX209691	Illumina HiSeq 2000 (Brassica oleracea)	sequencing assay	P-GSE42891-4	ArrayExpress	SRR630922	SRR630922	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR630/SRR630922/SRR630922_2.fastq.gz	GSM1052958_callus_coverage.bedgraph	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42891/E-GEOD-42891.processed.4.zip	plant callus