Source Name	Comment [Sample_description]	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [age]	Characteristics [genotype]	Characteristics [organism]	Term Source REF	Term Accession Number	Characteristics [organism part]	Term Source REF	Term Accession Number	Characteristics [sex]	Term Source REF	Term Accession Number	Characteristics [strain/background]	Term Source REF	Term Accession Number	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Extract Name	Material Type	Protocol REF	Term Source REF	Labeled Extract Name	Label	Protocol REF	Term Source REF	Assay Name	Array Design REF	Term Source REF	Technology Type	Protocol REF	Term Source REF	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Term Source REF	Normalization Name	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	FactorValue [GENOTYPE]	FactorValue [TREATMENT]
GSM1051474 1	PRKO_E+EP24h3 Gene expression data from progesterone receptor null mouse mammary glands after hormone treatment.	Mammary glands of 10-week-old progesterone receptor null mice treated with E+EP24h	Progesterone receptor null mice treated with E+EP24h, biological rep 3	10 weeks	progesterone receptor null	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	mammary gland	EFO	http://purl.obolibrary.org/obo/UBERON_0001911	female	EFO	EFO_0001265	BALB/c	EFO	EFO_0000602	P-GSE42858-2	ArrayExpress	P-GSE42858-3	ArrayExpress	P-GSE42858-4	ArrayExpress	GSM1051474 extract 1	total RNA	P-GSE42858-5	ArrayExpress	GSM1051474 LE 1	biotin	P-GSE42858-6	ArrayExpress	GSM1051474	A-AFFY-45	ArrayExpress	array assay	P-GSE42858-7	ArrayExpress	GSM1051474_Mouse_PRKO_E+EP24h3.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42858/E-GEOD-42858.raw.1.zip	P-GSE42858-1	ArrayExpress	GSM1051474_sample_table.txt norm	GSM1051474_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42858/E-GEOD-42858.processed.1.zip	progesterone receptor null	17β-estradiol for 24 hours and then 17β-estradiol plus progesterone for 24 hrs
GSM1051473 1	PRKO_E+EP24h2 Gene expression data from progesterone receptor null mouse mammary glands after hormone treatment.	Mammary glands of 10-week-old progesterone receptor null mice treated with E+EP24h	Progesterone receptor null mice treated with E+EP24h, biological rep 2	10 weeks	progesterone receptor null	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	mammary gland	EFO	http://purl.obolibrary.org/obo/UBERON_0001911	female	EFO	EFO_0001265	BALB/c	EFO	EFO_0000602	P-GSE42858-2	ArrayExpress	P-GSE42858-3	ArrayExpress	P-GSE42858-4	ArrayExpress	GSM1051473 extract 1	total RNA	P-GSE42858-5	ArrayExpress	GSM1051473 LE 1	biotin	P-GSE42858-6	ArrayExpress	GSM1051473	A-AFFY-45	ArrayExpress	array assay	P-GSE42858-7	ArrayExpress	GSM1051473_Mouse_PRKO_E+EP24h2.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42858/E-GEOD-42858.raw.1.zip	P-GSE42858-1	ArrayExpress	GSM1051473_sample_table.txt norm	GSM1051473_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42858/E-GEOD-42858.processed.1.zip	progesterone receptor null	17β-estradiol for 24 hours and then 17β-estradiol plus progesterone for 24 hrs
GSM1051472 1	PRKO_E+EP24h1 Gene expression data from progesterone receptor null mouse mammary glands after hormone treatment.	Mammary glands of 10-week-old progesterone receptor null mice treated with E+EP24h	Progesterone receptor null mice treated with E+EP24h, biological rep 1	10 weeks	progesterone receptor null	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	mammary gland	EFO	http://purl.obolibrary.org/obo/UBERON_0001911	female	EFO	EFO_0001265	BALB/c	EFO	EFO_0000602	P-GSE42858-2	ArrayExpress	P-GSE42858-3	ArrayExpress	P-GSE42858-4	ArrayExpress	GSM1051472 extract 1	total RNA	P-GSE42858-5	ArrayExpress	GSM1051472 LE 1	biotin	P-GSE42858-6	ArrayExpress	GSM1051472	A-AFFY-45	ArrayExpress	array assay	P-GSE42858-7	ArrayExpress	GSM1051472_Mouse_PRKO_E+EP24h1.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42858/E-GEOD-42858.raw.1.zip	P-GSE42858-1	ArrayExpress	GSM1051472_sample_table.txt norm	GSM1051472_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42858/E-GEOD-42858.processed.1.zip	progesterone receptor null	17β-estradiol for 24 hours and then 17β-estradiol plus progesterone for 24 hrs
GSM1051471 1	WT_E+EP24h3 Gene expression data from wildtype mouse mammary glands after hormone treatment.	Mammary glands of 10-week-old wildtype mice treated with E+EP24h	Wildtype mice treated with E+EP24h, biological rep 3	10 weeks	wildtype	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	mammary gland	EFO	http://purl.obolibrary.org/obo/UBERON_0001911	female	EFO	EFO_0001265	BALB/c	EFO	EFO_0000602	P-GSE42858-2	ArrayExpress	P-GSE42858-3	ArrayExpress	P-GSE42858-4	ArrayExpress	GSM1051471 extract 1	total RNA	P-GSE42858-5	ArrayExpress	GSM1051471 LE 1	biotin	P-GSE42858-6	ArrayExpress	GSM1051471	A-AFFY-45	ArrayExpress	array assay	P-GSE42858-7	ArrayExpress	GSM1051471_Mouse_WT_E+EP24h3.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42858/E-GEOD-42858.raw.1.zip	P-GSE42858-1	ArrayExpress	GSM1051471_sample_table.txt norm	GSM1051471_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42858/E-GEOD-42858.processed.1.zip	wildtype	17β-estradiol for 24 hours and then 17β-estradiol plus progesterone for 24 hrs
GSM1051470 1	WT_E+EP24h2 Gene expression data from wildtype mouse mammary glands after hormone treatment.	Mammary glands of 10-week-old wildtype mice treated with E+EP24h	Wildtype mice treated with E+EP24h, biological rep 2	10 weeks	wildtype	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	mammary gland	EFO	http://purl.obolibrary.org/obo/UBERON_0001911	female	EFO	EFO_0001265	BALB/c	EFO	EFO_0000602	P-GSE42858-2	ArrayExpress	P-GSE42858-3	ArrayExpress	P-GSE42858-4	ArrayExpress	GSM1051470 extract 1	total RNA	P-GSE42858-5	ArrayExpress	GSM1051470 LE 1	biotin	P-GSE42858-6	ArrayExpress	GSM1051470	A-AFFY-45	ArrayExpress	array assay	P-GSE42858-7	ArrayExpress	GSM1051470_Mouse_WT_E+EP24h2.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42858/E-GEOD-42858.raw.1.zip	P-GSE42858-1	ArrayExpress	GSM1051470_sample_table.txt norm	GSM1051470_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42858/E-GEOD-42858.processed.1.zip	wildtype	17β-estradiol for 24 hours and then 17β-estradiol plus progesterone for 24 hrs
GSM1051469 1	WT_E+EP24h1 Gene expression data from wildtype mouse mammary glands after hormone treatment.	Mammary glands of 10-week-old wildtype mice treated with E+EP24h	Wildtype mice treated with E+EP24h, biological rep 1	10 weeks	wildtype	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	mammary gland	EFO	http://purl.obolibrary.org/obo/UBERON_0001911	female	EFO	EFO_0001265	BALB/c	EFO	EFO_0000602	P-GSE42858-2	ArrayExpress	P-GSE42858-3	ArrayExpress	P-GSE42858-4	ArrayExpress	GSM1051469 extract 1	total RNA	P-GSE42858-5	ArrayExpress	GSM1051469 LE 1	biotin	P-GSE42858-6	ArrayExpress	GSM1051469	A-AFFY-45	ArrayExpress	array assay	P-GSE42858-7	ArrayExpress	GSM1051469_Mouse_WT_E+EP24h1.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42858/E-GEOD-42858.raw.1.zip	P-GSE42858-1	ArrayExpress	GSM1051469_sample_table.txt norm	GSM1051469_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42858/E-GEOD-42858.processed.1.zip	wildtype	17β-estradiol for 24 hours and then 17β-estradiol plus progesterone for 24 hrs
GSM1051468 1	PRKO_E+EP8h3 Gene expression data from progesterone receptor null mouse mammary glands after hormone treatment.	Mammary glands of 10-week-old progesterone receptor null mice treated with E+EP8h	Progesterone receptor null mice treated with E+EP8h, biological rep 3	10 weeks	progesterone receptor null	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	mammary gland	EFO	http://purl.obolibrary.org/obo/UBERON_0001911	female	EFO	EFO_0001265	BALB/c	EFO	EFO_0000602	P-GSE42858-2	ArrayExpress	P-GSE42858-3	ArrayExpress	P-GSE42858-4	ArrayExpress	GSM1051468 extract 1	total RNA	P-GSE42858-5	ArrayExpress	GSM1051468 LE 1	biotin	P-GSE42858-6	ArrayExpress	GSM1051468	A-AFFY-45	ArrayExpress	array assay	P-GSE42858-7	ArrayExpress	GSM1051468_Mouse_PRKO_E+EP8h3.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42858/E-GEOD-42858.raw.1.zip	P-GSE42858-1	ArrayExpress	GSM1051468_sample_table.txt norm	GSM1051468_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42858/E-GEOD-42858.processed.1.zip	progesterone receptor null	17β-estradiol for 24 hours and then 17β-estradiol plus progesterone for 8 hrs
GSM1051467 1	PRKO_E+EP8h2 Gene expression data from progesterone receptor null mouse mammary glands after hormone treatment.	Mammary glands of 10-week-old progesterone receptor null mice treated with E+EP8h	Progesterone receptor null mice treated with E+EP8h, biological rep 2	10 weeks	progesterone receptor null	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	mammary gland	EFO	http://purl.obolibrary.org/obo/UBERON_0001911	female	EFO	EFO_0001265	BALB/c	EFO	EFO_0000602	P-GSE42858-2	ArrayExpress	P-GSE42858-3	ArrayExpress	P-GSE42858-4	ArrayExpress	GSM1051467 extract 1	total RNA	P-GSE42858-5	ArrayExpress	GSM1051467 LE 1	biotin	P-GSE42858-6	ArrayExpress	GSM1051467	A-AFFY-45	ArrayExpress	array assay	P-GSE42858-7	ArrayExpress	GSM1051467_Mouse_PRKO_E+EP8h2.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42858/E-GEOD-42858.raw.1.zip	P-GSE42858-1	ArrayExpress	GSM1051467_sample_table.txt norm	GSM1051467_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42858/E-GEOD-42858.processed.1.zip	progesterone receptor null	17β-estradiol for 24 hours and then 17β-estradiol plus progesterone for 8 hrs
GSM1051466 1	PRKO_E+EP8h1 Gene expression data from progesterone receptor null mouse mammary glands after hormone treatment.	Mammary glands of 10-week-old progesterone receptor null mice treated with E+EP8h	Progesterone receptor null mice treated with E+EP8h, biological rep 1	10 weeks	progesterone receptor null	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	mammary gland	EFO	http://purl.obolibrary.org/obo/UBERON_0001911	female	EFO	EFO_0001265	BALB/c	EFO	EFO_0000602	P-GSE42858-2	ArrayExpress	P-GSE42858-3	ArrayExpress	P-GSE42858-4	ArrayExpress	GSM1051466 extract 1	total RNA	P-GSE42858-5	ArrayExpress	GSM1051466 LE 1	biotin	P-GSE42858-6	ArrayExpress	GSM1051466	A-AFFY-45	ArrayExpress	array assay	P-GSE42858-7	ArrayExpress	GSM1051466_Mouse_PRKO_E+EP8h1.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42858/E-GEOD-42858.raw.1.zip	P-GSE42858-1	ArrayExpress	GSM1051466_sample_table.txt norm	GSM1051466_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42858/E-GEOD-42858.processed.1.zip	progesterone receptor null	17β-estradiol for 24 hours and then 17β-estradiol plus progesterone for 8 hrs
GSM1051465 1	WT_E+EP8h3 Gene expression data from wildtype mouse mammary glands after hormone treatment.	Mammary glands of 10-week-old wildtype mice treated with E+EP8h	Wildtype mice treated with E+EP8h, biological rep 3	10 weeks	wildtype	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	mammary gland	EFO	http://purl.obolibrary.org/obo/UBERON_0001911	female	EFO	EFO_0001265	BALB/c	EFO	EFO_0000602	P-GSE42858-2	ArrayExpress	P-GSE42858-3	ArrayExpress	P-GSE42858-4	ArrayExpress	GSM1051465 extract 1	total RNA	P-GSE42858-5	ArrayExpress	GSM1051465 LE 1	biotin	P-GSE42858-6	ArrayExpress	GSM1051465	A-AFFY-45	ArrayExpress	array assay	P-GSE42858-7	ArrayExpress	GSM1051465_Mouse_WT_E+EP8h3.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42858/E-GEOD-42858.raw.1.zip	P-GSE42858-1	ArrayExpress	GSM1051465_sample_table.txt norm	GSM1051465_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42858/E-GEOD-42858.processed.1.zip	wildtype	17β-estradiol for 24 hours and then 17β-estradiol plus progesterone for 8 hrs
GSM1051464 1	WT_E+EP8h2 Gene expression data from wildtype mouse mammary glands after hormone treatment.	Mammary glands of 10-week-old wildtype mice treated with E+EP8h	Wildtype mice treated with E+EP8h, biological rep 2	10 weeks	wildtype	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	mammary gland	EFO	http://purl.obolibrary.org/obo/UBERON_0001911	female	EFO	EFO_0001265	BALB/c	EFO	EFO_0000602	P-GSE42858-2	ArrayExpress	P-GSE42858-3	ArrayExpress	P-GSE42858-4	ArrayExpress	GSM1051464 extract 1	total RNA	P-GSE42858-5	ArrayExpress	GSM1051464 LE 1	biotin	P-GSE42858-6	ArrayExpress	GSM1051464	A-AFFY-45	ArrayExpress	array assay	P-GSE42858-7	ArrayExpress	GSM1051464_Mouse_WT_E+EP8h2.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42858/E-GEOD-42858.raw.1.zip	P-GSE42858-1	ArrayExpress	GSM1051464_sample_table.txt norm	GSM1051464_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42858/E-GEOD-42858.processed.1.zip	wildtype	17β-estradiol for 24 hours and then 17β-estradiol plus progesterone for 8 hrs
GSM1051463 1	WT_E+EP8h1 Gene expression data from wildtype mouse mammary glands after hormone treatment.	Mammary glands of 10-week-old wildtype mice treated with E+EP8h	Wildtype mice treated with E+EP8h, biological rep 1	10 weeks	wildtype	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	mammary gland	EFO	http://purl.obolibrary.org/obo/UBERON_0001911	female	EFO	EFO_0001265	BALB/c	EFO	EFO_0000602	P-GSE42858-2	ArrayExpress	P-GSE42858-3	ArrayExpress	P-GSE42858-4	ArrayExpress	GSM1051463 extract 1	total RNA	P-GSE42858-5	ArrayExpress	GSM1051463 LE 1	biotin	P-GSE42858-6	ArrayExpress	GSM1051463	A-AFFY-45	ArrayExpress	array assay	P-GSE42858-7	ArrayExpress	GSM1051463_Mouse_WT_E+EP8h1.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42858/E-GEOD-42858.raw.1.zip	P-GSE42858-1	ArrayExpress	GSM1051463_sample_table.txt norm	GSM1051463_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42858/E-GEOD-42858.processed.1.zip	wildtype	17β-estradiol for 24 hours and then 17β-estradiol plus progesterone for 8 hrs