Source Name Comment [Sample_description] Comment [Sample_source_name] Comment [Sample_title] Characteristics [cell line] Characteristics [chip antibody] Characteristics [condition] Characteristics [organism] Term Source REF Term Accession Number Characteristics [strain or line] Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Extract Name Material Type Protocol REF Term Source REF Labeled Extract Name Label Protocol REF Term Source REF Assay Name Array Design REF Term Source REF Technology Type Protocol REF Term Source REF Array Data File Comment [ArrayExpress FTP file] Protocol REF Term Source REF Normalization Name Derived Array Data File Comment [Derived ArrayExpress FTP file] FactorValue [CELL LINE] FactorValue [CONDITION] FactorValue [TIME] FactorValue [TREATMENT] Term Source REF Term Accession Number GSM703185 1 On MEF feeders, with FGF4/heparin/Activin A ZHBTc4 ES cells, +Tet, Day 4 Oct3/4KO Day4 biological rep3 ZHBTc4 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 129/Ola P-GSE28455-9 ArrayExpress P-GSE28455-8 ArrayExpress P-GSE28455-4 ArrayExpress GSM703185 extract 1 total RNA P-GSE28455-5 ArrayExpress GSM703185 LE 1 biotin P-GSE28455-6 ArrayExpress GSM703185 A-AFFY-98 ArrayExpress array assay P-GSE28455-7 ArrayExpress GSM703185_Oct4KO_Day4_rep3.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.raw.1.zip P-GSE28455-1 ArrayExpress GSM703185_sample_table.txt norm GSM703185_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.processed.1.zip ZHBTc4 not specified 4 days Tet GSM703184 1 On MEF feeders, with FGF4/heparin/Activin A ZHBTc4 ES cells, +Tet, Day 4 Oct3/4KO Day4 biological rep2 ZHBTc4 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 129/Ola P-GSE28455-9 ArrayExpress P-GSE28455-8 ArrayExpress P-GSE28455-4 ArrayExpress GSM703184 extract 1 total RNA P-GSE28455-5 ArrayExpress GSM703184 LE 1 biotin P-GSE28455-6 ArrayExpress GSM703184 A-AFFY-98 ArrayExpress array assay P-GSE28455-7 ArrayExpress GSM703184_Oct4KO_Day4_rep2.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.raw.1.zip P-GSE28455-1 ArrayExpress GSM703184_sample_table.txt norm GSM703184_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.processed.1.zip ZHBTc4 not specified 4 days Tet GSM703183 1 On MEF feeders, with FGF4/heparin/Activin A ZHBTc4 ES cells, +Tet, Day 4 Oct3/4KO Day4 biological rep1 ZHBTc4 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 129/Ola P-GSE28455-9 ArrayExpress P-GSE28455-8 ArrayExpress P-GSE28455-4 ArrayExpress GSM703183 extract 1 total RNA P-GSE28455-5 ArrayExpress GSM703183 LE 1 biotin P-GSE28455-6 ArrayExpress GSM703183 A-AFFY-98 ArrayExpress array assay P-GSE28455-7 ArrayExpress GSM703183_Oct4KO_Day4_rep1.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.raw.1.zip P-GSE28455-1 ArrayExpress GSM703183_sample_table.txt norm GSM703183_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.processed.1.zip ZHBTc4 not specified 4 days Tet GSM703182 1 On MEF feeders, with FGF4/heparin/Activin A ZHBTc4 ES cells, +Tet, Day 3 Oct3/4KO Day3 biological rep3 ZHBTc4 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 129/Ola P-GSE28455-9 ArrayExpress P-GSE28455-8 ArrayExpress P-GSE28455-4 ArrayExpress GSM703182 extract 1 total RNA P-GSE28455-5 ArrayExpress GSM703182 LE 1 biotin P-GSE28455-6 ArrayExpress GSM703182 A-AFFY-98 ArrayExpress array assay P-GSE28455-7 ArrayExpress GSM703182_Oct4KO_Day3_rep3.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.raw.1.zip P-GSE28455-1 ArrayExpress GSM703182_sample_table.txt norm GSM703182_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.processed.1.zip ZHBTc4 not specified 3 days Tet GSM703181 1 On MEF feeders, with FGF4/heparin/Activin A ZHBTc4 ES cells, +Tet, Day 3 Oct3/4KO Day3 biological rep2 ZHBTc4 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 129/Ola P-GSE28455-9 ArrayExpress P-GSE28455-8 ArrayExpress P-GSE28455-4 ArrayExpress GSM703181 extract 1 total RNA P-GSE28455-5 ArrayExpress GSM703181 LE 1 biotin P-GSE28455-6 ArrayExpress GSM703181 A-AFFY-98 ArrayExpress array assay P-GSE28455-7 ArrayExpress GSM703181_Oct4KO_Day3_rep2.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.raw.1.zip P-GSE28455-1 ArrayExpress GSM703181_sample_table.txt norm GSM703181_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.processed.1.zip ZHBTc4 not specified 3 days Tet GSM703180 1 On MEF feeders, with FGF4/heparin/Activin A ZHBTc4 ES cells, +Tet, Day 3 Oct3/4KO Day3 biological rep1 ZHBTc4 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 129/Ola P-GSE28455-9 ArrayExpress P-GSE28455-8 ArrayExpress P-GSE28455-4 ArrayExpress GSM703180 extract 1 total RNA P-GSE28455-5 ArrayExpress GSM703180 LE 1 biotin P-GSE28455-6 ArrayExpress GSM703180 A-AFFY-98 ArrayExpress array assay P-GSE28455-7 ArrayExpress GSM703180_Oct4KO_Day3_rep1.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.raw.1.zip P-GSE28455-1 ArrayExpress GSM703180_sample_table.txt norm GSM703180_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.processed.1.zip ZHBTc4 not specified 3 days Tet GSM703179 1 On MEF feeders, with FGF4/heparin/Activin A ZHBTc4 ES cells, +Tet, Day 2 Oct3/4KO Day2 biological rep3 ZHBTc4 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 129/Ola P-GSE28455-9 ArrayExpress P-GSE28455-8 ArrayExpress P-GSE28455-4 ArrayExpress GSM703179 extract 1 total RNA P-GSE28455-5 ArrayExpress GSM703179 LE 1 biotin P-GSE28455-6 ArrayExpress GSM703179 A-AFFY-98 ArrayExpress array assay P-GSE28455-7 ArrayExpress GSM703179_Oct4KO_Day2_rep3.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.raw.1.zip P-GSE28455-1 ArrayExpress GSM703179_sample_table.txt norm GSM703179_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.processed.1.zip ZHBTc4 not specified 2 days Tet GSM703178 1 On MEF feeders, with FGF4/heparin/Activin A ZHBTc4 ES cells, +Tet, Day 2 Oct3/4KO Day2 biological rep2 ZHBTc4 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 129/Ola P-GSE28455-9 ArrayExpress P-GSE28455-8 ArrayExpress P-GSE28455-4 ArrayExpress GSM703178 extract 1 total RNA P-GSE28455-5 ArrayExpress GSM703178 LE 1 biotin P-GSE28455-6 ArrayExpress GSM703178 A-AFFY-98 ArrayExpress array assay P-GSE28455-7 ArrayExpress GSM703178_Oct4KO_Day2_rep2.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.raw.1.zip P-GSE28455-1 ArrayExpress GSM703178_sample_table.txt norm GSM703178_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.processed.1.zip ZHBTc4 not specified 2 days Tet GSM703177 1 On MEF feeders, with FGF4/heparin/Activin A ZHBTc4 ES cells, +Tet, Day 2 Oct3/4KO Day2 biological rep1 ZHBTc4 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 129/Ola P-GSE28455-9 ArrayExpress P-GSE28455-8 ArrayExpress P-GSE28455-4 ArrayExpress GSM703177 extract 1 total RNA P-GSE28455-5 ArrayExpress GSM703177 LE 1 biotin P-GSE28455-6 ArrayExpress GSM703177 A-AFFY-98 ArrayExpress array assay P-GSE28455-7 ArrayExpress GSM703177_Oct4KO_Day2_rep1.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.raw.2.zip P-GSE28455-1 ArrayExpress GSM703177_sample_table.txt norm GSM703177_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.processed.1.zip ZHBTc4 not specified 2 days Tet GSM703176 1 On MEF feeders, with FGF4/heparin/Activin A ZHBTc4 ES cells, +Tet, Day 1 Oct3/4KO Day1 biological rep3 ZHBTc4 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 129/Ola P-GSE28455-9 ArrayExpress P-GSE28455-8 ArrayExpress P-GSE28455-4 ArrayExpress GSM703176 extract 1 total RNA P-GSE28455-5 ArrayExpress GSM703176 LE 1 biotin P-GSE28455-6 ArrayExpress GSM703176 A-AFFY-98 ArrayExpress array assay P-GSE28455-7 ArrayExpress GSM703176_Oct4KO_Day1_rep3.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.raw.2.zip P-GSE28455-1 ArrayExpress GSM703176_sample_table.txt norm GSM703176_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.processed.1.zip ZHBTc4 not specified 1 day Tet GSM703175 1 On MEF feeders, with FGF4/heparin/Activin A ZHBTc4 ES cells, +Tet, Day 1 Oct3/4KO Day1 biological rep2 ZHBTc4 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 129/Ola P-GSE28455-9 ArrayExpress P-GSE28455-8 ArrayExpress P-GSE28455-4 ArrayExpress GSM703175 extract 1 total RNA P-GSE28455-5 ArrayExpress GSM703175 LE 1 biotin P-GSE28455-6 ArrayExpress GSM703175 A-AFFY-98 ArrayExpress array assay P-GSE28455-7 ArrayExpress GSM703175_Oct4KO_Day1_rep2.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.raw.2.zip P-GSE28455-1 ArrayExpress GSM703175_sample_table.txt norm GSM703175_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.processed.1.zip ZHBTc4 not specified 1 day Tet GSM703174 1 On MEF feeders, with FGF4/heparin/Activin A ZHBTc4 ES cells, +Tet, Day 1 Oct3/4KO Day1 biological rep1 ZHBTc4 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 129/Ola P-GSE28455-9 ArrayExpress P-GSE28455-8 ArrayExpress P-GSE28455-4 ArrayExpress GSM703174 extract 1 total RNA P-GSE28455-5 ArrayExpress GSM703174 LE 1 biotin P-GSE28455-6 ArrayExpress GSM703174 A-AFFY-98 ArrayExpress array assay P-GSE28455-7 ArrayExpress GSM703174_Oct4KO_Day1_rep1.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.raw.2.zip P-GSE28455-1 ArrayExpress GSM703174_sample_table.txt norm GSM703174_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.processed.1.zip ZHBTc4 not specified 1 day Tet GSM703173 1 On MEF feeders ZHBTc4 ES cells, untreated Oct3/4KO Day0 biological rep3 ZHBTc4 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 129/Ola P-GSE28455-9 ArrayExpress P-GSE28455-8 ArrayExpress P-GSE28455-4 ArrayExpress GSM703173 extract 1 total RNA P-GSE28455-5 ArrayExpress GSM703173 LE 1 biotin P-GSE28455-6 ArrayExpress GSM703173 A-AFFY-98 ArrayExpress array assay P-GSE28455-7 ArrayExpress GSM703173_Oct4KO_Day0_rep3.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.raw.2.zip P-GSE28455-1 ArrayExpress GSM703173_sample_table.txt norm GSM703173_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.processed.1.zip ZHBTc4 not specified 0 day control EFO EFO_0001461 GSM703172 1 On MEF feeders ZHBTc4 ES cells, untreated Oct3/4KO Day0 biological rep2 ZHBTc4 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 129/Ola P-GSE28455-9 ArrayExpress P-GSE28455-8 ArrayExpress P-GSE28455-4 ArrayExpress GSM703172 extract 1 total RNA P-GSE28455-5 ArrayExpress GSM703172 LE 1 biotin P-GSE28455-6 ArrayExpress GSM703172 A-AFFY-98 ArrayExpress array assay P-GSE28455-7 ArrayExpress GSM703172_Oct4KO_Day0_rep2.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.raw.2.zip P-GSE28455-1 ArrayExpress GSM703172_sample_table.txt norm GSM703172_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.processed.1.zip ZHBTc4 not specified 0 day control EFO EFO_0001461 GSM703171 1 On MEF feeders ZHBTc4 ES cells, untreated Oct3/4KO Day0 biological rep1 ZHBTc4 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 129/Ola P-GSE28455-9 ArrayExpress P-GSE28455-8 ArrayExpress P-GSE28455-4 ArrayExpress GSM703171 extract 1 total RNA P-GSE28455-5 ArrayExpress GSM703171 LE 1 biotin P-GSE28455-6 ArrayExpress GSM703171 A-AFFY-98 ArrayExpress array assay P-GSE28455-7 ArrayExpress GSM703171_Oct4KO_Day0_rep1.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.raw.2.zip P-GSE28455-1 ArrayExpress GSM703171_sample_table.txt norm GSM703171_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.processed.1.zip ZHBTc4 not specified 0 day control EFO EFO_0001461 GSM703170 1 On MEF feeders, with FGF4/heparin/Activin A 22CEROH2-TSC1 TS cells, +Tet, Day 4 Sox2KO TSC Day4 biological rep3 22CEROH2-TSC1 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 129/Ola P-GSE28455-3 ArrayExpress P-GSE28455-2 ArrayExpress P-GSE28455-4 ArrayExpress GSM703170 extract 1 total RNA P-GSE28455-5 ArrayExpress GSM703170 LE 1 biotin P-GSE28455-6 ArrayExpress GSM703170 A-AFFY-98 ArrayExpress array assay P-GSE28455-7 ArrayExpress GSM703170_Sox2KO_TSC_Day4_rep3.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.raw.2.zip P-GSE28455-1 ArrayExpress GSM703170_sample_table.txt norm GSM703170_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.processed.1.zip 22CEROH2-TSC1 not specified 4 days Tet GSM703169 1 On MEF feeders, with FGF4/heparin/Activin A 22CEROH2-TSC1 TS cells, +Tet, Day 4 Sox2KO TSC Day4 biological rep2 22CEROH2-TSC1 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 129/Ola P-GSE28455-3 ArrayExpress P-GSE28455-2 ArrayExpress P-GSE28455-4 ArrayExpress GSM703169 extract 1 total RNA P-GSE28455-5 ArrayExpress GSM703169 LE 1 biotin P-GSE28455-6 ArrayExpress GSM703169 A-AFFY-98 ArrayExpress array assay P-GSE28455-7 ArrayExpress GSM703169_Sox2KO_TSC_Day4_rep2.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.raw.2.zip P-GSE28455-1 ArrayExpress GSM703169_sample_table.txt norm GSM703169_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.processed.1.zip 22CEROH2-TSC1 not specified 4 days Tet GSM703168 1 On MEF feeders, with FGF4/heparin/Activin A 22CEROH2-TSC1 TS cells, +Tet, Day 4 Sox2KO TSC Day4 biological rep1 22CEROH2-TSC1 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 129/Ola P-GSE28455-3 ArrayExpress P-GSE28455-2 ArrayExpress P-GSE28455-4 ArrayExpress GSM703168 extract 1 total RNA P-GSE28455-5 ArrayExpress GSM703168 LE 1 biotin P-GSE28455-6 ArrayExpress GSM703168 A-AFFY-98 ArrayExpress array assay P-GSE28455-7 ArrayExpress GSM703168_Sox2KO_TSC_Day4_rep1.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.raw.3.zip P-GSE28455-1 ArrayExpress GSM703168_sample_table.txt norm GSM703168_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.processed.1.zip 22CEROH2-TSC1 not specified 4 days Tet GSM703167 1 On MEF feeders, with FGF4/heparin/Activin A 22CEROH2-TSC1 TS cells, untreated Sox2KO TSC Control biological rep3 22CEROH2-TSC1 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 129/Ola P-GSE28455-3 ArrayExpress P-GSE28455-2 ArrayExpress P-GSE28455-4 ArrayExpress GSM703167 extract 1 total RNA P-GSE28455-5 ArrayExpress GSM703167 LE 1 biotin P-GSE28455-6 ArrayExpress GSM703167 A-AFFY-98 ArrayExpress array assay P-GSE28455-7 ArrayExpress GSM703167_Sox2KO_TSC_Ctrl_rep3.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.raw.3.zip P-GSE28455-1 ArrayExpress GSM703167_sample_table.txt norm GSM703167_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.processed.1.zip 22CEROH2-TSC1 not specified not specified control EFO EFO_0001461 GSM703166 1 On MEF feeders, with FGF4/heparin/Activin A 22CEROH2-TSC1 TS cells, untreated Sox2KO TSC Control biological rep2 22CEROH2-TSC1 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 129/Ola P-GSE28455-3 ArrayExpress P-GSE28455-2 ArrayExpress P-GSE28455-4 ArrayExpress GSM703166 extract 1 total RNA P-GSE28455-5 ArrayExpress GSM703166 LE 1 biotin P-GSE28455-6 ArrayExpress GSM703166 A-AFFY-98 ArrayExpress array assay P-GSE28455-7 ArrayExpress GSM703166_Sox2KO_TSC_Ctrl_rep2.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.raw.3.zip P-GSE28455-1 ArrayExpress GSM703166_sample_table.txt norm GSM703166_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.processed.1.zip 22CEROH2-TSC1 not specified not specified control EFO EFO_0001461 GSM703165 1 On MEF feeders, with FGF4/heparin/Activin A 22CEROH2-TSC1 TS cells, untreated Sox2KO TSC Control biological rep1 22CEROH2-TSC1 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 129/Ola P-GSE28455-3 ArrayExpress P-GSE28455-2 ArrayExpress P-GSE28455-4 ArrayExpress GSM703165 extract 1 total RNA P-GSE28455-5 ArrayExpress GSM703165 LE 1 biotin P-GSE28455-6 ArrayExpress GSM703165 A-AFFY-98 ArrayExpress array assay P-GSE28455-7 ArrayExpress GSM703165_Sox2KO_TSC_Ctrl_rep1.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.raw.3.zip P-GSE28455-1 ArrayExpress GSM703165_sample_table.txt norm GSM703165_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.processed.1.zip 22CEROH2-TSC1 not specified not specified control EFO EFO_0001461 GSM703164 1 On MEF feeders 2TS22C ES cells, +Tet, Day 4 Sox2KO ESC Day4 biological rep3 2TS22C Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 129/Ola P-GSE28455-3 ArrayExpress P-GSE28455-2 ArrayExpress P-GSE28455-4 ArrayExpress GSM703164 extract 1 total RNA P-GSE28455-5 ArrayExpress GSM703164 LE 1 biotin P-GSE28455-6 ArrayExpress GSM703164 A-AFFY-98 ArrayExpress array assay P-GSE28455-7 ArrayExpress GSM703164_Sox2KO_ESC_Day4_rep3.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.raw.3.zip P-GSE28455-1 ArrayExpress GSM703164_sample_table.txt norm GSM703164_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.processed.1.zip 2TS22C not specified 4 days Tet GSM703163 1 On MEF feeders 2TS22C ES cells, +Tet, Day 4 Sox2KO ESC Day4 biological rep2 2TS22C Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 129/Ola P-GSE28455-3 ArrayExpress P-GSE28455-2 ArrayExpress P-GSE28455-4 ArrayExpress GSM703163 extract 1 total RNA P-GSE28455-5 ArrayExpress GSM703163 LE 1 biotin P-GSE28455-6 ArrayExpress GSM703163 A-AFFY-98 ArrayExpress array assay P-GSE28455-7 ArrayExpress GSM703163_Sox2KO_ESC_Day4_rep2.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.raw.3.zip P-GSE28455-1 ArrayExpress GSM703163_sample_table.txt norm GSM703163_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.processed.1.zip 2TS22C not specified 4 days Tet GSM703162 1 On MEF feeders 2TS22C ES cells, +Tet, Day 4 Sox2KO ESC Day4 biological rep1 2TS22C Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 129/Ola P-GSE28455-3 ArrayExpress P-GSE28455-2 ArrayExpress P-GSE28455-4 ArrayExpress GSM703162 extract 1 total RNA P-GSE28455-5 ArrayExpress GSM703162 LE 1 biotin P-GSE28455-6 ArrayExpress GSM703162 A-AFFY-98 ArrayExpress array assay P-GSE28455-7 ArrayExpress GSM703162_Sox2KO_ESC_Day4_rep1.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.raw.3.zip P-GSE28455-1 ArrayExpress GSM703162_sample_table.txt norm GSM703162_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.processed.1.zip 2TS22C not specified 4 days Tet GSM703161 1 On MEF feeders 2TS22C ES cells, untreated Sox2KO ESC Control biological rep3 2TS22C Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 129/Ola P-GSE28455-3 ArrayExpress P-GSE28455-2 ArrayExpress P-GSE28455-4 ArrayExpress GSM703161 extract 1 total RNA P-GSE28455-5 ArrayExpress GSM703161 LE 1 biotin P-GSE28455-6 ArrayExpress GSM703161 A-AFFY-98 ArrayExpress array assay P-GSE28455-7 ArrayExpress GSM703161_Sox2KO_ESC_Ctrl_rep3.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.raw.3.zip P-GSE28455-1 ArrayExpress GSM703161_sample_table.txt norm GSM703161_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.processed.1.zip 2TS22C not specified not specified control EFO EFO_0001461 GSM703160 1 On MEF feeders 2TS22C ES cells, untreated Sox2KO ESC Control biological rep2 2TS22C Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 129/Ola P-GSE28455-3 ArrayExpress P-GSE28455-2 ArrayExpress P-GSE28455-4 ArrayExpress GSM703160 extract 1 total RNA P-GSE28455-5 ArrayExpress GSM703160 LE 1 biotin P-GSE28455-6 ArrayExpress GSM703160 A-AFFY-98 ArrayExpress array assay P-GSE28455-7 ArrayExpress GSM703160_Sox2KO_ESC_Ctrl_rep2.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.raw.3.zip P-GSE28455-1 ArrayExpress GSM703160_sample_table.txt norm GSM703160_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.processed.1.zip 2TS22C not specified not specified control EFO EFO_0001461 GSM703159 1 On MEF feeders 2TS22C ES cells, untreated Sox2KO ESC Control biological rep1 2TS22C Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 129/Ola P-GSE28455-3 ArrayExpress P-GSE28455-2 ArrayExpress P-GSE28455-4 ArrayExpress GSM703159 extract 1 total RNA P-GSE28455-5 ArrayExpress GSM703159 LE 1 biotin P-GSE28455-6 ArrayExpress GSM703159 A-AFFY-98 ArrayExpress array assay P-GSE28455-7 ArrayExpress GSM703159_Sox2KO_ESC_Ctrl_rep1.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.raw.4.zip P-GSE28455-1 ArrayExpress GSM703159_sample_table.txt norm GSM703159_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-28455/E-GEOD-28455.processed.1.zip 2TS22C not specified not specified control EFO EFO_0001461