Source Name Comment [Sample_description] Comment [Sample_source_name] Comment [Sample_title] Characteristics [organism] Term Source REF Term Accession Number Characteristics [strain or line] Protocol REF Term Source REF Extract Name Material Type Protocol REF Term Source REF Labeled Extract Name Label Protocol REF Term Source REF Assay Name Array Design REF Term Source REF Technology Type Protocol REF Term Source REF Array Data File Comment [ArrayExpress FTP file] Protocol REF Term Source REF Normalization Name Derived Array Data File Comment [Derived ArrayExpress FTP file] FactorValue [TREATMENT] GSM1032726 1 Technical replicate 2 of 2 ss HighFormate HighH2 MM901 formate-excess(380 mM sodium formate) H2-excess(110 mL/min) rep2 Methanococcus maripaludis S2 EFO http://purl.obolibrary.org/obo/NCBITaxon_267377 MM901 P-GSE42115-3 ArrayExpress GSM1032726 extract 1 total RNA P-GSE42115-4 ArrayExpress GSM1032726 LE 1 Cy3 P-GSE42115-5 ArrayExpress GSM1032726 A-GEOD-15063 ArrayExpress array assay P-GSE42115-6 ArrayExpress GSM1032726_252936410029_201109291159_S01_GE2_107_Sep09_2_3.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42115/E-GEOD-42115.raw.1.zip P-GSE42115-2 ArrayExpress GSM1032726_sample_table.txt norm GSM1032726_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42115/E-GEOD-42115.processed.1.zip formate-excess(380 mM sodium formate) H2-excess(110 mL/min) GSM1032726 2 Technical replicate 2 of 2 bulk from a mid-log phase culture(OD660=0.804) MM901 formate-excess(380 mM sodium formate) H2-excess(110 mL/min) rep2 Methanococcus maripaludis S2 EFO http://purl.obolibrary.org/obo/NCBITaxon_267377 MM901 P-GSE42115-3 ArrayExpress GSM1032726 extract 2 total RNA P-GSE42115-4 ArrayExpress GSM1032726 LE 2 Cy5 P-GSE42115-5 ArrayExpress GSM1032726 A-GEOD-15063 ArrayExpress array assay P-GSE42115-6 ArrayExpress GSM1032726_252936410029_201109291159_S01_GE2_107_Sep09_2_3.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42115/E-GEOD-42115.raw.1.zip P-GSE42115-2 ArrayExpress GSM1032726_sample_table.txt norm GSM1032726_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42115/E-GEOD-42115.processed.1.zip none GSM1032725 1 Technical replicate 1 of 2 bulk from a mid-log phase culture(OD660=0.804) MM901 formate-excess(380 mM sodium formate) H2-excess(110 mL/min) rep1 Methanococcus maripaludis S2 EFO http://purl.obolibrary.org/obo/NCBITaxon_267377 MM901 P-GSE42115-3 ArrayExpress GSM1032725 extract 1 total RNA P-GSE42115-4 ArrayExpress GSM1032725 LE 1 Cy3 P-GSE42115-5 ArrayExpress GSM1032725 A-GEOD-15063 ArrayExpress array assay P-GSE42115-6 ArrayExpress GSM1032725_252936410029_201109291159_S01_GE2_107_Sep09_1_3.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42115/E-GEOD-42115.raw.1.zip P-GSE42115-1 ArrayExpress GSM1032725_sample_table.txt norm GSM1032725_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42115/E-GEOD-42115.processed.1.zip none GSM1032725 2 Technical replicate 1 of 2 ss HighFormate HighH2 MM901 formate-excess(380 mM sodium formate) H2-excess(110 mL/min) rep1 Methanococcus maripaludis S2 EFO http://purl.obolibrary.org/obo/NCBITaxon_267377 MM901 P-GSE42115-3 ArrayExpress GSM1032725 extract 2 total RNA P-GSE42115-4 ArrayExpress GSM1032725 LE 2 Cy5 P-GSE42115-5 ArrayExpress GSM1032725 A-GEOD-15063 ArrayExpress array assay P-GSE42115-6 ArrayExpress GSM1032725_252936410029_201109291159_S01_GE2_107_Sep09_1_3.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42115/E-GEOD-42115.raw.1.zip P-GSE42115-1 ArrayExpress GSM1032725_sample_table.txt norm GSM1032725_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42115/E-GEOD-42115.processed.1.zip formate-excess(380 mM sodium formate) H2-excess(110 mL/min) GSM1032724 2 Technical replicate 2 of 2 bulk from a mid-log phase culture(OD660=0.804) MM901 formate-excess(380 mM sodium formate) H2-limiting(21 mL/min) rep2 Methanococcus maripaludis S2 EFO http://purl.obolibrary.org/obo/NCBITaxon_267377 MM901 P-GSE42115-3 ArrayExpress GSM1032724 extract 2 total RNA P-GSE42115-4 ArrayExpress GSM1032724 LE 2 Cy5 P-GSE42115-5 ArrayExpress GSM1032724 A-GEOD-15063 ArrayExpress array assay P-GSE42115-6 ArrayExpress GSM1032724_252936410029_201109291159_S01_GE2_107_Sep09_2_4.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42115/E-GEOD-42115.raw.1.zip P-GSE42115-2 ArrayExpress GSM1032724_sample_table.txt norm GSM1032724_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42115/E-GEOD-42115.processed.1.zip none GSM1032724 1 Technical replicate 2 of 2 ss HighFormate LowH2 MM901 formate-excess(380 mM sodium formate) H2-limiting(21 mL/min) rep2 Methanococcus maripaludis S2 EFO http://purl.obolibrary.org/obo/NCBITaxon_267377 MM901 P-GSE42115-3 ArrayExpress GSM1032724 extract 1 total RNA P-GSE42115-4 ArrayExpress GSM1032724 LE 1 Cy3 P-GSE42115-5 ArrayExpress GSM1032724 A-GEOD-15063 ArrayExpress array assay P-GSE42115-6 ArrayExpress GSM1032724_252936410029_201109291159_S01_GE2_107_Sep09_2_4.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42115/E-GEOD-42115.raw.1.zip P-GSE42115-2 ArrayExpress GSM1032724_sample_table.txt norm GSM1032724_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42115/E-GEOD-42115.processed.1.zip formate-excess(380 mM sodium formate) H2-limiting(21 mL/min) GSM1032723 1 Technical replicate 1 of 2 bulk from a mid-log phase culture(OD660=0.804) MM901 formate-excess(380 mM sodium formate) H2-limiting(21 mL/min) rep1 Methanococcus maripaludis S2 EFO http://purl.obolibrary.org/obo/NCBITaxon_267377 MM901 P-GSE42115-3 ArrayExpress GSM1032723 extract 1 total RNA P-GSE42115-4 ArrayExpress GSM1032723 LE 1 Cy3 P-GSE42115-5 ArrayExpress GSM1032723 A-GEOD-15063 ArrayExpress array assay P-GSE42115-6 ArrayExpress GSM1032723_252936410029_201109291159_S01_GE2_107_Sep09_1_4.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42115/E-GEOD-42115.raw.1.zip P-GSE42115-1 ArrayExpress GSM1032723_sample_table.txt norm GSM1032723_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42115/E-GEOD-42115.processed.1.zip none GSM1032723 2 Technical replicate 1 of 2 ss HighFormate LowH2 MM901 formate-excess(380 mM sodium formate) H2-limiting(21 mL/min) rep1 Methanococcus maripaludis S2 EFO http://purl.obolibrary.org/obo/NCBITaxon_267377 MM901 P-GSE42115-3 ArrayExpress GSM1032723 extract 2 total RNA P-GSE42115-4 ArrayExpress GSM1032723 LE 2 Cy5 P-GSE42115-5 ArrayExpress GSM1032723 A-GEOD-15063 ArrayExpress array assay P-GSE42115-6 ArrayExpress GSM1032723_252936410029_201109291159_S01_GE2_107_Sep09_1_4.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42115/E-GEOD-42115.raw.1.zip P-GSE42115-1 ArrayExpress GSM1032723_sample_table.txt norm GSM1032723_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42115/E-GEOD-42115.processed.1.zip formate-excess(380 mM sodium formate) H2-limiting(21 mL/min)