Source Name Comment [Sample_description] Comment [Sample_source_name] Comment [Sample_title] Characteristics [cell line] Term Source REF Term Accession Number Characteristics [cell line type] Characteristics [cell type] Characteristics [molecule subtype] Characteristics [organism] Term Source REF Term Accession Number Characteristics [organism part] Term Source REF Term Accession Number Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Extract Name Material Type Protocol REF Term Source REF Labeled Extract Name Label Protocol REF Term Source REF Assay Name Array Design REF Term Source REF Technology Type Protocol REF Term Source REF Array Data File Comment [ArrayExpress FTP file] Protocol REF Term Source REF Normalization Name Derived Array Data File Comment [Derived ArrayExpress FTP file] FactorValue [CELL LINE] Term Source REF Term Accession Number FactorValue [CELL LINE TYPE] FactorValue [CELL TYPE] GSM984493 1 MCF12A Immortalized breast epithelium cell line Immortalized breast epithelium cell line MCF12A MCF12A EFO EFO_0001202 Immortalized breast epithelium cell line Immortalized breast epithelium cells small RNA Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 breast EFO EFO_0000854 P-GSE40056-2 ArrayExpress P-GSE40056-3 ArrayExpress P-GSE40056-4 ArrayExpress GSM984493 extract 1 total RNA P-GSE40056-5 ArrayExpress GSM984493 LE 1 Biotin P-GSE40056-6 ArrayExpress GSM984493 A-GEOD-8786 ArrayExpress array assay P-GSE40056-7 ArrayExpress GSM984493_MCF12A_miRNA-1_0_.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-40056/E-GEOD-40056.raw.1.zip P-GSE40056-1 ArrayExpress GSM984493_sample_table.txt norm GSM984493_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-40056/E-GEOD-40056.processed.1.zip MCF12A EFO EFO_0001202 Immortalized breast epithelium cell line Immortalized breast epithelium cells GSM984492 1 MCF10A Immortalized breast epithelium cell line Immortalized breast epithelium cell line MCF10A MCF10A Immortalized breast epithelium cell line Immortalized breast epithelium cells small RNA Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 breast EFO EFO_0000854 P-GSE40056-2 ArrayExpress P-GSE40056-3 ArrayExpress P-GSE40056-4 ArrayExpress GSM984492 extract 1 total RNA P-GSE40056-5 ArrayExpress GSM984492 LE 1 Biotin P-GSE40056-6 ArrayExpress GSM984492 A-GEOD-8786 ArrayExpress array assay P-GSE40056-7 ArrayExpress GSM984492_MCF10A_miRNA-1_0_.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-40056/E-GEOD-40056.raw.1.zip P-GSE40056-1 ArrayExpress GSM984492_sample_table.txt norm GSM984492_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-40056/E-GEOD-40056.processed.1.zip MCF10A Immortalized breast epithelium cell line Immortalized breast epithelium cells GSM984491 1 SUM159 aggressive breast cancer cell line Breast cancer cell line SUM159 SUM159 Aggressive cell line Breast cancer cells small RNA Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 breast EFO EFO_0000854 P-GSE40056-2 ArrayExpress P-GSE40056-3 ArrayExpress P-GSE40056-4 ArrayExpress GSM984491 extract 1 total RNA P-GSE40056-5 ArrayExpress GSM984491 LE 1 Biotin P-GSE40056-6 ArrayExpress GSM984491 A-GEOD-8786 ArrayExpress array assay P-GSE40056-7 ArrayExpress GSM984491_SUM159_miRNA-1_0_.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-40056/E-GEOD-40056.raw.1.zip P-GSE40056-1 ArrayExpress GSM984491_sample_table.txt norm GSM984491_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-40056/E-GEOD-40056.processed.1.zip SUM159 Aggressive cell line Breast cancer cells GSM984490 1 BT549 aggressive breast cancer cell line Breast cancer cell line BT549 BT549 EFO EFO_0001096 Aggressive cell line Breast cancer cells small RNA Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 breast EFO EFO_0000854 P-GSE40056-2 ArrayExpress P-GSE40056-3 ArrayExpress P-GSE40056-4 ArrayExpress GSM984490 extract 1 total RNA P-GSE40056-5 ArrayExpress GSM984490 LE 1 Biotin P-GSE40056-6 ArrayExpress GSM984490 A-GEOD-8786 ArrayExpress array assay P-GSE40056-7 ArrayExpress GSM984490_BT549_miRNA-1_0_.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-40056/E-GEOD-40056.raw.1.zip P-GSE40056-1 ArrayExpress GSM984490_sample_table.txt norm GSM984490_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-40056/E-GEOD-40056.processed.1.zip BT549 EFO EFO_0001096 Aggressive cell line Breast cancer cells GSM984489 1 HS578T aggressive breast cancer cell line Breast cancer cell line HS578T HS578T EFO EFO_0001192 Aggressive cell line Breast cancer cells small RNA Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 breast EFO EFO_0000854 P-GSE40056-2 ArrayExpress P-GSE40056-3 ArrayExpress P-GSE40056-4 ArrayExpress GSM984489 extract 1 total RNA P-GSE40056-5 ArrayExpress GSM984489 LE 1 Biotin P-GSE40056-6 ArrayExpress GSM984489 A-GEOD-8786 ArrayExpress array assay P-GSE40056-7 ArrayExpress GSM984489_HS578T_miRNA-1_0_.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-40056/E-GEOD-40056.raw.1.zip P-GSE40056-1 ArrayExpress GSM984489_sample_table.txt norm GSM984489_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-40056/E-GEOD-40056.processed.1.zip HS578T EFO EFO_0001192 Aggressive cell line Breast cancer cells GSM984488 1 MDA-MB-231 aggressive breast cancer cell line Breast cancer cell line MDA-MB-231 MDA-MB-231 Aggressive cell line Breast cancer cells small RNA Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 breast EFO EFO_0000854 P-GSE40056-2 ArrayExpress P-GSE40056-3 ArrayExpress P-GSE40056-4 ArrayExpress GSM984488 extract 1 total RNA P-GSE40056-5 ArrayExpress GSM984488 LE 1 Biotin P-GSE40056-6 ArrayExpress GSM984488 A-GEOD-8786 ArrayExpress array assay P-GSE40056-7 ArrayExpress GSM984488_MDA-MB-231_miRNA-1_0_.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-40056/E-GEOD-40056.raw.1.zip P-GSE40056-1 ArrayExpress GSM984488_sample_table.txt norm GSM984488_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-40056/E-GEOD-40056.processed.1.zip MDA-MB-231 Aggressive cell line Breast cancer cells GSM984487 1 SKBR3 Less-aggressive breast cancer cell line Breast cancer cell line SK-BR3 SK-BR3 Less-aggressive cell line Breast cancer cells small RNA Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 breast EFO EFO_0000854 P-GSE40056-2 ArrayExpress P-GSE40056-3 ArrayExpress P-GSE40056-4 ArrayExpress GSM984487 extract 1 total RNA P-GSE40056-5 ArrayExpress GSM984487 LE 1 Biotin P-GSE40056-6 ArrayExpress GSM984487 A-GEOD-8786 ArrayExpress array assay P-GSE40056-7 ArrayExpress GSM984487_SKBR3_miRNA-1_0_.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-40056/E-GEOD-40056.raw.1.zip P-GSE40056-1 ArrayExpress GSM984487_sample_table.txt norm GSM984487_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-40056/E-GEOD-40056.processed.1.zip SK-BR3 Less-aggressive cell line Breast cancer cells GSM984486 1 MCF7 Less-aggressive breast cancer cell line Breast cancer cell line MCF7 MCF7 EFO EFO_0001203 Less-aggressive cell line Breast cancer cells small RNA Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 breast EFO EFO_0000854 P-GSE40056-2 ArrayExpress P-GSE40056-3 ArrayExpress P-GSE40056-4 ArrayExpress GSM984486 extract 1 total RNA P-GSE40056-5 ArrayExpress GSM984486 LE 1 Biotin P-GSE40056-6 ArrayExpress GSM984486 A-GEOD-8786 ArrayExpress array assay P-GSE40056-7 ArrayExpress GSM984486_MCF7_miRNA-1_0_.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-40056/E-GEOD-40056.raw.1.zip P-GSE40056-1 ArrayExpress GSM984486_sample_table.txt norm GSM984486_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-40056/E-GEOD-40056.processed.1.zip MCF7 EFO EFO_0001203 Less-aggressive cell line Breast cancer cells GSM984485 1 ZR-75-1 Less-aggressive breast cancer cell line Breast cancer cell line ZR-75-1 ZR-75-1 Less-aggressive cell line Breast cancer cells small RNA Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 breast EFO EFO_0000854 P-GSE40056-2 ArrayExpress P-GSE40056-3 ArrayExpress P-GSE40056-4 ArrayExpress GSM984485 extract 1 total RNA P-GSE40056-5 ArrayExpress GSM984485 LE 1 Biotin P-GSE40056-6 ArrayExpress GSM984485 A-GEOD-8786 ArrayExpress array assay P-GSE40056-7 ArrayExpress GSM984485_ZR-75-1_miRNA-1_0_.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-40056/E-GEOD-40056.raw.1.zip P-GSE40056-1 ArrayExpress GSM984485_sample_table.txt norm GSM984485_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-40056/E-GEOD-40056.processed.1.zip ZR-75-1 Less-aggressive cell line Breast cancer cells GSM984484 1 T47D Less-aggressive breast cancer cell line Breast cancer cell line T47D T47D EFO EFO_0001247 Less-aggressive cell line Breast cancer cells small RNA Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 breast EFO EFO_0000854 P-GSE40056-2 ArrayExpress P-GSE40056-3 ArrayExpress P-GSE40056-4 ArrayExpress GSM984484 extract 1 total RNA P-GSE40056-5 ArrayExpress GSM984484 LE 1 Biotin P-GSE40056-6 ArrayExpress GSM984484 A-GEOD-8786 ArrayExpress array assay P-GSE40056-7 ArrayExpress GSM984484_T47D_miRNA-1_0_.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-40056/E-GEOD-40056.raw.1.zip P-GSE40056-1 ArrayExpress GSM984484_sample_table.txt norm GSM984484_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-40056/E-GEOD-40056.processed.1.zip T47D EFO EFO_0001247 Less-aggressive cell line Breast cancer cells GSM984483 1 MDA-MB-468 Less-aggressive breast cancer cell line Breast cancer cell line MDA-MB-468 MDA-MB-468 Less-aggressive cell line Breast cancer cells small RNA Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 breast EFO EFO_0000854 P-GSE40056-2 ArrayExpress P-GSE40056-3 ArrayExpress P-GSE40056-4 ArrayExpress GSM984483 extract 1 total RNA P-GSE40056-5 ArrayExpress GSM984483 LE 1 Biotin P-GSE40056-6 ArrayExpress GSM984483 A-GEOD-8786 ArrayExpress array assay P-GSE40056-7 ArrayExpress GSM984483_MDA-MB-468_miRNA-1_0_.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-40056/E-GEOD-40056.raw.1.zip P-GSE40056-1 ArrayExpress GSM984483_sample_table.txt norm GSM984483_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-40056/E-GEOD-40056.processed.1.zip MDA-MB-468 Less-aggressive cell line Breast cancer cells GSM984482 1 BT474 Less-aggressive breast cancer cell line Breast cancer cell line BT474 BT474 EFO EFO_0001093 Less-aggressive cell line Breast cancer cells small RNA Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 breast EFO EFO_0000854 P-GSE40056-2 ArrayExpress P-GSE40056-3 ArrayExpress P-GSE40056-4 ArrayExpress GSM984482 extract 1 total RNA P-GSE40056-5 ArrayExpress GSM984482 LE 1 Biotin P-GSE40056-6 ArrayExpress GSM984482 A-GEOD-8786 ArrayExpress array assay P-GSE40056-7 ArrayExpress GSM984482_BT474_miRNA-1_0_.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-40056/E-GEOD-40056.raw.1.zip P-GSE40056-1 ArrayExpress GSM984482_sample_table.txt norm GSM984482_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-40056/E-GEOD-40056.processed.1.zip BT474 EFO EFO_0001093 Less-aggressive cell line Breast cancer cells