Source Name Comment [Sample_description] Comment [Sample_source_name] Comment [Sample_title] Characteristics [capsule phenotype] Characteristics [cell type] Characteristics [infected with] Characteristics [organism] Term Source REF Term Accession Number Characteristics [pathology] Term Source REF Term Accession Number Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Extract Name Material Type Protocol REF Term Source REF Labeled Extract Name Label Protocol REF Term Source REF Assay Name Array Design REF Term Source REF Technology Type Protocol REF Term Source REF Array Data File Comment [ArrayExpress FTP file] Protocol REF Term Source REF Normalization Name Derived Array Data File Comment [Derived ArrayExpress FTP file] FactorValue [CAPSULE PHENOTYPE] FactorValue [INFECTED WITH] FactorValue [PATHOLOGY] Term Source REF Term Accession Number GSM1052598 1 uninfected HIBCPP control cells; replicate 3 HIBCPP-untreated #3 untreated HIBCPP cells control3 Human malignant choroid plexus papilloma (HIBCPP) cells none (control) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 control EFO EFO_0001461 P-GSE42870-2 ArrayExpress P-GSE42870-3 ArrayExpress P-GSE42870-4 ArrayExpress GSM1052598 extract 1 total RNA P-GSE42870-5 ArrayExpress GSM1052598 LE 1 biotin P-GSE42870-6 ArrayExpress GSM1052598 A-GEOD-16372 ArrayExpress array assay P-GSE42870-7 ArrayExpress GSM1052598_S0726_kontrolle.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42870/E-GEOD-42870.raw.1.zip P-GSE42870-1 ArrayExpress GSM1052598_sample_table.txt norm GSM1052598_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42870/E-GEOD-42870.processed.1.zip not specified none (control) control EFO EFO_0001461 GSM1052597 1 HIBCPP cells infected basolaterally for 4 h with Neisseria meningitidis carrier isolate strain α14; replicate 3 HIBCPP + a14 #3 HIBCPP cells infected for 4 h with strain α14 bac_control3 non-capsulated mutant Human malignant choroid plexus papilloma (HIBCPP) cells α14 strain for 4h Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 apatho P-GSE42870-2 ArrayExpress P-GSE42870-3 ArrayExpress P-GSE42870-4 ArrayExpress GSM1052597 extract 1 total RNA P-GSE42870-5 ArrayExpress GSM1052597 LE 1 biotin P-GSE42870-6 ArrayExpress GSM1052597 A-GEOD-16372 ArrayExpress array assay P-GSE42870-7 ArrayExpress GSM1052597_S0726_alpha14.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42870/E-GEOD-42870.raw.1.zip P-GSE42870-1 ArrayExpress GSM1052597_sample_table.txt norm GSM1052597_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42870/E-GEOD-42870.processed.1.zip non-capsulated mutant α14 strain for 4h apatho GSM1052596 1 HIBCPP cells infected basolaterally for 4 h with non-encapsulated mutant of Neisseria meningitidis disease isolate strain MC58 (strain MC58siaD-); replicate 3 HIBCPP + MC58siaD- #3 HIBCPP cells infected for 4 h with strain MC58siaD- mut3 non-capsulated mutant Human malignant choroid plexus papilloma (HIBCPP) cells MC58siaD- strain for 4h Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 path P-GSE42870-2 ArrayExpress P-GSE42870-3 ArrayExpress P-GSE42870-4 ArrayExpress GSM1052596 extract 1 total RNA P-GSE42870-5 ArrayExpress GSM1052596 LE 1 biotin P-GSE42870-6 ArrayExpress GSM1052596 A-GEOD-16372 ArrayExpress array assay P-GSE42870-7 ArrayExpress GSM1052596_S0726_2425_5x.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42870/E-GEOD-42870.raw.1.zip P-GSE42870-1 ArrayExpress GSM1052596_sample_table.txt norm GSM1052596_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42870/E-GEOD-42870.processed.1.zip non-capsulated mutant MC58siaD- strain for 4h path GSM1052595 1 HIBCPP cells infected basolaterally for 4 h with Neisseria meningitidis disease isolate strain MC58; replicate 3 HIBCPP + MC58 #3 HIBCPP cells infected for 4 h with strain MC58 wt3 capsulated Human malignant choroid plexus papilloma (HIBCPP) cells MC58 strain for 4h Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 path P-GSE42870-2 ArrayExpress P-GSE42870-3 ArrayExpress P-GSE42870-4 ArrayExpress GSM1052595 extract 1 total RNA P-GSE42870-5 ArrayExpress GSM1052595 LE 1 biotin P-GSE42870-6 ArrayExpress GSM1052595 A-GEOD-16372 ArrayExpress array assay P-GSE42870-7 ArrayExpress GSM1052595_S0726_2135_2_5x.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42870/E-GEOD-42870.raw.1.zip P-GSE42870-1 ArrayExpress GSM1052595_sample_table.txt norm GSM1052595_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42870/E-GEOD-42870.processed.1.zip capsulated MC58 strain for 4h path GSM1052594 1 uninfected HIBCPP control cells; replicate 2 HIBCPP-untreated #2 untreated HIBCPP cells control2 Human malignant choroid plexus papilloma (HIBCPP) cells none (control) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 control EFO EFO_0001461 P-GSE42870-2 ArrayExpress P-GSE42870-3 ArrayExpress P-GSE42870-4 ArrayExpress GSM1052594 extract 1 total RNA P-GSE42870-5 ArrayExpress GSM1052594 LE 1 biotin P-GSE42870-6 ArrayExpress GSM1052594 A-GEOD-16372 ArrayExpress array assay P-GSE42870-7 ArrayExpress GSM1052594_S0719_kontrolle.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42870/E-GEOD-42870.raw.1.zip P-GSE42870-1 ArrayExpress GSM1052594_sample_table.txt norm GSM1052594_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42870/E-GEOD-42870.processed.1.zip not specified none (control) control EFO EFO_0001461 GSM1052593 1 HIBCPP cells infected basolaterally for 4 h with Neisseria meningitidis carrier isolate strain α14; replicate 2 HIBCPP + a14 #2 HIBCPP cells infected for 4 h with strain α14 bac_control2 non-capsulated mutant Human malignant choroid plexus papilloma (HIBCPP) cells α14 strain for 4h Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 apatho P-GSE42870-2 ArrayExpress P-GSE42870-3 ArrayExpress P-GSE42870-4 ArrayExpress GSM1052593 extract 1 total RNA P-GSE42870-5 ArrayExpress GSM1052593 LE 1 biotin P-GSE42870-6 ArrayExpress GSM1052593 A-GEOD-16372 ArrayExpress array assay P-GSE42870-7 ArrayExpress GSM1052593_S0719_alpha14.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42870/E-GEOD-42870.raw.1.zip P-GSE42870-1 ArrayExpress GSM1052593_sample_table.txt norm GSM1052593_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42870/E-GEOD-42870.processed.1.zip non-capsulated mutant α14 strain for 4h apatho GSM1052592 1 HIBCPP cells infected basolaterally for 4 h with non-encapsulated mutant of Neisseria meningitidis disease isolate strain MC58 (strain MC58siaD-); replicate 2 HIBCPP + MC58siaD- #2 HIBCPP cells infected for 4 h with strain MC58siaD- mut2 non-capsulated mutant Human malignant choroid plexus papilloma (HIBCPP) cells MC58siaD- strain for 4h Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 path P-GSE42870-2 ArrayExpress P-GSE42870-3 ArrayExpress P-GSE42870-4 ArrayExpress GSM1052592 extract 1 total RNA P-GSE42870-5 ArrayExpress GSM1052592 LE 1 biotin P-GSE42870-6 ArrayExpress GSM1052592 A-GEOD-16372 ArrayExpress array assay P-GSE42870-7 ArrayExpress GSM1052592_S0719_2425_5x.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42870/E-GEOD-42870.raw.1.zip P-GSE42870-1 ArrayExpress GSM1052592_sample_table.txt norm GSM1052592_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42870/E-GEOD-42870.processed.1.zip non-capsulated mutant MC58siaD- strain for 4h path GSM1052591 1 HIBCPP cells infected basolaterally for 4 h with Neisseria meningitidis disease isolate strain MC58; replicate 2 HIBCPP + MC58 #2 HIBCPP cells infected for 4 h with strain MC58 wt2 capsulated Human malignant choroid plexus papilloma (HIBCPP) cells MC58 strain for 4h Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 path P-GSE42870-2 ArrayExpress P-GSE42870-3 ArrayExpress P-GSE42870-4 ArrayExpress GSM1052591 extract 1 total RNA P-GSE42870-5 ArrayExpress GSM1052591 LE 1 biotin P-GSE42870-6 ArrayExpress GSM1052591 A-GEOD-16372 ArrayExpress array assay P-GSE42870-7 ArrayExpress GSM1052591_S0719_2135_2_5x.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42870/E-GEOD-42870.raw.1.zip P-GSE42870-1 ArrayExpress GSM1052591_sample_table.txt norm GSM1052591_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42870/E-GEOD-42870.processed.1.zip capsulated MC58 strain for 4h path GSM1052590 1 uninfected HIBCPP control cells; replicate 1 HIBCPP-untreated #1 untreated HIBCPP cells control1 Human malignant choroid plexus papilloma (HIBCPP) cells none (control) Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 control EFO EFO_0001461 P-GSE42870-2 ArrayExpress P-GSE42870-3 ArrayExpress P-GSE42870-4 ArrayExpress GSM1052590 extract 1 total RNA P-GSE42870-5 ArrayExpress GSM1052590 LE 1 biotin P-GSE42870-6 ArrayExpress GSM1052590 A-GEOD-16372 ArrayExpress array assay P-GSE42870-7 ArrayExpress GSM1052590_S0712_kontrolle.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42870/E-GEOD-42870.raw.1.zip P-GSE42870-1 ArrayExpress GSM1052590_sample_table.txt norm GSM1052590_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42870/E-GEOD-42870.processed.1.zip not specified none (control) control EFO EFO_0001461 GSM1052589 1 HIBCPP cells infected basolaterally for 4 h with Neisseria meningitidis carrier isolate strain α14; replicate 1 HIBCPP + a14 #1 HIBCPP cells infected for 4 h with strain α14 bac_control1 non-capsulated mutant Human malignant choroid plexus papilloma (HIBCPP) cells α14 strain for 4h Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 apatho P-GSE42870-2 ArrayExpress P-GSE42870-3 ArrayExpress P-GSE42870-4 ArrayExpress GSM1052589 extract 1 total RNA P-GSE42870-5 ArrayExpress GSM1052589 LE 1 biotin P-GSE42870-6 ArrayExpress GSM1052589 A-GEOD-16372 ArrayExpress array assay P-GSE42870-7 ArrayExpress GSM1052589_S0712_alpha14.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42870/E-GEOD-42870.raw.1.zip P-GSE42870-1 ArrayExpress GSM1052589_sample_table.txt norm GSM1052589_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42870/E-GEOD-42870.processed.1.zip non-capsulated mutant α14 strain for 4h apatho GSM1052588 1 HIBCPP cells infected basolaterally for 4 h with non-encapsulated mutant of Neisseria meningitidis disease isolate strain MC58 (strain MC58siaD-); replicate 1 HIBCPP + MC58siaD- #1 HIBCPP cells infected for 4 h with strain MC58siaD- mut1 non-capsulated mutant Human malignant choroid plexus papilloma (HIBCPP) cells MC58siaD- strain for 4h Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 path P-GSE42870-2 ArrayExpress P-GSE42870-3 ArrayExpress P-GSE42870-4 ArrayExpress GSM1052588 extract 1 total RNA P-GSE42870-5 ArrayExpress GSM1052588 LE 1 biotin P-GSE42870-6 ArrayExpress GSM1052588 A-GEOD-16372 ArrayExpress array assay P-GSE42870-7 ArrayExpress GSM1052588_S0712_2425_5x.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42870/E-GEOD-42870.raw.1.zip P-GSE42870-1 ArrayExpress GSM1052588_sample_table.txt norm GSM1052588_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42870/E-GEOD-42870.processed.1.zip non-capsulated mutant MC58siaD- strain for 4h path GSM1052587 1 HIBCPP cells infected basolaterally for 4 h with Neisseria meningitidis disease isolate strain MC58; replicate 1 HIBCPP + MC58 #1 HIBCPP cells infected for 4 h with strain MC58 wt1 capsulated Human malignant choroid plexus papilloma (HIBCPP) cells MC58 strain for 4h Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 path P-GSE42870-2 ArrayExpress P-GSE42870-3 ArrayExpress P-GSE42870-4 ArrayExpress GSM1052587 extract 1 total RNA P-GSE42870-5 ArrayExpress GSM1052587 LE 1 biotin P-GSE42870-6 ArrayExpress GSM1052587 A-GEOD-16372 ArrayExpress array assay P-GSE42870-7 ArrayExpress GSM1052587_S0712_2135_2_5x.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42870/E-GEOD-42870.raw.1.zip P-GSE42870-1 ArrayExpress GSM1052587_sample_table.txt norm GSM1052587_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42870/E-GEOD-42870.processed.1.zip capsulated MC58 strain for 4h path