Source Name Comment [Sample_description] Comment [Sample_source_name] Comment [Sample_title] Characteristics [age] Characteristics [estrogen receptor] Characteristics [her2] Characteristics [node positivity] Characteristics [organism] Term Source REF Term Accession Number Characteristics [organism part] Characteristics [tumour content] Protocol REF Term Source REF Protocol REF Term Source REF Extract Name Material Type Protocol REF Term Source REF Labeled Extract Name Label Protocol REF Term Source REF Assay Name Array Design REF Term Source REF Technology Type Protocol REF Term Source REF Array Data File Comment [ArrayExpress FTP file] Protocol REF Term Source REF Normalization Name Derived Array Data File Comment [Derived ArrayExpress FTP file] FactorValue [AGE] FactorValue [ESTROGEN RECEPTOR] FactorValue [HER2] FactorValue [NODE POSITIVITY] FactorValue [ORGANISM PART] FactorValue [TUMOUR CONTENT] GSM1032051 1 p-33-adjacent normal Fresh frozen tumour 83139995N-rep1 37 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Adjacent normal tissue 0% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032051 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032051 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032051 A-GEOD-16249 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032051_83139995N.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032051_sample_table.txt norm GSM1032051_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 37 not specified not specified not specified Adjacent normal tissue 0% GSM1032050 1 p-32-adjacent normal Fresh frozen tumour 76865148N_Gland-rep1 36 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Adjacent normal tissue 0% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032050 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032050 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032050 A-GEOD-16249 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032050_76865148N_Gland.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032050_sample_table.txt norm GSM1032050_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 36 not specified not specified not specified Adjacent normal tissue 0% GSM1032049 1 p-31-adjacent normal Fresh frozen tumour 47892333N-rep1 81 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Adjacent normal tissue 0% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032049 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032049 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032049 A-GEOD-16249 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032049_47892333N.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032049_sample_table.txt norm GSM1032049_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 81 not specified not specified not specified Adjacent normal tissue 0% GSM1032048 1 p-30-adjacent normal Fresh frozen tumour 36834119N-rep1 42 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Adjacent normal tissue 0% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032048 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032048 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032048 A-GEOD-16249 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032048_36834119N.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032048_sample_table.txt norm GSM1032048_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 42 not specified not specified not specified Adjacent normal tissue 0% GSM1032047 1 p-29-adjacent normal Fresh frozen tumour 33181622N_DCIS-rep1 49 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Adjacent normal tissue 0% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032047 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032047 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032047 A-GEOD-16249 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032047_33181622N_DCIS.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032047_sample_table.txt norm GSM1032047_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 49 not specified not specified not specified Adjacent normal tissue 0% GSM1032046 1 p-28-adjacent normal Fresh frozen tumour 20021037N-rep1 49 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Adjacent normal tissue 0% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032046 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032046 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032046 A-GEOD-16249 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032046_20021037N.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032046_sample_table.txt norm GSM1032046_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 49 not specified not specified not specified Adjacent normal tissue 0% GSM1032045 1 p-27-adjacent normal Fresh frozen tumour 20020912N_Gland-rep1 65 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Adjacent normal tissue 0% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032045 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032045 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032045 A-GEOD-16249 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032045_20020912N_Gland.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032045_sample_table.txt norm GSM1032045_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 65 not specified not specified not specified Adjacent normal tissue 0% GSM1032044 1 p-25-adjacent normal Fresh frozen tumour 2001020N_A-rep1 71 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Adjacent normal tissue 0% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032044 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032044 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032044 A-GEOD-15018 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032044_25N_A.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032044_sample_table.txt norm GSM1032044_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 71 not specified not specified not specified Adjacent normal tissue 0% GSM1032043 1 p-24-adjacent normal Fresh frozen tumour 20020386N_A-rep1 50 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Adjacent normal tissue 0% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032043 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032043 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032043 A-GEOD-15018 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032043_24N_A.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032043_sample_table.txt norm GSM1032043_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 50 not specified not specified not specified Adjacent normal tissue 0% GSM1032042 1 p-22-adjacent normal Fresh frozen tumour 2001066N_B-rep1 43 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Adjacent normal tissue 0% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032042 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032042 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032042 A-GEOD-15018 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032042_22N_B.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032042_sample_table.txt norm GSM1032042_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 43 not specified not specified not specified Adjacent normal tissue 0% GSM1032041 1 p-21-adjacent normal_B Fresh frozen tumour 2001043N_B-rep1 39 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Adjacent normal tissue 0% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032041 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032041 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032041 A-GEOD-15018 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032041_21N_B.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032041_sample_table.txt norm GSM1032041_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 39 not specified not specified not specified Adjacent normal tissue 0% GSM1032040 1 p-21-adjacent normal_A Fresh frozen tumour 2001043N_A-rep1 39 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Adjacent normal tissue 0% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032040 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032040 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032040 A-GEOD-15018 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032040_21N_A.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032040_sample_table.txt norm GSM1032040_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 39 not specified not specified not specified Adjacent normal tissue 0% GSM1032039 1 p-20-adjacent normal_B Fresh frozen tumour 2000976N_B-rep1 47 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Adjacent normal tissue 0% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032039 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032039 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032039 A-GEOD-15018 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032039_20N_B.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032039_sample_table.txt norm GSM1032039_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 47 not specified not specified not specified Adjacent normal tissue 0% GSM1032038 1 p-20-adjacent normal_A Fresh frozen tumour 2000976N_A-rep1 47 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Adjacent normal tissue 0% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032038 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032038 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032038 A-GEOD-15018 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032038_20N_A.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032038_sample_table.txt norm GSM1032038_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 47 not specified not specified not specified Adjacent normal tissue 0% GSM1032037 1 p-19-adjacent normal Fresh frozen tumour 6022668N-rep1 58 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Adjacent normal tissue 0% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032037 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032037 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032037 A-GEOD-15018 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032037_19N.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032037_sample_table.txt norm GSM1032037_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 58 not specified not specified not specified Adjacent normal tissue 0% GSM1032036 1 p-18-adjacent normal Fresh frozen tumour 17880386N-rep1 38 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Adjacent normal tissue 0% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032036 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032036 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032036 A-GEOD-15018 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032036_18N.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032036_sample_table.txt norm GSM1032036_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 38 not specified not specified not specified Adjacent normal tissue 0% GSM1032035 1 p-17-adjacent normal Fresh frozen tumour 50877113N-rep1 48 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Adjacent normal tissue 0% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032035 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032035 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032035 A-GEOD-15018 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032035_17N.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032035_sample_table.txt norm GSM1032035_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 48 not specified not specified not specified Adjacent normal tissue 0% GSM1032034 1 p-16-adjacent normal Fresh frozen tumour 12196182N-rep1 46 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Adjacent normal tissue 0% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032034 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032034 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032034 A-GEOD-15018 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032034_16N.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032034_sample_table.txt norm GSM1032034_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 46 not specified not specified not specified Adjacent normal tissue 0% GSM1032033 1 p-15-adjacent normal Fresh frozen tumour 84960009N-rep1 41 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Adjacent normal tissue 0% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032033 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032033 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032033 A-GEOD-15018 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032033_15N.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032033_sample_table.txt norm GSM1032033_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 41 not specified not specified not specified Adjacent normal tissue 0% GSM1032032 1 p-14-adjacent normal_2 Fresh frozen tumour 80774320N-rep2 28 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Adjacent normal tissue 0% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032032 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032032 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032032 A-GEOD-15018 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032032_14N_10480.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032032_sample_table.txt norm GSM1032032_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 28 not specified not specified not specified Adjacent normal tissue 0% GSM1032031 1 p-14-adjacent normal_1 Fresh frozen tumour 80774320N-rep1 28 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Adjacent normal tissue 0% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032031 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032031 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032031 A-GEOD-15018 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032031_14N_10477.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032031_sample_table.txt norm GSM1032031_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 28 not specified not specified not specified Adjacent normal tissue 0% GSM1032030 1 p-13-adjacent normal Fresh frozen tumour 53507043N-rep1 44 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Adjacent normal tissue 0% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032030 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032030 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032030 A-GEOD-15018 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032030_13N.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032030_sample_table.txt norm GSM1032030_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 44 not specified not specified not specified Adjacent normal tissue 0% GSM1032029 1 p-12-adjacent normal_B Fresh frozen tumour 72986324N_B-rep1 37 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Adjacent normal tissue 0% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032029 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032029 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032029 A-GEOD-15018 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032029_12N_B.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032029_sample_table.txt norm GSM1032029_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 37 not specified not specified not specified Adjacent normal tissue 0% GSM1032028 1 p-12-adjacent normal_A Fresh frozen tumour 72986324N_A-rep1 37 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Adjacent normal tissue 0% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032028 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032028 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032028 A-GEOD-15018 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032028_12N_A.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032028_sample_table.txt norm GSM1032028_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 37 not specified not specified not specified Adjacent normal tissue 0% GSM1032027 1 p-9-adjacent normal Fresh frozen tumour 20020907N_replen-rep1 68 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Adjacent normal tissue 0% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032027 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032027 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032027 A-GEOD-15018 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032027_9N_replen.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032027_sample_table.txt norm GSM1032027_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 68 not specified not specified not specified Adjacent normal tissue 0% GSM1032026 1 p-8-adjacent normal Fresh frozen tumour 2000695N_B-rep1 59 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Adjacent normal tissue 0% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032026 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032026 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032026 A-GEOD-15018 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032026_8N_B.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032026_sample_table.txt norm GSM1032026_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 59 not specified not specified not specified Adjacent normal tissue 0% GSM1032025 1 p-7-adjacent normal Fresh frozen tumour 2000653N_replen-rep1 47 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Adjacent normal tissue 0% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032025 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032025 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032025 A-GEOD-15018 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032025_7N_replen.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032025_sample_table.txt norm GSM1032025_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 47 not specified not specified not specified Adjacent normal tissue 0% GSM1032024 1 p-33-tumour Fresh frozen tumour 83139995T-rep1 37 - - + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Breast tumour 90% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032024 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032024 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032024 A-GEOD-16249 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032024_83139995T.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032024_sample_table.txt norm GSM1032024_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 37 - - + Breast tumour 90% GSM1032023 1 p-32-tumour Fresh frozen tumour 76865148T-rep1 36 + + + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Breast tumour 80% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032023 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032023 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032023 A-GEOD-16249 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032023_76865148T.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032023_sample_table.txt norm GSM1032023_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 36 + + + Breast tumour 80% GSM1032022 1 p-31-tumour Fresh frozen tumour 47892333T-rep1 81 + + - Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Breast tumour 70% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032022 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032022 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032022 A-GEOD-16249 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032022_47892333T.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032022_sample_table.txt norm GSM1032022_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 81 + + - Breast tumour 70% GSM1032021 1 p-30-tumour Fresh frozen tumour 36834119T-rep1 42 + + - Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Breast tumour 60% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032021 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032021 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032021 A-GEOD-16249 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032021_36834119T.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032021_sample_table.txt norm GSM1032021_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 42 + + - Breast tumour 60% GSM1032020 1 p-29-tumour Fresh frozen tumour 33181622T-rep1 49 + - + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Breast tumour 65% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032020 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032020 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032020 A-GEOD-16249 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032020_33181622T.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032020_sample_table.txt norm GSM1032020_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 49 + - + Breast tumour 65% GSM1032019 1 p-28-tumour Fresh frozen tumour 20021037T-rep1 49 + + + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Breast tumour 40% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032019 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032019 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032019 A-GEOD-16249 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032019_20021037T.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032019_sample_table.txt norm GSM1032019_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 49 + + + Breast tumour 40% GSM1032018 1 p-27-tumour Fresh frozen tumour 20020912T-rep1 65 - - - Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Breast tumour 90% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032018 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032018 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032018 A-GEOD-16249 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032018_20020912T.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032018_sample_table.txt norm GSM1032018_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 65 - - - Breast tumour 90% GSM1032017 1 p-26-tumour Fresh frozen tumour 40215061T-rep1 65 + + + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Breast tumour 60% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032017 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032017 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032017 A-GEOD-15018 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032017_26T.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032017_sample_table.txt norm GSM1032017_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 65 + + + Breast tumour 60% GSM1032016 1 p-25-tumour Fresh frozen tumour 2001020T-rep1 71 + - + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Breast tumour 70% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032016 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032016 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032016 A-GEOD-15018 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032016_25T.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032016_sample_table.txt norm GSM1032016_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 71 + - + Breast tumour 70% GSM1032015 1 p-24-tumour Fresh frozen tumour 20020386T-rep1 50 + + + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Breast tumour 80% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032015 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032015 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032015 A-GEOD-15018 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032015_24T.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032015_sample_table.txt norm GSM1032015_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 50 + + + Breast tumour 80% GSM1032014 1 p-23-tumour_2 Fresh frozen tumour 2001237T-rep2 79 - na - Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Breast tumour 90% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032014 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032014 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032014 A-GEOD-15018 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032014_23T_10480.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032014_sample_table.txt norm GSM1032014_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 79 - na - Breast tumour 90% GSM1032013 1 p-23-tumour_1 Fresh frozen tumour 2001237T-rep1 79 - na - Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Breast tumour 90% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032013 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032013 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032013 A-GEOD-15018 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032013_23T_10476.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032013_sample_table.txt norm GSM1032013_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 79 - na - Breast tumour 90% GSM1032012 1 p-22-tumour Fresh frozen tumour 2001066T-rep1 43 + + + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Breast tumour 80% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032012 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032012 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032012 A-GEOD-15018 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032012_22T.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032012_sample_table.txt norm GSM1032012_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 43 + + + Breast tumour 80% GSM1032011 1 p-21-tumour Fresh frozen tumour 2001043T-rep1 39 + + - Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Breast tumour 80% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032011 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032011 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032011 A-GEOD-15018 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032011_21T.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032011_sample_table.txt norm GSM1032011_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 39 + + - Breast tumour 80% GSM1032010 1 p-20-tumour Fresh frozen tumour 2000976T-rep1 47 + - + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Breast tumour 70% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032010 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032010 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032010 A-GEOD-15018 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032010_20T.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032010_sample_table.txt norm GSM1032010_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 47 + - + Breast tumour 70% GSM1032009 1 p-19-tumour Fresh frozen tumour 6022668T-rep1 58 - + + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Breast tumour 70% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032009 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032009 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032009 A-GEOD-15018 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032009_19T.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032009_sample_table.txt norm GSM1032009_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 58 - + + Breast tumour 70% GSM1032008 1 p-18-tumour_2 Fresh frozen tumour 17880386T-rep2 38 - + + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Breast tumour 60% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032008 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032008 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032008 A-GEOD-15018 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032008_18T_10480.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032008_sample_table.txt norm GSM1032008_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 38 - + + Breast tumour 60% GSM1032007 1 p-18-tumour_1 Fresh frozen tumour 17880386T-rep1 38 - + + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Breast tumour 60% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032007 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032007 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032007 A-GEOD-15018 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032007_18T_10476.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032007_sample_table.txt norm GSM1032007_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 38 - + + Breast tumour 60% GSM1032006 1 p-17-tumour Fresh frozen tumour 50877113T-rep1 48 + + + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Breast tumour 85% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032006 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032006 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032006 A-GEOD-15018 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032006_17T.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032006_sample_table.txt norm GSM1032006_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 48 + + + Breast tumour 85% GSM1032005 1 p-16-tumour Fresh frozen tumour 12196182T-rep1 46 - + + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Breast tumour 80% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032005 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032005 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032005 A-GEOD-15018 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032005_16T.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032005_sample_table.txt norm GSM1032005_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 46 - + + Breast tumour 80% GSM1032004 1 p-15-tumour Fresh frozen tumour 84960009T-rep1 41 + - + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Breast tumour 70% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032004 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032004 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032004 A-GEOD-15018 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032004_15T.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032004_sample_table.txt norm GSM1032004_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 41 + - + Breast tumour 70% GSM1032003 1 p-14-tumour_2 Fresh frozen tumour 80774320T-rep2 28 + - + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Breast tumour 60% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032003 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032003 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032003 A-GEOD-15018 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032003_14T_10480.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032003_sample_table.txt norm GSM1032003_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 28 + - + Breast tumour 60% GSM1032002 1 p-14-tumour_1 Fresh frozen tumour 80774320T-rep1 28 + - + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Breast tumour 60% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032002 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032002 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032002 A-GEOD-15018 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032002_14T_10475.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032002_sample_table.txt norm GSM1032002_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 28 + - + Breast tumour 60% GSM1032001 1 p-13-tumour Fresh frozen tumour 53507043T-rep1 44 + - + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Breast tumour 80% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032001 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032001 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032001 A-GEOD-15018 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032001_13T.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032001_sample_table.txt norm GSM1032001_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 44 + - + Breast tumour 80% GSM1032000 1 p-12-tumour Fresh frozen tumour 72986324T_A-rep1 37 + + - Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Breast tumour 80% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1032000 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1032000 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1032000 A-GEOD-15018 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1032000_12T_A.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1032000_sample_table.txt norm GSM1032000_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 37 + + - Breast tumour 80% GSM1031999 1 p-11-tumour Fresh frozen tumour 32934758T-rep1 43 + - - Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Breast tumour 90% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1031999 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1031999 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1031999 A-GEOD-15018 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1031999_11T.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1031999_sample_table.txt norm GSM1031999_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 43 + - - Breast tumour 90% GSM1031998 1 p-10-tumour Fresh frozen tumour 33978451T-rep1 36 - + - Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Breast tumour 95% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1031998 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1031998 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1031998 A-GEOD-15018 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1031998_10T.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1031998_sample_table.txt norm GSM1031998_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 36 - + - Breast tumour 95% GSM1031997 1 p-9-tumour Fresh frozen tumour 20020907T_(2)-rep1 68 + - - Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Breast tumour 60% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1031997 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1031997 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1031997 A-GEOD-15018 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1031997_9T_2_.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1031997_sample_table.txt norm GSM1031997_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 68 + - - Breast tumour 60% GSM1031996 1 p-8-tumour Fresh frozen tumour 2000695T-rep1 59 - na + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Breast tumour 60% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1031996 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1031996 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1031996 A-GEOD-15018 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1031996_8T.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1031996_sample_table.txt norm GSM1031996_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 59 - na + Breast tumour 60% GSM1031995 1 p-7-tumour_B Fresh frozen tumour 2000653T_B-rep1 47 + - - Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Breast tumour 5% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1031995 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1031995 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1031995 A-GEOD-15018 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1031995_7T_B.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1031995_sample_table.txt norm GSM1031995_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 47 + - - Breast tumour 5% GSM1031994 1 p-7-tumour_A Fresh frozen tumour 2000653T_A-rep1 47 + - - Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Breast tumour 30% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1031994 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1031994 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1031994 A-GEOD-15018 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1031994_7T_A.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1031994_sample_table.txt norm GSM1031994_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 47 + - - Breast tumour 30% GSM1031993 1 p-5-tumour Fresh frozen tumour 990130T-rep1 41 + na + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Breast tumour 70% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1031993 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1031993 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1031993 A-GEOD-15018 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1031993_5T.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1031993_sample_table.txt norm GSM1031993_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 41 + na + Breast tumour 70% GSM1031992 1 p-3-tumour Fresh frozen tumour 980090T-rep1 48 - na + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Breast tumour 80% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1031992 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1031992 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1031992 A-GEOD-15018 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1031992_3T.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.1.zip P-GSE42072-1 ArrayExpress GSM1031992_sample_table.txt norm GSM1031992_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 48 - na + Breast tumour 80% GSM1031991 1 p-2-tumour Fresh frozen tumour 980085T-rep1 54 + na - Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Breast tumour 60% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1031991 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1031991 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1031991 A-GEOD-15018 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1031991_2T.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.2.zip P-GSE42072-1 ArrayExpress GSM1031991_sample_table.txt norm GSM1031991_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 54 + na - Breast tumour 60% GSM1031990 1 p-1-tumour Fresh frozen tumour 980081T-rep1 69 + na + Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 Breast tumour 60% P-GSE42072-2 ArrayExpress P-GSE42072-3 ArrayExpress GSM1031990 extract 1 total RNA P-GSE42072-4 ArrayExpress GSM1031990 LE 1 Cy3 P-GSE42072-5 ArrayExpress GSM1031990 A-GEOD-15018 ArrayExpress array assay P-GSE42072-6 ArrayExpress GSM1031990_1T.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.raw.2.zip P-GSE42072-1 ArrayExpress GSM1031990_sample_table.txt norm GSM1031990_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42072/E-GEOD-42072.processed.1.zip 69 + na + Breast tumour 60%