Source Name	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [Organism]	Term Source REF	Term Accession Number	Characteristics [cell type]	Characteristics [organism part]	Term Source REF	Term Accession Number	Characteristics [strain or line]	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Extract Name	Material Type	Protocol REF	Term Source REF	Labeled Extract Name	Label	Protocol REF	Term Source REF	Assay Name	Array Design REF	Term Source REF	Technology Type	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Term Source REF	Normalization Name	Derived Array Data File	Comment [Derived ArrayExpress FTP file]
GSM1025308 1	primary bone marrow derived mouse macrophages, treated with LPS and PGE, harvested after 1 hour of treatment	macrophages_treated_with_LPS+PGE_1hr_rep_4	Mus musculus	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090	primary macrophages	bone marrow	EFO	EFO_0000868	C57Bl/6 wild type mouse	P-GSE41833-2	ArrayExpress	P-GSE41833-3	ArrayExpress	P-GSE41833-4	ArrayExpress	GSM1025308 extract 1	total RNA	P-GSE41833-5	ArrayExpress	GSM1025308 LE 1	biotin	P-GSE41833-6	ArrayExpress	GSM1025308	A-GEOD-11533	ArrayExpress	array assay	P-GSE41833-7	ArrayExpress	P-GSE41833-8	ArrayExpress	GSM1025308_1h_PGE_LPS4_D05.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41833/E-GEOD-41833.raw.1.zip	P-GSE41833-1	ArrayExpress	GSM1025308_sample_table.txt norm	GSM1025308_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41833/E-GEOD-41833.processed.1.zip
GSM1025307 1	primary bone marrow derived mouse macrophages, treated with LPS and PGE, harvested after 1 hour of treatment	macrophages_treated_with_LPS+PGE_1hr_rep_3	Mus musculus	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090	primary macrophages	bone marrow	EFO	EFO_0000868	C57Bl/6 wild type mouse	P-GSE41833-2	ArrayExpress	P-GSE41833-3	ArrayExpress	P-GSE41833-4	ArrayExpress	GSM1025307 extract 1	total RNA	P-GSE41833-5	ArrayExpress	GSM1025307 LE 1	biotin	P-GSE41833-6	ArrayExpress	GSM1025307	A-GEOD-11533	ArrayExpress	array assay	P-GSE41833-7	ArrayExpress	P-GSE41833-8	ArrayExpress	GSM1025307_1h_PGE_LPS3_C05.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41833/E-GEOD-41833.raw.1.zip	P-GSE41833-1	ArrayExpress	GSM1025307_sample_table.txt norm	GSM1025307_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41833/E-GEOD-41833.processed.1.zip
GSM1025306 1	primary bone marrow derived mouse macrophages, treated with LPS and PGE, harvested after 1 hour of treatment	macrophages_treated_with_LPS+PGE_1hr_rep_2	Mus musculus	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090	primary macrophages	bone marrow	EFO	EFO_0000868	C57Bl/6 wild type mouse	P-GSE41833-2	ArrayExpress	P-GSE41833-3	ArrayExpress	P-GSE41833-4	ArrayExpress	GSM1025306 extract 1	total RNA	P-GSE41833-5	ArrayExpress	GSM1025306 LE 1	biotin	P-GSE41833-6	ArrayExpress	GSM1025306	A-GEOD-11533	ArrayExpress	array assay	P-GSE41833-7	ArrayExpress	P-GSE41833-8	ArrayExpress	GSM1025306_1h_PGE_LPS2_B05.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41833/E-GEOD-41833.raw.1.zip	P-GSE41833-1	ArrayExpress	GSM1025306_sample_table.txt norm	GSM1025306_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41833/E-GEOD-41833.processed.1.zip
GSM1025305 1	primary bone marrow derived mouse macrophages, treated with LPS and PGE, harvested after 1 hour of treatment	macrophages_treated_with_LPS+PGE_1hr_rep_1	Mus musculus	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090	primary macrophages	bone marrow	EFO	EFO_0000868	C57Bl/6 wild type mouse	P-GSE41833-2	ArrayExpress	P-GSE41833-3	ArrayExpress	P-GSE41833-4	ArrayExpress	GSM1025305 extract 1	total RNA	P-GSE41833-5	ArrayExpress	GSM1025305 LE 1	biotin	P-GSE41833-6	ArrayExpress	GSM1025305	A-GEOD-11533	ArrayExpress	array assay	P-GSE41833-7	ArrayExpress	P-GSE41833-8	ArrayExpress	GSM1025305_1h_PGE_LPS1_A05.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41833/E-GEOD-41833.raw.1.zip	P-GSE41833-1	ArrayExpress	GSM1025305_sample_table.txt norm	GSM1025305_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41833/E-GEOD-41833.processed.1.zip
GSM1025304 1	primary bone marrow derived mouse macrophages, treated with LPS, harvested after 1 hour of treatment	macrophages_treated_with_LPS_1hr_rep_3	Mus musculus	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090	primary macrophages	bone marrow	EFO	EFO_0000868	C57Bl/6 wild type mouse	P-GSE41833-2	ArrayExpress	P-GSE41833-3	ArrayExpress	P-GSE41833-4	ArrayExpress	GSM1025304 extract 1	total RNA	P-GSE41833-5	ArrayExpress	GSM1025304 LE 1	biotin	P-GSE41833-6	ArrayExpress	GSM1025304	A-GEOD-11533	ArrayExpress	array assay	P-GSE41833-7	ArrayExpress	P-GSE41833-8	ArrayExpress	GSM1025304_1h_LPS3_G05.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41833/E-GEOD-41833.raw.1.zip	P-GSE41833-1	ArrayExpress	GSM1025304_sample_table.txt norm	GSM1025304_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41833/E-GEOD-41833.processed.1.zip
GSM1025303 1	primary bone marrow derived mouse macrophages, treated with LPS, harvested after 1 hour of treatment	macrophages_treated_with_LPS_1hr_rep_2	Mus musculus	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090	primary macrophages	bone marrow	EFO	EFO_0000868	C57Bl/6 wild type mouse	P-GSE41833-2	ArrayExpress	P-GSE41833-3	ArrayExpress	P-GSE41833-4	ArrayExpress	GSM1025303 extract 1	total RNA	P-GSE41833-5	ArrayExpress	GSM1025303 LE 1	biotin	P-GSE41833-6	ArrayExpress	GSM1025303	A-GEOD-11533	ArrayExpress	array assay	P-GSE41833-7	ArrayExpress	P-GSE41833-8	ArrayExpress	GSM1025303_1h_LPS2_F05.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41833/E-GEOD-41833.raw.1.zip	P-GSE41833-1	ArrayExpress	GSM1025303_sample_table.txt norm	GSM1025303_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41833/E-GEOD-41833.processed.1.zip
GSM1025302 1	primary bone marrow derived mouse macrophages, treated with LPS, harvested after 1 hour of treatment	macrophages_treated_with_LPS_1hr_rep_1	Mus musculus	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090	primary macrophages	bone marrow	EFO	EFO_0000868	C57Bl/6 wild type mouse	P-GSE41833-2	ArrayExpress	P-GSE41833-3	ArrayExpress	P-GSE41833-4	ArrayExpress	GSM1025302 extract 1	total RNA	P-GSE41833-5	ArrayExpress	GSM1025302 LE 1	biotin	P-GSE41833-6	ArrayExpress	GSM1025302	A-GEOD-11533	ArrayExpress	array assay	P-GSE41833-7	ArrayExpress	P-GSE41833-8	ArrayExpress	GSM1025302_1h_LPS1_E05.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41833/E-GEOD-41833.raw.1.zip	P-GSE41833-1	ArrayExpress	GSM1025302_sample_table.txt norm	GSM1025302_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41833/E-GEOD-41833.processed.1.zip
GSM1025301 1	primary bone marrow derived mouse macrophages, untreated	macrophages_untreated_control_rep4	Mus musculus	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090	primary macrophages	bone marrow	EFO	EFO_0000868	C57Bl/6 wild type mouse	P-GSE41833-2	ArrayExpress	P-GSE41833-3	ArrayExpress	P-GSE41833-4	ArrayExpress	GSM1025301 extract 1	total RNA	P-GSE41833-5	ArrayExpress	GSM1025301 LE 1	biotin	P-GSE41833-6	ArrayExpress	GSM1025301	A-GEOD-11533	ArrayExpress	array assay	P-GSE41833-7	ArrayExpress	P-GSE41833-8	ArrayExpress	GSM1025301_C4_D05.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41833/E-GEOD-41833.raw.1.zip	P-GSE41833-1	ArrayExpress	GSM1025301_sample_table.txt norm	GSM1025301_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41833/E-GEOD-41833.processed.1.zip
GSM1025300 1	primary bone marrow derived mouse macrophages, untreated	macrophages_untreated_control_rep3	Mus musculus	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090	primary macrophages	bone marrow	EFO	EFO_0000868	C57Bl/6 wild type mouse	P-GSE41833-2	ArrayExpress	P-GSE41833-3	ArrayExpress	P-GSE41833-4	ArrayExpress	GSM1025300 extract 1	total RNA	P-GSE41833-5	ArrayExpress	GSM1025300 LE 1	biotin	P-GSE41833-6	ArrayExpress	GSM1025300	A-GEOD-11533	ArrayExpress	array assay	P-GSE41833-7	ArrayExpress	P-GSE41833-8	ArrayExpress	GSM1025300_C3_C05.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41833/E-GEOD-41833.raw.1.zip	P-GSE41833-1	ArrayExpress	GSM1025300_sample_table.txt norm	GSM1025300_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41833/E-GEOD-41833.processed.1.zip
GSM1025299 1	primary bone marrow derived mouse macrophages, untreated	macrophages_untreated_control_rep2	Mus musculus	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090	primary macrophages	bone marrow	EFO	EFO_0000868	C57Bl/6 wild type mouse	P-GSE41833-2	ArrayExpress	P-GSE41833-3	ArrayExpress	P-GSE41833-4	ArrayExpress	GSM1025299 extract 1	total RNA	P-GSE41833-5	ArrayExpress	GSM1025299 LE 1	biotin	P-GSE41833-6	ArrayExpress	GSM1025299	A-GEOD-11533	ArrayExpress	array assay	P-GSE41833-7	ArrayExpress	P-GSE41833-8	ArrayExpress	GSM1025299_C2_B05.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41833/E-GEOD-41833.raw.1.zip	P-GSE41833-1	ArrayExpress	GSM1025299_sample_table.txt norm	GSM1025299_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41833/E-GEOD-41833.processed.1.zip
GSM1025298 1	primary bone marrow derived mouse macrophages, untreated	macrophages_untreated_control_rep1	Mus musculus	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090	primary macrophages	bone marrow	EFO	EFO_0000868	C57Bl/6 wild type mouse	P-GSE41833-2	ArrayExpress	P-GSE41833-3	ArrayExpress	P-GSE41833-4	ArrayExpress	GSM1025298 extract 1	total RNA	P-GSE41833-5	ArrayExpress	GSM1025298 LE 1	biotin	P-GSE41833-6	ArrayExpress	GSM1025298	A-GEOD-11533	ArrayExpress	array assay	P-GSE41833-7	ArrayExpress	P-GSE41833-8	ArrayExpress	GSM1025298_C1_A05.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41833/E-GEOD-41833.raw.1.zip	P-GSE41833-1	ArrayExpress	GSM1025298_sample_table.txt norm	GSM1025298_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41833/E-GEOD-41833.processed.1.zip