Source Name Characteristics [Organism] Term Source REF Term Accession Number Description Comment [Sample_characteristics] Comment [Sample_source_name] Protocol REF Protocol REF Sample Name Protocol REF Extract Name Material Type Protocol REF Labeled Extract Name Label Material Type Hybridization Name Array Design REF Protocol REF Scan Name Array Data File Comment [ArrayExpress FTP file] Derived Array Data Matrix File Comment [Derived ArrayExpress FTP file] GSE13395GSM338260 Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 Macrophages 4 days HIV-1 infected: none. Primary human monocyte-derived macrophages Primary human monocyte-derived macrophages Macrophages 4 days HIV-1 infected P-G13395-1 P-G13395-2 GSE13395GSM338260 sample P-G13395-4 GSE13395GSM338260 extract total_RNA P-G13395-3 GSE13395GSM338260 LE biotin biotin synthetic_RNA Macrophage Infected Day4 Rep2 A-AFFY-1 P-AFFY-6 GSM338260.cel GSM338260.cel ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-13395/E-GEOD-13395.raw.1.zip E-GEOD-13395-processed-data-1712484340.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-13395/E-GEOD-13395.processed.1.zip GSE13395GSM338271 Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 Macrophages 2 days mock infected: none. Primary human monocyte-derived macrophages Primary human monocyte-derived macrophages Macrophages 2 days mock infected P-G13395-1 P-G13395-2 GSE13395GSM338271 sample P-G13395-4 GSE13395GSM338271 extract total_RNA P-G13395-3 GSE13395GSM338271 LE biotin biotin synthetic_RNA Macrophage Mock Day2 Rep4 A-AFFY-1 P-AFFY-6 GSM338271.cel GSM338271.cel ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-13395/E-GEOD-13395.raw.1.zip E-GEOD-13395-processed-data-1712484340.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-13395/E-GEOD-13395.processed.1.zip GSE13395GSM338263 Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 Macrophages 7 days mock infected: none. Primary human monocyte-derived macrophages Primary human monocyte-derived macrophages Macrophages 7 days mock infected P-G13395-1 P-G13395-2 GSE13395GSM338263 sample P-G13395-4 GSE13395GSM338263 extract total_RNA P-G13395-3 GSE13395GSM338263 LE biotin biotin synthetic_RNA Macrophage Mock Day7 Rep2 A-AFFY-1 P-AFFY-6 GSM338263.cel GSM338263.cel ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-13395/E-GEOD-13395.raw.1.zip E-GEOD-13395-processed-data-1712484340.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-13395/E-GEOD-13395.processed.1.zip GSE13395GSM338259 Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 Macrophages 7 days mock infected: none. Primary human monocyte-derived macrophages Primary human monocyte-derived macrophages Macrophages 7 days mock infected P-G13395-1 P-G13395-2 GSE13395GSM338259 sample P-G13395-4 GSE13395GSM338259 extract total_RNA P-G13395-3 GSE13395GSM338259 LE biotin biotin synthetic_RNA Macrophage Mock Day7 Rep1 A-AFFY-1 P-AFFY-6 GSM338259.cel GSM338259.cel ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-13395/E-GEOD-13395.raw.1.zip E-GEOD-13395-processed-data-1712484340.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-13395/E-GEOD-13395.processed.1.zip GSE13395GSM338261 Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 Macrophages 7 days HIV-1 infected: none. Primary human monocyte-derived macrophages Primary human monocyte-derived macrophages Macrophages 7 days HIV-1 infected P-G13395-1 P-G13395-2 GSE13395GSM338261 sample P-G13395-4 GSE13395GSM338261 extract total_RNA P-G13395-3 GSE13395GSM338261 LE biotin biotin synthetic_RNA Macrophage Infected Day7 Rep2 A-AFFY-1 P-AFFY-6 GSM338261.cel GSM338261.cel ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-13395/E-GEOD-13395.raw.1.zip E-GEOD-13395-processed-data-1712484340.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-13395/E-GEOD-13395.processed.1.zip GSE13395GSM338270 Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 Macrophages 2 days HIV-1 infected: none. Primary human monocyte-derived macrophages Primary human monocyte-derived macrophages Macrophages 2 days HIV-1 infected P-G13395-1 P-G13395-2 GSE13395GSM338270 sample P-G13395-4 GSE13395GSM338270 extract total_RNA P-G13395-3 GSE13395GSM338270 LE biotin biotin synthetic_RNA Macrophage Infected Day2 Rep4 A-AFFY-1 P-AFFY-6 GSM338270.cel GSM338270.cel ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-13395/E-GEOD-13395.raw.1.zip E-GEOD-13395-processed-data-1712484340.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-13395/E-GEOD-13395.processed.1.zip GSE13395GSM338265 Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 Macrophages 4 days HIV-1 infected: none. Primary human monocyte-derived macrophages Primary human monocyte-derived macrophages Macrophages 4 days HIV-1 infected P-G13395-1 P-G13395-2 GSE13395GSM338265 sample P-G13395-4 GSE13395GSM338265 extract total_RNA P-G13395-3 GSE13395GSM338265 LE biotin biotin synthetic_RNA Macrophage Infected Day4 Rep3 A-AFFY-1 P-AFFY-6 GSM338265.cel GSM338265.cel ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-13395/E-GEOD-13395.raw.1.zip E-GEOD-13395-processed-data-1712484340.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-13395/E-GEOD-13395.processed.1.zip GSE13395GSM338267 Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 Macrophages 2 days mock infected: none. Primary human monocyte-derived macrophages Primary human monocyte-derived macrophages Macrophages 2 days mock infected P-G13395-1 P-G13395-2 GSE13395GSM338267 sample P-G13395-4 GSE13395GSM338267 extract total_RNA P-G13395-3 GSE13395GSM338267 LE biotin biotin synthetic_RNA Macrophage Mock Day2 Rep3 A-AFFY-1 P-AFFY-6 GSM338267.cel GSM338267.cel ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-13395/E-GEOD-13395.raw.1.zip E-GEOD-13395-processed-data-1712484340.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-13395/E-GEOD-13395.processed.1.zip GSE13395GSM338258 Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 Macrophages 4 days mock infected: none. Primary human monocyte-derived macrophages Primary human monocyte-derived macrophages Macrophages 4 days mock infected P-G13395-1 P-G13395-2 GSE13395GSM338258 sample P-G13395-4 GSE13395GSM338258 extract total_RNA P-G13395-3 GSE13395GSM338258 LE biotin biotin synthetic_RNA Macrophage Mock Day4 Rep1 A-AFFY-1 P-AFFY-6 GSM338258.cel GSM338258.cel ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-13395/E-GEOD-13395.raw.1.zip E-GEOD-13395-processed-data-1712484340.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-13395/E-GEOD-13395.processed.1.zip GSE13395GSM338257 Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 Macrophages 7 days HIV-1 infected: none. Primary human monocyte-derived macrophages Primary human monocyte-derived macrophages Macrophages 7 days HIV-1 infected P-G13395-1 P-G13395-2 GSE13395GSM338257 sample P-G13395-4 GSE13395GSM338257 extract total_RNA P-G13395-3 GSE13395GSM338257 LE biotin biotin synthetic_RNA Macrophage Infected Day7 Rep1 A-AFFY-1 P-AFFY-6 GSM338257.cel GSM338257.cel ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-13395/E-GEOD-13395.raw.1.zip E-GEOD-13395-processed-data-1712484340.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-13395/E-GEOD-13395.processed.1.zip GSE13395GSM338268 Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 Macrophages 4 days mock infected: none. Primary human monocyte-derived macrophages Primary human monocyte-derived macrophages Macrophages 4 days mock infected P-G13395-1 P-G13395-2 GSE13395GSM338268 sample P-G13395-4 GSE13395GSM338268 extract total_RNA P-G13395-3 GSE13395GSM338268 LE biotin biotin synthetic_RNA Macrophage Mock Day4 Rep3 A-AFFY-1 P-AFFY-6 GSM338268.cel GSM338268.cel ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-13395/E-GEOD-13395.raw.1.zip E-GEOD-13395-processed-data-1712484340.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-13395/E-GEOD-13395.processed.1.zip GSE13395GSM338262 Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 Macrophages 4 days mock infected: none. Primary human monocyte-derived macrophages Primary human monocyte-derived macrophages Macrophages 4 days mock infected P-G13395-1 P-G13395-2 GSE13395GSM338262 sample P-G13395-4 GSE13395GSM338262 extract total_RNA P-G13395-3 GSE13395GSM338262 LE biotin biotin synthetic_RNA Macrophage Mock Day4 Rep2 A-AFFY-1 P-AFFY-6 GSM338262.cel GSM338262.cel ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-13395/E-GEOD-13395.raw.1.zip E-GEOD-13395-processed-data-1712484340.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-13395/E-GEOD-13395.processed.1.zip GSE13395GSM338266 Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 Macrophages 7 days HIV-1 infected: none. Primary human monocyte-derived macrophages Primary human monocyte-derived macrophages Macrophages 7 days HIV-1 infected P-G13395-1 P-G13395-2 GSE13395GSM338266 sample P-G13395-4 GSE13395GSM338266 extract total_RNA P-G13395-3 GSE13395GSM338266 LE biotin biotin synthetic_RNA Macrophage Infected Day7 Rep3 A-AFFY-1 P-AFFY-6 GSM338266.cel GSM338266.cel ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-13395/E-GEOD-13395.raw.1.zip E-GEOD-13395-processed-data-1712484340.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-13395/E-GEOD-13395.processed.1.zip GSE13395GSM338264 Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 Macrophages 2 days HIV-1 infected: none. Primary human monocyte-derived macrophages Primary human monocyte-derived macrophages Macrophages 2 days HIV-1 infected P-G13395-1 P-G13395-2 GSE13395GSM338264 sample P-G13395-4 GSE13395GSM338264 extract total_RNA P-G13395-3 GSE13395GSM338264 LE biotin biotin synthetic_RNA Macrophage Infected Day2 Rep3 A-AFFY-1 P-AFFY-6 GSM338264.cel GSM338264.cel ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-13395/E-GEOD-13395.raw.1.zip E-GEOD-13395-processed-data-1712484340.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-13395/E-GEOD-13395.processed.1.zip GSE13395GSM338269 Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 Macrophages 7 days mock infected: none. Primary human monocyte-derived macrophages Primary human monocyte-derived macrophages Macrophages 7 days mock infected P-G13395-1 P-G13395-2 GSE13395GSM338269 sample P-G13395-4 GSE13395GSM338269 extract total_RNA P-G13395-3 GSE13395GSM338269 LE biotin biotin synthetic_RNA Macrophage Mock Day7 Rep3 A-AFFY-1 P-AFFY-6 GSM338269.cel GSM338269.cel ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-13395/E-GEOD-13395.raw.1.zip E-GEOD-13395-processed-data-1712484340.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-13395/E-GEOD-13395.processed.1.zip GSE13395GSM338256 Homo sapiens EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606 Macrophages 4 days HIV-1 infected: none. Primary human monocyte-derived macrophages Primary human monocyte-derived macrophages Macrophages 4 days HIV-1 infected P-G13395-1 P-G13395-2 GSE13395GSM338256 sample P-G13395-4 GSE13395GSM338256 extract total_RNA P-G13395-3 GSE13395GSM338256 LE biotin biotin synthetic_RNA Macrophage Infected Day4 Rep1 A-AFFY-1 P-AFFY-6 GSM338256.cel GSM338256.cel ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-13395/E-GEOD-13395.raw.1.zip E-GEOD-13395-processed-data-1712484340.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-13395/E-GEOD-13395.processed.1.zip