Source Name	Comment [Sample_description]	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [organism]	Term Source REF	Term Accession Number	Characteristics [rna subtype]	Term Source REF	Term Accession Number	Characteristics [strain or line]	Term Source REF	Term Accession Number	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Extract Name	Comment [INSTRUMENT_MODEL]	Comment [LIBRARY_SELECTION]	Comment [LIBRARY_SOURCE]	Comment [LIBRARY_STRATEGY]	Material Type	Assay Name	Comment [ENA_EXPERIMENT]	Comment [Platform_title]	Technology Type	Protocol REF	Term Source REF	Scan Name	Comment [ENA_RUN]	Comment [FASTQ_URI]	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	FactorValue [RNA SUBTYPE]	Term Source REF	Term Accession Number	FactorValue [STRAIN OR LINE]	Term Source REF	Term Accession Number
GSM1120729 1	Biological replicate of TL-seq. TL-Seq, +pyrosphosphatase	S288C yeast, TLSeq	S288C_TLSeq2	Saccharomyces cerevisiae	EFO	http://purl.obolibrary.org/obo/NCBITaxon_4932	  	  	  	S288C	  	  	P-GSE39074-2	ArrayExpress	P-GSE39074-1	ArrayExpress	P-GSE39074-5	ArrayExpress	GSM1120729 extract 1	Illumina HiSeq 2000	other	transcriptomic	OTHER	total RNA	GSM1120729	SRX264203	Illumina HiSeq 2000 (Saccharomyces cerevisiae)	sequencing assay	P-GSE39074-6	ArrayExpress	SRR825166	SRR825166	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR825/SRR825166/SRR825166.fastq.gz	GSM1120729_TLSeqBio2_LengthCalls.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-39074/E-GEOD-39074.processed.1.zip	not specified	  	  	S288C	  	        
GSM1120728 1	Biological replicate of TL-seq. TL-Seq, +pyrosphosphatase	S288C yeast, TLSeq	S288C_TLSeq1	Saccharomyces cerevisiae	EFO	http://purl.obolibrary.org/obo/NCBITaxon_4932	  	  	  	S288C	  	  	P-GSE39074-2	ArrayExpress	P-GSE39074-1	ArrayExpress	P-GSE39074-5	ArrayExpress	GSM1120728 extract 1	Illumina HiSeq 2000	other	transcriptomic	OTHER	total RNA	GSM1120728	SRX264202	Illumina HiSeq 2000 (Saccharomyces cerevisiae)	sequencing assay	P-GSE39074-6	ArrayExpress	SRR825165	SRR825165	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR825/SRR825165/SRR825165.fastq.gz	GSM1120728_TLSeqBio1_LengthCalls.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-39074/E-GEOD-39074.processed.1.zip	not specified	  	  	S288C	  	        
GSM955206 1	TATL-Seq, fraction 7	S288C_TATLSeq	S288C_TATLSeq7	Saccharomyces cerevisiae	EFO	http://purl.obolibrary.org/obo/NCBITaxon_4932	RNA, polysome purified	  	  	BY4742	  	  	P-GSE39074-2	ArrayExpress	P-GSE39074-1	ArrayExpress	P-GSE39074-3	ArrayExpress	GSM955206 extract 1	Illumina Genome Analyzer II	other	transcriptomic	OTHER	total RNA	GSM955206	SRX157551	Illumina Genome Analyzer II (Saccharomyces cerevisiae)	sequencing assay	P-GSE39074-4	ArrayExpress	SRR518053	SRR518053	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR518/SRR518053/SRR518053.fastq.gz	GSM955206_TATL-SeqFraction7.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-39074/E-GEOD-39074.processed.1.zip	RNA, polysome purified	  	  	BY4742	  	        
GSM955206 1	TATL-Seq, fraction 7	S288C_TATLSeq	S288C_TATLSeq7	Saccharomyces cerevisiae	EFO	http://purl.obolibrary.org/obo/NCBITaxon_4932	RNA, polysome purified	  	  	BY4742	  	  	P-GSE39074-2	ArrayExpress	P-GSE39074-1	ArrayExpress	P-GSE39074-3	ArrayExpress	GSM955206 extract 1	Illumina Genome Analyzer II	other	transcriptomic	OTHER	total RNA	GSM955206	SRX157551	Illumina Genome Analyzer II (Saccharomyces cerevisiae)	sequencing assay	P-GSE39074-4	ArrayExpress	SRR518053	SRR518053	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR518/SRR518053/SRR518053.fastq.gz	GSM955206_TATLSeqFraction7LengthCalls.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-39074/E-GEOD-39074.processed.1.zip	RNA, polysome purified	  	  	BY4742	  	        
GSM955205 1	TATL-Seq, fraction 6	S288C_TATLSeq	S288C_TATLSeq6	Saccharomyces cerevisiae	EFO	http://purl.obolibrary.org/obo/NCBITaxon_4932	RNA, polysome purified	  	  	BY4742	  	  	P-GSE39074-2	ArrayExpress	P-GSE39074-1	ArrayExpress	P-GSE39074-3	ArrayExpress	GSM955205 extract 1	Illumina Genome Analyzer II	other	transcriptomic	OTHER	total RNA	GSM955205	SRX157550	Illumina Genome Analyzer II (Saccharomyces cerevisiae)	sequencing assay	P-GSE39074-4	ArrayExpress	SRR518052	SRR518052	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR518/SRR518052/SRR518052.fastq.gz	GSM955205_TATLSeqFraction6LengthCalls.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-39074/E-GEOD-39074.processed.1.zip	RNA, polysome purified	  	  	BY4742	  	        
GSM955205 1	TATL-Seq, fraction 6	S288C_TATLSeq	S288C_TATLSeq6	Saccharomyces cerevisiae	EFO	http://purl.obolibrary.org/obo/NCBITaxon_4932	RNA, polysome purified	  	  	BY4742	  	  	P-GSE39074-2	ArrayExpress	P-GSE39074-1	ArrayExpress	P-GSE39074-3	ArrayExpress	GSM955205 extract 1	Illumina Genome Analyzer II	other	transcriptomic	OTHER	total RNA	GSM955205	SRX157550	Illumina Genome Analyzer II (Saccharomyces cerevisiae)	sequencing assay	P-GSE39074-4	ArrayExpress	SRR518052	SRR518052	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR518/SRR518052/SRR518052.fastq.gz	GSM955205_TATL-SeqFraction6.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-39074/E-GEOD-39074.processed.1.zip	RNA, polysome purified	  	  	BY4742	  	        
GSM955204 1	TATL-Seq, fraction 5	S288C_TATLSeq	S288C_TATLSeq5	Saccharomyces cerevisiae	EFO	http://purl.obolibrary.org/obo/NCBITaxon_4932	RNA, polysome purified	  	  	BY4742	  	  	P-GSE39074-2	ArrayExpress	P-GSE39074-1	ArrayExpress	P-GSE39074-3	ArrayExpress	GSM955204 extract 1	Illumina Genome Analyzer II	other	transcriptomic	OTHER	total RNA	GSM955204	SRX157549	Illumina Genome Analyzer II (Saccharomyces cerevisiae)	sequencing assay	P-GSE39074-4	ArrayExpress	SRR518051	SRR518051	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR518/SRR518051/SRR518051.fastq.gz	GSM955204_TATLSeqFraction5LengthCalls.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-39074/E-GEOD-39074.processed.1.zip	RNA, polysome purified	  	  	BY4742	  	        
GSM955204 1	TATL-Seq, fraction 5	S288C_TATLSeq	S288C_TATLSeq5	Saccharomyces cerevisiae	EFO	http://purl.obolibrary.org/obo/NCBITaxon_4932	RNA, polysome purified	  	  	BY4742	  	  	P-GSE39074-2	ArrayExpress	P-GSE39074-1	ArrayExpress	P-GSE39074-3	ArrayExpress	GSM955204 extract 1	Illumina Genome Analyzer II	other	transcriptomic	OTHER	total RNA	GSM955204	SRX157549	Illumina Genome Analyzer II (Saccharomyces cerevisiae)	sequencing assay	P-GSE39074-4	ArrayExpress	SRR518051	SRR518051	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR518/SRR518051/SRR518051.fastq.gz	GSM955204_TATL-SeqFraction5.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-39074/E-GEOD-39074.processed.1.zip	RNA, polysome purified	  	  	BY4742	  	        
GSM955203 1	TATL-Seq, fraction 4	S288C_TATLSeq	S288C_TATLSeq4	Saccharomyces cerevisiae	EFO	http://purl.obolibrary.org/obo/NCBITaxon_4932	RNA, polysome purified	  	  	BY4742	  	  	P-GSE39074-2	ArrayExpress	P-GSE39074-1	ArrayExpress	P-GSE39074-3	ArrayExpress	GSM955203 extract 1	Illumina Genome Analyzer II	other	transcriptomic	OTHER	total RNA	GSM955203	SRX157548	Illumina Genome Analyzer II (Saccharomyces cerevisiae)	sequencing assay	P-GSE39074-4	ArrayExpress	SRR518050	SRR518050	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR518/SRR518050/SRR518050.fastq.gz	GSM955203_TATL-SeqFraction4.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-39074/E-GEOD-39074.processed.1.zip	RNA, polysome purified	  	  	BY4742	  	        
GSM955203 1	TATL-Seq, fraction 4	S288C_TATLSeq	S288C_TATLSeq4	Saccharomyces cerevisiae	EFO	http://purl.obolibrary.org/obo/NCBITaxon_4932	RNA, polysome purified	  	  	BY4742	  	  	P-GSE39074-2	ArrayExpress	P-GSE39074-1	ArrayExpress	P-GSE39074-3	ArrayExpress	GSM955203 extract 1	Illumina Genome Analyzer II	other	transcriptomic	OTHER	total RNA	GSM955203	SRX157548	Illumina Genome Analyzer II (Saccharomyces cerevisiae)	sequencing assay	P-GSE39074-4	ArrayExpress	SRR518050	SRR518050	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR518/SRR518050/SRR518050.fastq.gz	GSM955203_TATLSeqFraction4LengthCalls.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-39074/E-GEOD-39074.processed.1.zip	RNA, polysome purified	  	  	BY4742	  	        
GSM955202 1	TATL-Seq, fraction 3	S288C_TATLSeq	S288C_TATLSeq3	Saccharomyces cerevisiae	EFO	http://purl.obolibrary.org/obo/NCBITaxon_4932	RNA, polysome purified	  	  	BY4742	  	  	P-GSE39074-2	ArrayExpress	P-GSE39074-1	ArrayExpress	P-GSE39074-3	ArrayExpress	GSM955202 extract 1	Illumina Genome Analyzer II	other	transcriptomic	OTHER	total RNA	GSM955202	SRX157547	Illumina Genome Analyzer II (Saccharomyces cerevisiae)	sequencing assay	P-GSE39074-4	ArrayExpress	SRR518049	SRR518049	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR518/SRR518049/SRR518049.fastq.gz	GSM955202_TATL-SeqFraction3.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-39074/E-GEOD-39074.processed.1.zip	RNA, polysome purified	  	  	BY4742	  	        
GSM955202 1	TATL-Seq, fraction 3	S288C_TATLSeq	S288C_TATLSeq3	Saccharomyces cerevisiae	EFO	http://purl.obolibrary.org/obo/NCBITaxon_4932	RNA, polysome purified	  	  	BY4742	  	  	P-GSE39074-2	ArrayExpress	P-GSE39074-1	ArrayExpress	P-GSE39074-3	ArrayExpress	GSM955202 extract 1	Illumina Genome Analyzer II	other	transcriptomic	OTHER	total RNA	GSM955202	SRX157547	Illumina Genome Analyzer II (Saccharomyces cerevisiae)	sequencing assay	P-GSE39074-4	ArrayExpress	SRR518049	SRR518049	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR518/SRR518049/SRR518049.fastq.gz	GSM955202_TATLSeqFraction3LengthCalls.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-39074/E-GEOD-39074.processed.1.zip	RNA, polysome purified	  	  	BY4742	  	        
GSM955201 1	TATL-Seq, fraction 2	S288C_TATLSeq	S288C_TATLSeq2	Saccharomyces cerevisiae	EFO	http://purl.obolibrary.org/obo/NCBITaxon_4932	RNA, polysome purified	  	  	BY4742	  	  	P-GSE39074-2	ArrayExpress	P-GSE39074-1	ArrayExpress	P-GSE39074-3	ArrayExpress	GSM955201 extract 1	Illumina Genome Analyzer II	other	transcriptomic	OTHER	total RNA	GSM955201	SRX157546	Illumina Genome Analyzer II (Saccharomyces cerevisiae)	sequencing assay	P-GSE39074-4	ArrayExpress	SRR518048	SRR518048	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR518/SRR518048/SRR518048.fastq.gz	GSM955201_TATL-SeqFraction2.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-39074/E-GEOD-39074.processed.1.zip	RNA, polysome purified	  	  	BY4742	  	        
GSM955201 1	TATL-Seq, fraction 2	S288C_TATLSeq	S288C_TATLSeq2	Saccharomyces cerevisiae	EFO	http://purl.obolibrary.org/obo/NCBITaxon_4932	RNA, polysome purified	  	  	BY4742	  	  	P-GSE39074-2	ArrayExpress	P-GSE39074-1	ArrayExpress	P-GSE39074-3	ArrayExpress	GSM955201 extract 1	Illumina Genome Analyzer II	other	transcriptomic	OTHER	total RNA	GSM955201	SRX157546	Illumina Genome Analyzer II (Saccharomyces cerevisiae)	sequencing assay	P-GSE39074-4	ArrayExpress	SRR518048	SRR518048	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR518/SRR518048/SRR518048.fastq.gz	GSM955201_TATLSeqFraction2LengthCalls.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-39074/E-GEOD-39074.processed.1.zip	RNA, polysome purified	  	  	BY4742	  	        
GSM955200 1	TATL-Seq, fraction 1	S288C_TATLSeq	S288C_TATLSeq1	Saccharomyces cerevisiae	EFO	http://purl.obolibrary.org/obo/NCBITaxon_4932	RNA, polysome purified	  	  	BY4742	  	  	P-GSE39074-2	ArrayExpress	P-GSE39074-1	ArrayExpress	P-GSE39074-3	ArrayExpress	GSM955200 extract 1	Illumina Genome Analyzer II	other	transcriptomic	OTHER	total RNA	GSM955200	SRX157545	Illumina Genome Analyzer II (Saccharomyces cerevisiae)	sequencing assay	P-GSE39074-4	ArrayExpress	SRR518047	SRR518047	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR518/SRR518047/SRR518047.fastq.gz	GSM955200_TATL-SeqFraction1.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-39074/E-GEOD-39074.processed.1.zip	RNA, polysome purified	  	  	BY4742	  	        
GSM955200 1	TATL-Seq, fraction 1	S288C_TATLSeq	S288C_TATLSeq1	Saccharomyces cerevisiae	EFO	http://purl.obolibrary.org/obo/NCBITaxon_4932	RNA, polysome purified	  	  	BY4742	  	  	P-GSE39074-2	ArrayExpress	P-GSE39074-1	ArrayExpress	P-GSE39074-3	ArrayExpress	GSM955200 extract 1	Illumina Genome Analyzer II	other	transcriptomic	OTHER	total RNA	GSM955200	SRX157545	Illumina Genome Analyzer II (Saccharomyces cerevisiae)	sequencing assay	P-GSE39074-4	ArrayExpress	SRR518047	SRR518047	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR518/SRR518047/SRR518047.fastq.gz	GSM955200_TATLSeqFraction1LengthCalls.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-39074/E-GEOD-39074.processed.1.zip	RNA, polysome purified	  	  	BY4742	  	        
GSM955199 1	TL-Seq, -pyrophosphatase	Sigma_TLSeqControl	Sigma_TLSeqControl	Saccharomyces cerevisiae	EFO	http://purl.obolibrary.org/obo/NCBITaxon_4932	RNA	EFO	http://purl.obolibrary.org/obo/CHEBI_33697	Sigma 1278b	EFO	EFO_0004563	P-GSE39074-2	ArrayExpress	P-GSE39074-1	ArrayExpress	P-GSE39074-3	ArrayExpress	GSM955199 extract 1	Illumina Genome Analyzer II	other	transcriptomic	OTHER	total RNA	GSM955199	SRX157544	Illumina Genome Analyzer II (Saccharomyces cerevisiae)	sequencing assay	P-GSE39074-4	ArrayExpress	SRR518046	SRR518046	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR518/SRR518046/SRR518046.fastq.gz	GSM955199_TL-SeqMinusTAP.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-39074/E-GEOD-39074.processed.1.zip	RNA	EFO	http://purl.obolibrary.org/obo/CHEBI_33697	Sigma 1278b	EFO	EFO_0004563
GSM955199 1	TL-Seq, -pyrophosphatase	Sigma_TLSeqControl	Sigma_TLSeqControl	Saccharomyces cerevisiae	EFO	http://purl.obolibrary.org/obo/NCBITaxon_4932	RNA	EFO	http://purl.obolibrary.org/obo/CHEBI_33697	Sigma 1278b	EFO	EFO_0004563	P-GSE39074-2	ArrayExpress	P-GSE39074-1	ArrayExpress	P-GSE39074-3	ArrayExpress	GSM955199 extract 1	Illumina Genome Analyzer II	other	transcriptomic	OTHER	total RNA	GSM955199	SRX157544	Illumina Genome Analyzer II (Saccharomyces cerevisiae)	sequencing assay	P-GSE39074-4	ArrayExpress	SRR518046	SRR518046	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR518/SRR518046/SRR518046.fastq.gz	GSM955199_TLSeq_withoutPyroLengthCalls.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-39074/E-GEOD-39074.processed.1.zip	RNA	EFO	http://purl.obolibrary.org/obo/CHEBI_33697	Sigma 1278b	EFO	EFO_0004563
GSM955198 1	TL-Seq, +pyrosphosphatase	Sigma_TLSeq	Sigma_TLSeq	Saccharomyces cerevisiae	EFO	http://purl.obolibrary.org/obo/NCBITaxon_4932	RNA	EFO	http://purl.obolibrary.org/obo/CHEBI_33697	Sigma 1278b	EFO	EFO_0004563	P-GSE39074-2	ArrayExpress	P-GSE39074-1	ArrayExpress	P-GSE39074-3	ArrayExpress	GSM955198 extract 1	Illumina Genome Analyzer II	other	transcriptomic	OTHER	total RNA	GSM955198	SRX157543	Illumina Genome Analyzer II (Saccharomyces cerevisiae)	sequencing assay	P-GSE39074-4	ArrayExpress	SRR518045	SRR518045	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR518/SRR518045/SRR518045.fastq.gz	GSM955198_TLSeq_withPyroLengthCalls.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-39074/E-GEOD-39074.processed.1.zip	RNA	EFO	http://purl.obolibrary.org/obo/CHEBI_33697	Sigma 1278b	EFO	EFO_0004563
GSM955198 1	TL-Seq, +pyrosphosphatase	Sigma_TLSeq	Sigma_TLSeq	Saccharomyces cerevisiae	EFO	http://purl.obolibrary.org/obo/NCBITaxon_4932	RNA	EFO	http://purl.obolibrary.org/obo/CHEBI_33697	Sigma 1278b	EFO	EFO_0004563	P-GSE39074-2	ArrayExpress	P-GSE39074-1	ArrayExpress	P-GSE39074-3	ArrayExpress	GSM955198 extract 1	Illumina Genome Analyzer II	other	transcriptomic	OTHER	total RNA	GSM955198	SRX157543	Illumina Genome Analyzer II (Saccharomyces cerevisiae)	sequencing assay	P-GSE39074-4	ArrayExpress	SRR518045	SRR518045	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR518/SRR518045/SRR518045.fastq.gz	GSM955198_TL-SeqPlusTAP.wig	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-39074/E-GEOD-39074.processed.1.zip	RNA	EFO	http://purl.obolibrary.org/obo/CHEBI_33697	Sigma 1278b	EFO	EFO_0004563