Source Name Comment [Sample_characteristics] Comment [Sample_description] Comment [Sample_source_name] Comment [Sample_title] Characteristics [Organism] Term Source REF Term Accession Number Characteristics [cell type] Term Source REF Term Accession Number Characteristics [chip antibody] Characteristics [knockdown] Characteristics [qualscores] Characteristics [rna enrichment protocol] Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Extract Name Comment [INSTRUMENT_MODEL] Comment [LIBRARY_SELECTION] Comment [LIBRARY_SOURCE] Comment [LIBRARY_STRATEGY] Material Type Assay Name Comment [ENA_EXPERIMENT] Comment [Platform_title] Technology Type Protocol REF Term Source REF Scan Name Comment [ENA_RUN] Comment [FASTQ_URI] FactorValue [CELL TYPE] Term Source REF Term Accession Number FactorValue [CHIP ANTIBODY] FactorValue [KNOCKDOWN] FactorValue [QUALSCORES] FactorValue [RNA ENRICHMENT PROTOCOL] GSM1055211 1 post-trizol RiboMinus_rRNA depleted RNA sample processed data rrp6-s3-ribominus.csv S3 cells rrp6_s3_ribominus_bio-rep3 [RNA-Seq] Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 S3 Rrp6 phred33 RiboMinus Eukaryote Kit for RNA-Seq (Invitrogen) P-GSE41950-2 ArrayExpress P-GSE41950-5 ArrayExpress P-GSE41950-6 ArrayExpress GSM1055211 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1055211 SRX212026 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE41950-7 ArrayExpress SRR638075 SRR638075 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR638/SRR638075/SRR638075.fastq.gz S3 not specified Rrp6 phred33 RiboMinus Eukaryote Kit for RNA-Seq (Invitrogen) GSM1055210 1 post-trizol RiboMinus_rRNA depleted RNA sample processed data rrp6-s3-ribominus.csv S3 cells rrp6_s3_ribominus_bio-rep2_tech-rep2 [RNA-Seq] Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 S3 Rrp6 phred33 RiboMinus Eukaryote Kit for RNA-Seq (Invitrogen) P-GSE41950-2 ArrayExpress P-GSE41950-5 ArrayExpress P-GSE41950-6 ArrayExpress GSM1055210 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1055210 SRX212025 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE41950-7 ArrayExpress SRR638074 SRR638074 S3 not specified Rrp6 phred33 RiboMinus Eukaryote Kit for RNA-Seq (Invitrogen) GSM1055209 1 post-trizol RiboMinus_rRNA depleted RNA sample processed data rrp6-s3-ribominus.csv S3 cells rrp6_s3_ribominus_bio-rep2_tech-rep1 [RNA-Seq] Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 S3 Rrp6 phred64 RiboMinus Eukaryote Kit for RNA-Seq (Invitrogen) P-GSE41950-2 ArrayExpress P-GSE41950-5 ArrayExpress P-GSE41950-6 ArrayExpress GSM1055209 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1055209 SRX212024 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE41950-7 ArrayExpress SRR638073 SRR638073 S3 not specified Rrp6 phred64 RiboMinus Eukaryote Kit for RNA-Seq (Invitrogen) GSM1055208 1 post-trizol Poly(A)+ RNA sample processed data rrp6-s3-polyA.csv S3 cells rrp6_s3_polya_bio-rep3 [RNA-Seq] Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 S3 Rrp6 phred33 Poly(A)Purist MAG or MicroPoly(A)Purist Kit (Ambion) P-GSE41950-2 ArrayExpress P-GSE41950-5 ArrayExpress P-GSE41950-6 ArrayExpress GSM1055208 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1055208 SRX212023 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE41950-7 ArrayExpress SRR638072 SRR638072 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR638/SRR638072/SRR638072.fastq.gz S3 not specified Rrp6 phred33 Poly(A)Purist MAG or MicroPoly(A)Purist Kit (Ambion) GSM1055207 1 post-trizol Poly(A)+ RNA sample processed data rrp6-s3-polyA.csv S3 cells rrp6_s3_polya_bio-rep1 [RNA-Seq] Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 S3 Rrp6 phred64 Poly(A)Purist MAG or MicroPoly(A)Purist Kit (Ambion) P-GSE41950-2 ArrayExpress P-GSE41950-5 ArrayExpress P-GSE41950-6 ArrayExpress GSM1055207 extract 1 Illumina Genome Analyzer II cDNA transcriptomic RNA-Seq total RNA GSM1055207 SRX212022 Illumina Genome Analyzer II (Drosophila melanogaster) sequencing assay P-GSE41950-7 ArrayExpress SRR638071 SRR638071 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR638/SRR638071/SRR638071.fastq.gz S3 not specified Rrp6 phred64 Poly(A)Purist MAG or MicroPoly(A)Purist Kit (Ambion) GSM1055206 1 post-trizol RiboMinus_rRNA depleted RNA sample processed data rrp6-s2-ribominus.csv S2 cells rrp6_s2_ribominus_bio-rep3 [RNA-Seq] Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 S2 EFO EFO_0001233 Rrp6 phred33 RiboMinus Eukaryote Kit for RNA-Seq (Invitrogen) P-GSE41950-2 ArrayExpress P-GSE41950-5 ArrayExpress P-GSE41950-6 ArrayExpress GSM1055206 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1055206 SRX212021 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE41950-7 ArrayExpress SRR638070 SRR638070 S2 EFO EFO_0001233 not specified Rrp6 phred33 RiboMinus Eukaryote Kit for RNA-Seq (Invitrogen) GSM1055205 1 post-trizol Poly(A)+ RNA sample processed data rrp6-s2-polyA.csv S2 cells rrp6_s2_polya_bio-rep3 [RNA-Seq] Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 S2 EFO EFO_0001233 Rrp6 phred33 Poly(A)Purist MAG or MicroPoly(A)Purist Kit (Ambion) P-GSE41950-2 ArrayExpress P-GSE41950-5 ArrayExpress P-GSE41950-6 ArrayExpress GSM1055205 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1055205 SRX212020 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE41950-7 ArrayExpress SRR638069 SRR638069 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR638/SRR638069/SRR638069.fastq.gz S2 EFO EFO_0001233 not specified Rrp6 phred33 Poly(A)Purist MAG or MicroPoly(A)Purist Kit (Ambion) GSM1055204 1 post-trizol Poly(A)+ RNA sample processed data rrp6-s2-polyA.csv S2 cells rrp6_s2_polya_bio-rep1 [RNA-Seq] Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 S2 EFO EFO_0001233 Rrp6 phred64 Poly(A)Purist MAG or MicroPoly(A)Purist Kit (Ambion) P-GSE41950-2 ArrayExpress P-GSE41950-5 ArrayExpress P-GSE41950-6 ArrayExpress GSM1055204 extract 1 Illumina Genome Analyzer II cDNA transcriptomic RNA-Seq total RNA GSM1055204 SRX212019 Illumina Genome Analyzer II (Drosophila melanogaster) sequencing assay P-GSE41950-7 ArrayExpress SRR638068 SRR638068 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR638/SRR638068/SRR638068.fastq.gz S2 EFO EFO_0001233 not specified Rrp6 phred64 Poly(A)Purist MAG or MicroPoly(A)Purist Kit (Ambion) GSM1055203 1 post-trizol RiboMinus_rRNA depleted RNA sample processed data rrp40-s3-ribominus.csv S3 cells rrp40_s3_ribominus_bio-rep3 [RNA-Seq] Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 S3 Rrp40 phred33 RiboMinus Eukaryote Kit for RNA-Seq (Invitrogen) P-GSE41950-2 ArrayExpress P-GSE41950-5 ArrayExpress P-GSE41950-6 ArrayExpress GSM1055203 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1055203 SRX212018 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE41950-7 ArrayExpress SRR638067 SRR638067 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR638/SRR638067/SRR638067.fastq.gz S3 not specified Rrp40 phred33 RiboMinus Eukaryote Kit for RNA-Seq (Invitrogen) GSM1055202 1 post-trizol RiboMinus_rRNA depleted RNA sample processed data rrp40-s3-ribominus.csv S3 cells rrp40_s3_ribominus_bio-rep2_tech-rep2 [RNA-Seq] Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 S3 Rrp40 phred33 RiboMinus Eukaryote Kit for RNA-Seq (Invitrogen) P-GSE41950-2 ArrayExpress P-GSE41950-5 ArrayExpress P-GSE41950-6 ArrayExpress GSM1055202 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1055202 SRX212017 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE41950-7 ArrayExpress SRR638066 SRR638066 S3 not specified Rrp40 phred33 RiboMinus Eukaryote Kit for RNA-Seq (Invitrogen) GSM1055201 1 post-trizol RiboMinus_rRNA depleted RNA sample processed data rrp40-s3-ribominus.csv S3 cells rrp40_s3_ribominus_bio-rep2_tech-rep1 [RNA-Seq] Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 S3 Rrp40 phred64 RiboMinus Eukaryote Kit for RNA-Seq (Invitrogen) P-GSE41950-2 ArrayExpress P-GSE41950-5 ArrayExpress P-GSE41950-6 ArrayExpress GSM1055201 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1055201 SRX212016 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE41950-7 ArrayExpress SRR638065 SRR638065 S3 not specified Rrp40 phred64 RiboMinus Eukaryote Kit for RNA-Seq (Invitrogen) GSM1055200 1 post-trizol Poly(A)+ RNA sample processed data rrp40-s3-polyA.csv S3 cells rrp40_s3_polya_bio-rep3 [RNA-Seq] Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 S3 Rrp40 phred33 Poly(A)Purist MAG or MicroPoly(A)Purist Kit (Ambion) P-GSE41950-2 ArrayExpress P-GSE41950-5 ArrayExpress P-GSE41950-6 ArrayExpress GSM1055200 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1055200 SRX212015 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE41950-7 ArrayExpress SRR638064 SRR638064 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR638/SRR638064/SRR638064.fastq.gz S3 not specified Rrp40 phred33 Poly(A)Purist MAG or MicroPoly(A)Purist Kit (Ambion) GSM1055199 1 post-trizol Poly(A)+ RNA sample processed data rrp40-s3-polyA.csv S3 cells rrp40_s3_polya_bio-rep2_tech-rep2 [RNA-Seq] Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 S3 Rrp40 phred33 Poly(A)Purist MAG or MicroPoly(A)Purist Kit (Ambion) P-GSE41950-2 ArrayExpress P-GSE41950-5 ArrayExpress P-GSE41950-6 ArrayExpress GSM1055199 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1055199 SRX212014 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE41950-7 ArrayExpress SRR638063 SRR638063 S3 not specified Rrp40 phred33 Poly(A)Purist MAG or MicroPoly(A)Purist Kit (Ambion) GSM1055198 1 post-trizol Poly(A)+ RNA sample processed data rrp40-s3-polyA.csv S3 cells rrp40_s3_polya_bio-rep2_tech-rep1 [RNA-Seq] Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 S3 Rrp40 phred64 Poly(A)Purist MAG or MicroPoly(A)Purist Kit (Ambion) P-GSE41950-2 ArrayExpress P-GSE41950-5 ArrayExpress P-GSE41950-6 ArrayExpress GSM1055198 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1055198 SRX212013 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE41950-7 ArrayExpress SRR638062 SRR638062 S3 not specified Rrp40 phred64 Poly(A)Purist MAG or MicroPoly(A)Purist Kit (Ambion) GSM1055197 1 post-trizol RiboMinus_rRNA depleted RNA sample processed data rrp40-s2-ribominus.csv S2 cells rrp40_s2_ribominus_bio-rep3 [RNA-Seq] Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 S2 EFO EFO_0001233 Rrp40 phred33 RiboMinus Eukaryote Kit for RNA-Seq (Invitrogen) P-GSE41950-2 ArrayExpress P-GSE41950-5 ArrayExpress P-GSE41950-6 ArrayExpress GSM1055197 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1055197 SRX212012 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE41950-7 ArrayExpress SRR638061 SRR638061 S2 EFO EFO_0001233 not specified Rrp40 phred33 RiboMinus Eukaryote Kit for RNA-Seq (Invitrogen) GSM1055196 1 post-trizol Poly(A)+ RNA sample processed data rrp40-s2-polyA.csv S2 cells rrp40_s2_polya_bio-rep3 [RNA-Seq] Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 S2 EFO EFO_0001233 Rrp40 phred33 Poly(A)Purist MAG or MicroPoly(A)Purist Kit (Ambion) P-GSE41950-2 ArrayExpress P-GSE41950-5 ArrayExpress P-GSE41950-6 ArrayExpress GSM1055196 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1055196 SRX212011 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE41950-7 ArrayExpress SRR638060 SRR638060 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR638/SRR638060/SRR638060.fastq.gz S2 EFO EFO_0001233 not specified Rrp40 phred33 Poly(A)Purist MAG or MicroPoly(A)Purist Kit (Ambion) GSM1055195 1 post-trizol RiboMinus_rRNA depleted RNA sample S3 cells gfp_s3_ribominus_bio-rep3 [RNA-Seq] Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 S3 GFP phred33 RiboMinus Eukaryote Kit for RNA-Seq (Invitrogen) P-GSE41950-2 ArrayExpress P-GSE41950-5 ArrayExpress P-GSE41950-6 ArrayExpress GSM1055195 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1055195 SRX212010 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE41950-7 ArrayExpress SRR638059 SRR638059 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR638/SRR638059/SRR638059.fastq.gz S3 not specified GFP phred33 RiboMinus Eukaryote Kit for RNA-Seq (Invitrogen) GSM1055194 1 post-trizol RiboMinus_rRNA depleted RNA sample S3 cells gfp_s3_ribominus_bio-rep2_tech-rep2 [RNA-Seq] Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 S3 GFP phred33 RiboMinus Eukaryote Kit for RNA-Seq (Invitrogen) P-GSE41950-2 ArrayExpress P-GSE41950-5 ArrayExpress P-GSE41950-6 ArrayExpress GSM1055194 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1055194 SRX212009 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE41950-7 ArrayExpress SRR638058 SRR638058 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR638/SRR638058/SRR638058.fastq.gz S3 not specified GFP phred33 RiboMinus Eukaryote Kit for RNA-Seq (Invitrogen) GSM1055193 1 post-trizol RiboMinus_rRNA depleted RNA sample S3 cells gfp_s3_ribominus_bio-rep2_tech-rep1 [RNA-Seq] Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 S3 GFP phred64 RiboMinus Eukaryote Kit for RNA-Seq (Invitrogen) P-GSE41950-2 ArrayExpress P-GSE41950-5 ArrayExpress P-GSE41950-6 ArrayExpress GSM1055193 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1055193 SRX212008 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE41950-7 ArrayExpress SRR638057 SRR638057 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR638/SRR638057/SRR638057.fastq.gz S3 not specified GFP phred64 RiboMinus Eukaryote Kit for RNA-Seq (Invitrogen) GSM1055192 1 post-trizol Poly(A)+ RNA sample S3 cells gfp_s3_polya_bio-rep3 [RNA-Seq] Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 S3 GFP phred33 Poly(A)Purist MAG or MicroPoly(A)Purist Kit (Ambion) P-GSE41950-2 ArrayExpress P-GSE41950-5 ArrayExpress P-GSE41950-6 ArrayExpress GSM1055192 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1055192 SRX212007 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE41950-7 ArrayExpress SRR638056 SRR638056 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR638/SRR638056/SRR638056.fastq.gz S3 not specified GFP phred33 Poly(A)Purist MAG or MicroPoly(A)Purist Kit (Ambion) GSM1055191 1 post-trizol Poly(A)+ RNA sample S3 cells gfp_s3_polya_bio-rep2_tech-rep2 [RNA-Seq] Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 S3 GFP phred33 Poly(A)Purist MAG or MicroPoly(A)Purist Kit (Ambion) P-GSE41950-2 ArrayExpress P-GSE41950-5 ArrayExpress P-GSE41950-6 ArrayExpress GSM1055191 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1055191 SRX212006 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE41950-7 ArrayExpress SRR638055 SRR638055 S3 not specified GFP phred33 Poly(A)Purist MAG or MicroPoly(A)Purist Kit (Ambion) GSM1055190 1 post-trizol Poly(A)+ RNA sample S3 cells gfp_s3_polya_bio-rep2_tech-rep1 [RNA-Seq] Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 S3 GFP phred64 Poly(A)Purist MAG or MicroPoly(A)Purist Kit (Ambion) P-GSE41950-2 ArrayExpress P-GSE41950-5 ArrayExpress P-GSE41950-6 ArrayExpress GSM1055190 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1055190 SRX212005 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE41950-7 ArrayExpress SRR638054 SRR638054 S3 not specified GFP phred64 Poly(A)Purist MAG or MicroPoly(A)Purist Kit (Ambion) GSM1055189 1 post-trizol Poly(A)+ RNA sample S3 cells gfp_s3_polya_bio-rep1 [RNA-Seq] Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 S3 GFP phred64 Poly(A)Purist MAG or MicroPoly(A)Purist Kit (Ambion) P-GSE41950-2 ArrayExpress P-GSE41950-5 ArrayExpress P-GSE41950-6 ArrayExpress GSM1055189 extract 1 Illumina Genome Analyzer II cDNA transcriptomic RNA-Seq total RNA GSM1055189 SRX212004 Illumina Genome Analyzer II (Drosophila melanogaster) sequencing assay P-GSE41950-7 ArrayExpress SRR638053 SRR638053 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR638/SRR638053/SRR638053.fastq.gz S3 not specified GFP phred64 Poly(A)Purist MAG or MicroPoly(A)Purist Kit (Ambion) GSM1055188 1 post-trizol RiboMinus_rRNA depleted RNA sample S2 cells gfp_s2_ribominus_bio-rep3 [RNA-Seq] Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 S2 EFO EFO_0001233 GFP phred33 RiboMinus Eukaryote Kit for RNA-Seq (Invitrogen) P-GSE41950-2 ArrayExpress P-GSE41950-5 ArrayExpress P-GSE41950-6 ArrayExpress GSM1055188 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1055188 SRX212003 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE41950-7 ArrayExpress SRR638052 SRR638052 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR638/SRR638052/SRR638052.fastq.gz S2 EFO EFO_0001233 not specified GFP phred33 RiboMinus Eukaryote Kit for RNA-Seq (Invitrogen) GSM1055187 1 post-trizol Poly(A)+ RNA sample S2 cells gfp_s2_polya_bio-rep3 [RNA-Seq] Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 S2 EFO EFO_0001233 GFP phred33 Poly(A)Purist MAG or MicroPoly(A)Purist Kit (Ambion) P-GSE41950-2 ArrayExpress P-GSE41950-5 ArrayExpress P-GSE41950-6 ArrayExpress GSM1055187 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1055187 SRX212002 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE41950-7 ArrayExpress SRR638051 SRR638051 S2 EFO EFO_0001233 not specified GFP phred33 Poly(A)Purist MAG or MicroPoly(A)Purist Kit (Ambion) GSM1055186 1 post-trizol Poly(A)+ RNA sample S2 cells gfp_s2_polya_bio-rep1 [RNA-Seq] Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 S2 EFO EFO_0001233 GFP phred64 Poly(A)Purist MAG or MicroPoly(A)Purist Kit (Ambion) P-GSE41950-2 ArrayExpress P-GSE41950-5 ArrayExpress P-GSE41950-6 ArrayExpress GSM1055186 extract 1 Illumina Genome Analyzer II cDNA transcriptomic RNA-Seq total RNA GSM1055186 SRX212001 Illumina Genome Analyzer II (Drosophila melanogaster) sequencing assay P-GSE41950-7 ArrayExpress SRR638050 SRR638050 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR638/SRR638050/SRR638050.fastq.gz S2 EFO EFO_0001233 not specified GFP phred64 Poly(A)Purist MAG or MicroPoly(A)Purist Kit (Ambion) GSM1055185 1 post-trizol RiboMinus_rRNA depleted RNA sample processed data csl4-s3-ribominus.csv S3 cells csl4_s3_ribominus_bio-rep3 [RNA-Seq] Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 S3 Csl4 phred33 RiboMinus Eukaryote Kit for RNA-Seq (Invitrogen) P-GSE41950-2 ArrayExpress P-GSE41950-5 ArrayExpress P-GSE41950-6 ArrayExpress GSM1055185 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1055185 SRX212000 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE41950-7 ArrayExpress SRR638049 SRR638049 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR638/SRR638049/SRR638049.fastq.gz S3 not specified Csl4 phred33 RiboMinus Eukaryote Kit for RNA-Seq (Invitrogen) GSM1055184 1 post-trizol RiboMinus_rRNA depleted RNA sample processed data csl4-s3-ribominus.csv S3 cells csl4_s3_ribominus_bio-rep2_tech-rep2 [RNA-Seq] Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 S3 Csl4 phred33 RiboMinus Eukaryote Kit for RNA-Seq (Invitrogen) P-GSE41950-2 ArrayExpress P-GSE41950-5 ArrayExpress P-GSE41950-6 ArrayExpress GSM1055184 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1055184 SRX211999 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE41950-7 ArrayExpress SRR638048 SRR638048 S3 not specified Csl4 phred33 RiboMinus Eukaryote Kit for RNA-Seq (Invitrogen) GSM1055183 1 post-trizol RiboMinus_rRNA depleted RNA sample processed data csl4-s3-ribominus.csv S3 cells csl4_s3_ribominus_bio-rep2_tech-rep1 [RNA-Seq] Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 S3 Csl4 phred64 RiboMinus Eukaryote Kit for RNA-Seq (Invitrogen) P-GSE41950-2 ArrayExpress P-GSE41950-5 ArrayExpress P-GSE41950-6 ArrayExpress GSM1055183 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1055183 SRX211998 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE41950-7 ArrayExpress SRR638047 SRR638047 S3 not specified Csl4 phred64 RiboMinus Eukaryote Kit for RNA-Seq (Invitrogen) GSM1055181 1 post-trizol Poly(A)+ RNA sample processed data csl4-s3-polyA.csv S3 cells csl4_s3_polya_bio-rep3 [RNA-Seq] Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 S3 Csl4 phred33 Poly(A)Purist MAG or MicroPoly(A)Purist Kit (Ambion) P-GSE41950-2 ArrayExpress P-GSE41950-5 ArrayExpress P-GSE41950-6 ArrayExpress GSM1055181 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1055181 SRX211997 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE41950-7 ArrayExpress SRR638046 SRR638046 S3 not specified Csl4 phred33 Poly(A)Purist MAG or MicroPoly(A)Purist Kit (Ambion) GSM1055179 1 post-trizol Poly(A)+ RNA sample processed data csl4-s3-polyA.csv S3 cells csl4_s3_polya_bio-rep1 [RNA-Seq] Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 S3 Csl4 phred64 Poly(A)Purist MAG or MicroPoly(A)Purist Kit (Ambion) P-GSE41950-2 ArrayExpress P-GSE41950-5 ArrayExpress P-GSE41950-6 ArrayExpress GSM1055179 extract 1 Illumina Genome Analyzer II cDNA transcriptomic RNA-Seq total RNA GSM1055179 SRX211996 Illumina Genome Analyzer II (Drosophila melanogaster) sequencing assay P-GSE41950-7 ArrayExpress SRR638045 SRR638045 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR638/SRR638045/SRR638045.fastq.gz S3 not specified Csl4 phred64 Poly(A)Purist MAG or MicroPoly(A)Purist Kit (Ambion) GSM1055177 1 post-trizol RiboMinus_rRNA depleted RNA sample processed data csl4-s2-ribominus.csv S2 cells csl4_s2_ribominus_bio-rep3 [RNA-Seq] Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 S2 EFO EFO_0001233 Csl4 phred33 RiboMinus Eukaryote Kit for RNA-Seq (Invitrogen) P-GSE41950-2 ArrayExpress P-GSE41950-5 ArrayExpress P-GSE41950-6 ArrayExpress GSM1055177 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1055177 SRX211995 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE41950-7 ArrayExpress SRR638044 SRR638044 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR638/SRR638044/SRR638044.fastq.gz S2 EFO EFO_0001233 not specified Csl4 phred33 RiboMinus Eukaryote Kit for RNA-Seq (Invitrogen) GSM1055176 1 post-trizol Poly(A)+ RNA sample processed data csl4-s2-polyA.csv S2 cells csl4_s2_polya_bio-rep3 [RNA-Seq] Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 S2 EFO EFO_0001233 Csl4 phred33 Poly(A)Purist MAG or MicroPoly(A)Purist Kit (Ambion) P-GSE41950-2 ArrayExpress P-GSE41950-5 ArrayExpress P-GSE41950-6 ArrayExpress GSM1055176 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1055176 SRX211994 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE41950-7 ArrayExpress SRR638043 SRR638043 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR638/SRR638043/SRR638043.fastq.gz S2 EFO EFO_0001233 not specified Csl4 phred33 Poly(A)Purist MAG or MicroPoly(A)Purist Kit (Ambion) GSM1055175 1 post-trizol Poly(A)+ RNA sample processed data csl4-s2-polyA.csv S2 cells csl4_s2_polya_bio-rep1 [RNA-Seq] Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 S2 EFO EFO_0001233 Csl4 phred64 Poly(A)Purist MAG or MicroPoly(A)Purist Kit (Ambion) P-GSE41950-2 ArrayExpress P-GSE41950-5 ArrayExpress P-GSE41950-6 ArrayExpress GSM1055175 extract 1 Illumina Genome Analyzer II cDNA transcriptomic RNA-Seq total RNA GSM1055175 SRX211993 Illumina Genome Analyzer II (Drosophila melanogaster) sequencing assay P-GSE41950-7 ArrayExpress SRR638042 SRR638042 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR638/SRR638042/SRR638042.fastq.gz S2 EFO EFO_0001233 not specified Csl4 phred64 Poly(A)Purist MAG or MicroPoly(A)Purist Kit (Ambion) GSM1028103 1 S3 cells tech_rep2_input_S3 [ChIP-Seq] Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 S3 late embryonic cells none phred33 P-GSE41950-2 ArrayExpress P-GSE41950-1 ArrayExpress P-GSE41950-3 ArrayExpress GSM1028103 extract 1 Illumina HiSeq 2000 ChIP genomic ChIP-Seq genomic DNA GSM1028103 SRX202129 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE41950-4 ArrayExpress SRR610275 SRR610275 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR610/SRR610275/SRR610275.fastq.gz S3 late embryonic cells none not specified phred33 not specified GSM1028102 1 S3 cells tech_rep1_input_S3 [ChIP-Seq] Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 S3 late embryonic cells none phred64 P-GSE41950-2 ArrayExpress P-GSE41950-1 ArrayExpress P-GSE41950-3 ArrayExpress GSM1028102 extract 1 Illumina Genome Analyzer II ChIP genomic ChIP-Seq genomic DNA GSM1028102 SRX202128 Illumina Genome Analyzer II (Drosophila melanogaster) sequencing assay P-GSE41950-4 ArrayExpress SRR610274 SRR610274 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR610/SRR610274/SRR610274.fastq.gz S3 late embryonic cells none not specified phred64 not specified GSM1028101 1 Processed data Suhw_S3.bed S3 cells Suhw_S3 [ChIP-Seq] Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 S3 late embryonic cells Su(Hw) phred64 P-GSE41950-2 ArrayExpress P-GSE41950-1 ArrayExpress P-GSE41950-3 ArrayExpress GSM1028101 extract 1 Illumina Genome Analyzer II ChIP genomic ChIP-Seq genomic DNA GSM1028101 SRX202127 Illumina Genome Analyzer II (Drosophila melanogaster) sequencing assay P-GSE41950-4 ArrayExpress SRR610273 SRR610273 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR610/SRR610273/SRR610273.fastq.gz S3 late embryonic cells Su(Hw) not specified phred64 not specified GSM1028100 1 Processed data Rrp40_S3.bed S3 cells tech_rep2_Rrp40_S3 [ChIP-Seq] Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 S3 late embryonic cells Rrp40 phred33 P-GSE41950-2 ArrayExpress P-GSE41950-1 ArrayExpress P-GSE41950-3 ArrayExpress GSM1028100 extract 1 Illumina HiSeq 2000 ChIP genomic ChIP-Seq genomic DNA GSM1028100 SRX202126 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE41950-4 ArrayExpress SRR610272 SRR610272 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR610/SRR610272/SRR610272.fastq.gz S3 late embryonic cells Rrp40 not specified phred33 not specified GSM1028099 1 Processed data Rrp40_S3.bed S3 cells tech_rep1_Rrp40_S3 [ChIP-Seq] Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 S3 late embryonic cells Rrp40 phred64 P-GSE41950-2 ArrayExpress P-GSE41950-1 ArrayExpress P-GSE41950-3 ArrayExpress GSM1028099 extract 1 Illumina Genome Analyzer II ChIP genomic ChIP-Seq genomic DNA GSM1028099 SRX202125 Illumina Genome Analyzer II (Drosophila melanogaster) sequencing assay P-GSE41950-4 ArrayExpress SRR610271 SRR610271 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR610/SRR610271/SRR610271.fastq.gz S3 late embryonic cells Rrp40 not specified phred64 not specified GSM1028098 1 Processed data Rrp6_S3.bed S3 cells tech_rep2_Rrp6_S3 [ChIP-Seq] Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 S3 late embryonic cells Rrp6 phred33 P-GSE41950-2 ArrayExpress P-GSE41950-1 ArrayExpress P-GSE41950-3 ArrayExpress GSM1028098 extract 1 Illumina HiSeq 2000 ChIP genomic ChIP-Seq genomic DNA GSM1028098 SRX202124 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE41950-4 ArrayExpress SRR610270 SRR610270 S3 late embryonic cells Rrp6 not specified phred33 not specified GSM1028097 1 Processed data Rrp6_S3.bed S3 cells tech_rep1_Rrp6_S3 [ChIP-Seq] Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 S3 late embryonic cells Rrp6 phred64 P-GSE41950-2 ArrayExpress P-GSE41950-1 ArrayExpress P-GSE41950-3 ArrayExpress GSM1028097 extract 1 Illumina Genome Analyzer II ChIP genomic ChIP-Seq genomic DNA GSM1028097 SRX202123 Illumina Genome Analyzer II (Drosophila melanogaster) sequencing assay P-GSE41950-4 ArrayExpress SRR610269 SRR610269 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR610/SRR610269/SRR610269.fastq.gz S3 late embryonic cells Rrp6 not specified phred64 not specified GSM1028096 1 S2 cells tech_rep2_input_S2 [ChIP-Seq] Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 S2 late embryonic cells none phred33 P-GSE41950-2 ArrayExpress P-GSE41950-1 ArrayExpress P-GSE41950-3 ArrayExpress GSM1028096 extract 1 Illumina HiSeq 2000 ChIP genomic ChIP-Seq genomic DNA GSM1028096 SRX202122 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE41950-4 ArrayExpress SRR610268 SRR610268 S2 late embryonic cells none not specified phred33 not specified GSM1028095 1 S2 cells tech_rep1_input_S2 [ChIP-Seq] Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 S2 late embryonic cells none phred64 P-GSE41950-2 ArrayExpress P-GSE41950-1 ArrayExpress P-GSE41950-3 ArrayExpress GSM1028095 extract 1 Illumina Genome Analyzer II ChIP genomic ChIP-Seq genomic DNA GSM1028095 SRX202121 Illumina Genome Analyzer II (Drosophila melanogaster) sequencing assay P-GSE41950-4 ArrayExpress SRR610267 SRR610267 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR610/SRR610267/SRR610267.fastq.gz S2 late embryonic cells none not specified phred64 not specified GSM1028094 1 Processed data Suhw_S2.bed S2 cells Suhw_S2 [ChIP-Seq] Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 S2 late embryonic cells Su(Hw) phred64 P-GSE41950-2 ArrayExpress P-GSE41950-1 ArrayExpress P-GSE41950-3 ArrayExpress GSM1028094 extract 1 Illumina Genome Analyzer II ChIP genomic ChIP-Seq genomic DNA GSM1028094 SRX202120 Illumina Genome Analyzer II (Drosophila melanogaster) sequencing assay P-GSE41950-4 ArrayExpress SRR610266 SRR610266 S2 late embryonic cells Su(Hw) not specified phred64 not specified GSM1028093 1 Processed data Rrp40_S2.bed S2 cells tech_rep2_Rrp40_S2 [ChIP-Seq] Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 S2 late embryonic cells Rrp40 phred33 P-GSE41950-2 ArrayExpress P-GSE41950-1 ArrayExpress P-GSE41950-3 ArrayExpress GSM1028093 extract 1 Illumina HiSeq 2000 ChIP genomic ChIP-Seq genomic DNA GSM1028093 SRX202119 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE41950-4 ArrayExpress SRR610265 SRR610265 S2 late embryonic cells Rrp40 not specified phred33 not specified GSM1028092 1 Processed data Rrp40_S2.bed S2 cells tech_rep1_Rrp40_S2 [ChIP-Seq] Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 S2 late embryonic cells Rrp40 phred64 P-GSE41950-2 ArrayExpress P-GSE41950-1 ArrayExpress P-GSE41950-3 ArrayExpress GSM1028092 extract 1 Illumina Genome Analyzer II ChIP genomic ChIP-Seq genomic DNA GSM1028092 SRX202118 Illumina Genome Analyzer II (Drosophila melanogaster) sequencing assay P-GSE41950-4 ArrayExpress SRR610264 SRR610264 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR610/SRR610264/SRR610264.fastq.gz S2 late embryonic cells Rrp40 not specified phred64 not specified GSM1028091 1 Processed data Rrp6_S2.bed S2 cells tech_rep2_Rrp6_S2 [ChIP-Seq] Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 S2 late embryonic cells Rrp6 phred33 P-GSE41950-2 ArrayExpress P-GSE41950-1 ArrayExpress P-GSE41950-3 ArrayExpress GSM1028091 extract 1 Illumina HiSeq 2000 ChIP genomic ChIP-Seq genomic DNA GSM1028091 SRX202117 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE41950-4 ArrayExpress SRR610263 SRR610263 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR610/SRR610263/SRR610263.fastq.gz S2 late embryonic cells Rrp6 not specified phred33 not specified GSM1028090 1 Processed data Rrp6_S2.bed S2 cells tech_rep1_Rrp6_S2 [ChIP-Seq] Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 S2 late embryonic cells Rrp6 phred64 P-GSE41950-2 ArrayExpress P-GSE41950-1 ArrayExpress P-GSE41950-3 ArrayExpress GSM1028090 extract 1 Illumina Genome Analyzer II ChIP genomic ChIP-Seq genomic DNA GSM1028090 SRX202116 Illumina Genome Analyzer II (Drosophila melanogaster) sequencing assay P-GSE41950-4 ArrayExpress SRR610262 SRR610262 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR610/SRR610262/SRR610262.fastq.gz S2 late embryonic cells Rrp6 not specified phred64 not specified