Source Name Characteristics [Organism] Term Source REF Characteristics [StrainOrLine] Term Source REF Characteristics [Genotype] Term Source REF Characteristics [Phenotype] Term Source REF Protocol REF Parameter Value [agitation] Parameter Value [seeding] Parameter Value [time] Parameter Value [volume] Parameter Value [aeration] Parameter Value [medium] Parameter Value [temperature] Sample Name Protocol REF Parameter Value [seeding] Parameter Value [aeration] Parameter Value [temperature] Parameter Value [volume] Parameter Value [agitation] Parameter Value [medium] Parameter Value [time] Sample Name Protocol REF Parameter Value [RNA stabilisation] Parameter Value [yield] Parameter Value [bacteria harvested] Parameter Value [quantitation method] Extract Name Material Type Protocol REF Parameter Value [fluorescent label] Parameter Value [labelled extract yield] Parameter Value [DNA quantity] Parameter Value [flourescence label] Parameter Value [DNA quantitiy] Labeled Extract Name Label Material Type Term Source REF Protocol REF Parameter Value [Wash B time 2] Parameter Value [Wash B time 1] Parameter Value [hybridization temperature] Parameter Value [Wash A temperature] Parameter Value [Wash B temperature] Parameter Value [Wash A time] Parameter Value [hybridization time] Parameter Value [hybridization volume] Protocol REF Hybridization Name Array Design REF Term Source REF Protocol REF Protocol REF Factor Value [timepoint] Unit [TimeUnit] Factor Value [StrainOrLine] Factor Value [grow] Scan Name Array Data File Comment [ArrayExpress FTP file] Derived Array Data Matrix File Comment [Derived ArrayExpress FTP file] Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08452 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11280 MBAD_9077.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11280.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 H37Rv chemostat culture (B) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl H37Rv chemostat culture (B) P-MTAB-22142 GTC 16 20 spectrophotometer RNA t=5m HCL H37Rv (B) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 5 Cy5 5 Cy5 t=5m HCL H37Rv (B1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08452 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 5 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11280 MBAD_9076.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11280.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:9075 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08483 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11261 MBAD_8993.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11261.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22140 roller bottle 1 6-10 100 aerobic Pyruvate based minimal media 37 MM culture H37Rv (A) P-MTAB-22142 GTC 10 20 spectrophotometer MM RNA H37Rv (A) total_RNA P-MTAB-22145 3 Cy5 3 Cy5 MM H37Rv (A3) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08483 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv exponential growth bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11261 MBAD_8994.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11261.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:8987 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08466 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11252 MBAD_8930.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11252.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 H37Rv chemostat culture (C) P-MTAB-22142 GTC 8 20 spectrophotometer SS RNA H37Rv (C) total_RNA P-MTAB-22145 3 Cy5 3 Cy5 SS H37Rv (C3) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08466 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv steady state bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11252 MBAD_8929.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11252.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:8976 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08455 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11283 MBAD_9088.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11283.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 H37Rv chemostat culture (B) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl H37Rv chemostat culture (B) P-MTAB-22142 GTC 21 20 spectrophotometer RNA t=30m HCL H37Rv (B) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 5 Cy5 5 Cy5 t=30m HCL H37Rv (B1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08455 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 30 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11283 MBAD_9089.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11283.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 AF2122/97 chemostat culture (C) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl chemostat culture AF2122/97 (C) P-MTAB-22142 GTC 11 20 spectrophotometer RNA t=5m HCL AF2122/97 (C) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 2 Cy5 2 Cy5 t=5m HCL AF2122/97 (C2) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05495 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 5 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11213 MBAD_5464.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11213.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2 2 Cy3 AF2122/97 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 05/03/00 65 22 2 16 60 P-MTAB-22146 Hyb:05495 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11213 MBAD_5463.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11213.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:8975 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08454 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11305 MBAD_9309.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11305.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 H37Rv chemostat culture (B) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl H37Rv chemostat culture (B) P-MTAB-22142 GTC 18 20 spectrophotometer RNA t=15m HCL H37Rv (B) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 5 Cy5 5 Cy5 t=15m HCL H37Rv (B2) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08454 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 15 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11305 MBAD_9310.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11305.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2 2 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:9102 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08502 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11226 MBAD_8834.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11226.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 AF2122/97 chemostat culture (C) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl chemostat culture AF2122/97 (C) P-MTAB-22142 GTC 12 20 spectrophotometer RNA t=15m HCL AF2122/97 (C) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 3 Cy5 3 Cy5 t=15m HCL AF2122/97 (C4) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08502 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 15 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11226 MBAD_8835.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11226.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2 2 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:9110 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08510 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11231 MBAD_8846.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11231.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22140 roller bottle 1 6-10 100 aerobic Pyruvate based minimal media 37 AF2122/97 MM batch culture (A) P-MTAB-22142 GTC 10 20 spectrophotometer MM RNA AF2122/97 (A) total_RNA P-MTAB-22145 3 Cy5 3 Cy5 MM AF2122/97 (A2) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08510 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 exponential growth bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11231 MBAD_8847.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11231.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 H37Rv chemostat culture (B) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl H37Rv chemostat culture (B) P-MTAB-22142 GTC 9 20 spectrophotometer RNA t=24h HCL H37Rv (B) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 5 Cy5 5 Cy5 t=24h HCL H37Rv (B1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08459 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 24 hours H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11287 MBAD_9105.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11287.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:8980 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 05/03/00 65 22 2 20 60 P-MTAB-22146 Hyb:08459 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11287 MBAD_9104.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11287.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22140 roller bottle 1 6-10 100 aerobic Pyruvate based minimal media 37 MM culture H37Rv (C) P-MTAB-22142 GTC 10 20 spectrophotometer MM RNA H37Rv (C) total_RNA P-MTAB-22145 3 Cy5 3 Cy5 MM H37Rv (C1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08487 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv exponential growth bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11265 MBAD_9020.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11265.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:9079 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08487 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11265 MBAD_9019.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11265.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 AF2122/97 chemostat culture (C) P-MTAB-22142 GTC 8 20 spectrophotometer SS RNA AF2122/97 (C) total_RNA P-MTAB-22145 3 Cy5 3 Cy5 SS AF2122/97 (C1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05489 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 steady state bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11215 MBAD_5468.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11215.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2 2 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:6784 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05489 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11215 MBAD_5467.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11215.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:8938 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08434 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 15 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11269 MBAD_9044.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11269.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 H37Rv chemostat culture (A) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl H37Rv chemostat culture (A) P-MTAB-22142 GTC 9 20 spectrophotometer RNA t=15m HCl H37Rv (A) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 3 Cy5 3 Cy5 t=15m HCl H37Rv (A2) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08434 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11269 MBAD_9045.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11269.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2 2 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:9109 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08509 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11230 MBAD_8843.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11230.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22140 roller bottle 1 6-10 100 aerobic Pyruvate based minimal media 37 AF2122/97 MM batch culture (A) P-MTAB-22142 GTC 10 20 spectrophotometer MM RNA AF2122/97 (A) total_RNA P-MTAB-22145 3 Cy5 3 Cy5 MM AF2122/97 (A1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08509 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 exponential growth bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11230 MBAD_8842.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11230.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2 2 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:9096 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08496 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11301 MBAD_9283.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11301.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 AF2122/97 chemostat culture (C) P-MTAB-22142 GTC 8 20 spectrophotometer SS RNA AF2122/97 (C) total_RNA P-MTAB-22145 3 Cy5 3 Cy5 SS AF2122/97 (C3) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08496 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 steady state bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11301 MBAD_9282.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11301.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2 2 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:9100 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08500 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11224 MBAD_8800.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11224.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 AF2122/97 chemostat culture (C) P-MTAB-22142 GTC 8 20 spectrophotometer SS RNA AF2122/97 (C) total_RNA P-MTAB-22145 3 Cy5 3 Cy5 SS AF2122/97 (C7) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08500 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 steady state bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11224 MBAD_8799.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11224.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:8986 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 05/03/00 65 22 2 20 60 P-MTAB-22146 Hyb:08465 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11251 MBAD_8925.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11251.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 H37Rv chemostat culture (C) P-MTAB-22142 GTC 8 20 spectrophotometer SS RNA H37Rv (C) total_RNA P-MTAB-22145 3 Cy5 3 Cy5 SS H37Rv (C2) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08465 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv steady state bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11251 MBAD_8926.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11251.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:8965 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08443 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11243 MBAD_8894.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11243.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 H37Rv chemostat culture (B) P-MTAB-22142 GTC 17 20 spectrophotometer SS RNA H37Rv (B) total_RNA P-MTAB-22145 5 Cy5 5 Cy5 SS H37Rv (B1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 05/03/00 65 22 2 20 60 P-MTAB-22146 Hyb:08443 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv steady state bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11243 MBAD_8893.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11243.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:9064 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08472 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11292 MBAD_9121.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11292.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 H37Rv chemostat culture (C) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl H37Rv chemostat culture (C) P-MTAB-22142 GTC 11 20 spectrophotometer RNA t=5m HCL H37Rv (C) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 3 Cy5 3 Cy5 t=5m HCL H37Rv (C1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08472 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 5 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11292 MBAD_9120.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11292.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 AF2122/97 chemostat culture (B) P-MTAB-22142 GTC 17 20 spectrophotometer SS RNA AF2122/97 (B) total_RNA P-MTAB-22145 5 Cy5 5 Cy5 SS AF2122/97 (B3) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08493 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 steady state bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11217 MBAD_8771.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11217.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2 2 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:9093 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08493 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11217 MBAD_8772.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11217.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 H37Rv chemostat culture (C) P-MTAB-22142 GTC 8 20 spectrophotometer SS RNA H37Rv (C) total_RNA P-MTAB-22145 3 Cy5 3 Cy5 SS H37Rv (C7) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08470 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv steady state bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11256 MBAD_8945.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11256.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:9062 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08470 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11256 MBAD_8946.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11256.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:9073 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08481 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11259 MBAD_8979.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11259.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22140 roller bottle 1 6-10 100 aerobic Pyruvate based minimal media 37 MM culture H37Rv (A) P-MTAB-22142 GTC 10 20 spectrophotometer MM RNA H37Rv (A) total_RNA P-MTAB-22145 3 Cy5 3 Cy5 MM H37Rv (A1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08481 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv exponential growth bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11259 MBAD_8978.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11259.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2.5 2.5 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:6782 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05487 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11195 MBAD_5429.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11195.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 AF2122/97 chemostat culture (B) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl AF2122/97 chemostat culture (B) P-MTAB-22142 GTC 9 20 spectrophotometer RNA t=24h HCL AF2122/97 (B) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 5 Cy5 5 Cy5 t=24h HCL AF2122/97 (B1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05487 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 24 hours AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11195 MBAD_5430.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11195.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 H37Rv chemostat culture (C) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl H37Rv chemostat culture (C) P-MTAB-22142 GTC 7 20 spectrophotometer RNA t=30m HCL H37Rv (C) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 3 Cy5 3 Cy5 t=30m HCL H37Rv (C1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08475 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 30 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11294 MBAD_9134.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11294.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:9067 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08475 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11294 MBAD_9135.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11294.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:8967 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08445 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11245 MBAD_8901.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11245.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 H37Rv chemostat culture (B) P-MTAB-22142 GTC 17 20 spectrophotometer SS RNA H37Rv (B) total_RNA P-MTAB-22145 5 Cy5 5 Cy5 SS H37Rv (B3) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08445 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv steady state bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11245 MBAD_8902.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11245.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:8941 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08437 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11273 MBAD_9054.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11273.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 H37Rv chemostat culture (A) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl H37Rv chemostat culture (A) P-MTAB-22142 GTC 19 20 spectrophotometer RNA t=60m HCL H37Rv (A) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 5 Cy5 5 Cy5 t=60m HCL H37Rv (A1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08437 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 60 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11273 MBAD_9055.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11273.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2.5 2.5 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:6781 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05486 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11202 MBAD_5437.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11202.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 AF2122/97 chemostat culture (B) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl AF2122/97 chemostat culture (B) P-MTAB-22142 GTC 19 20 spectrophotometer RNA t=60m HCL AF2122/97 (B) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 5 Cy5 5 Cy5 t=60m HCL AF2122/97 (B2) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05486 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 60 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11202 MBAD_5438.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11202.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2 2 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:6771 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05389 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11191 MBAD_5421.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11191.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 AF2122/97 chemostat culture (A) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl AF2122/97 chemostat culture (A) P-MTAB-22142 GTC 17 20 spectrophotometer RNA t=24h HCL AF2122/97 (A) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 5 Cy5 5 Cy5 t=24h HCL AF2122/97 (A1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05389 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 24 hours AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11191 MBAD_5422.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11191.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:9060 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08468 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11254 MBAD_8938.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11254.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 H37Rv chemostat culture (C) P-MTAB-22142 GTC 8 20 spectrophotometer SS RNA H37Rv (C) total_RNA P-MTAB-22145 3 Cy5 3 Cy5 SS H37Rv (C5) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 05/03/00 65 22 2 20 60 P-MTAB-22146 Hyb:08468 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv steady state bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11254 MBAD_8937.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11254.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22140 roller bottle 1 6-10 100 aerobic Pyruvate based minimal media 37 AF2122/97 MM batch culture (C) P-MTAB-22142 GTC 10 20 spectrophotometer MM RNA AF2122/97 (C) total_RNA P-MTAB-22145 3 Cy5 3 Cy5 MM AF2122/97 (C2) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 05/03/00 65 22 2 20 60 P-MTAB-22146 Hyb:08516 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 exponential growth bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11237 MBAD_8869.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11237.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2 2 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:9116 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08516 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11237 MBAD_8868.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11237.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:8960 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08438 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 60 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11315 MBAD_9059.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11315.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 H37Rv chemostat culture (A) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl H37Rv chemostat culture (A) P-MTAB-22142 GTC 19 20 spectrophotometer RNA t=60m HCL H37Rv (A) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 5 Cy5 5 Cy5 t=60m HCL H37Rv (A2) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08438 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11315 MBAD_9058.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11315.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 AF2122/97 chemostat culture (C) P-MTAB-22142 GTC 8 20 spectrophotometer SS RNA AF2122/97 (C) total_RNA P-MTAB-22145 3 Cy5 3 Cy5 SS AF2122/97 (C5) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08498 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 steady state bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11222 MBAD_8791.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11222.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2 2 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:9098 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08498 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11222 MBAD_8792.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11222.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 H37Rv chemostat culture (C) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl H37Rv chemostat culture (C) P-MTAB-22142 GTC 12 20 spectrophotometer RNA t=15m HCL H37Rv (C) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 3 Cy5 3 Cy5 t=15m HCL H37Rv (C1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08473 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 15 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11293 MBAD_9125.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11293.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:9065 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08473 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11293 MBAD_9124.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11293.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:8962 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08440 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11276 MBAD_9067.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11276.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 H37Rv chemostat culture (A) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl H37Rv chemostat culture (A) P-MTAB-22142 GTC 17 20 spectrophotometer RNA t=24h HCL H37Rv (A) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 5 Cy5 5 Cy5 t=24h HCL H37Rv (A2) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08440 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 24 hours H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11276 MBAD_9066.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11276.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 AF2122/97 chemostat culture (B) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl AF2122/97 chemostat culture (B) P-MTAB-22142 GTC 16 20 spectrophotometer RNA t=5m HCL AF2122/97 (B) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 5 Cy5 5 Cy5 t=5m HCL AF2122/97 (B1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05396 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11201 MBAD_5432.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11201.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2.5 2.5 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:6775 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05396 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 5 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11201 MBAD_5431.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11201.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22140 roller bottle 1 6-10 100 aerobic Pyruvate based minimal media 37 AF2122/97 MM batch culture (B) P-MTAB-22142 GTC 10 20 spectrophotometer MM RNA AF2122/97 (B) total_RNA P-MTAB-22145 3 Cy5 3 Cy5 MM AF2122/97 (B2) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08513 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 exponential growth bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11234 MBAD_8856.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11234.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2 2 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:9113 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08513 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11234 MBAD_8857.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11234.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2 2 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:8900 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08490 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11216 MBAD_8762.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11216.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 AF2122/97 chemostat culture (A) P-MTAB-22142 GTC 10 20 spectrophotometer SS RNA AF2122/97 (A) total_RNA P-MTAB-22145 3 Cy5 3 Cy5 SS AF2122/97 (A3) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08490 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 steady state bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11216 MBAD_8761.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11216.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22140 roller bottle 1 6-10 100 aerobic Pyruvate based minimal media 37 AF2122/97 MM batch culture (A) P-MTAB-22142 GTC 10 20 spectrophotometer MM RNA AF2122/97 (A) total_RNA P-MTAB-22145 3 Cy5 3 Cy5 MM AF2122/97 (A3) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 05/03/00 65 22 2 20 60 P-MTAB-22146 Hyb:08511 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 exponential growth bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11232 MBAD_8851.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11232.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2 2 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:9111 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08511 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11232 MBAD_8850.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11232.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 H37Rv chemostat culture (A) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl H37Rv chemostat culture (A) P-MTAB-22142 GTC 9 20 spectrophotometer RNA t=15m HCl H37Rv (A) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 3 Cy5 3 Cy5 t=15m HCl H37Rv (A1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 05/03/00 65 22 2 20 60 P-MTAB-22146 Hyb:08433 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 15 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11268 MBAD_9040.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11268.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:8937 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08433 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11268 MBAD_9041.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11268.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:9063 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08471 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11258 MBAD_8950.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11258.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 H37Rv chemostat culture (C) P-MTAB-22142 GTC 8 20 spectrophotometer SS RNA H37Rv (C) total_RNA P-MTAB-22145 3 Cy5 3 Cy5 SS H37Rv (C8) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08471 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv steady state bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11258 MBAD_8949.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11258.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2 2 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:6785 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05490 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11302 MBAD_9285.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11302.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 AF2122/97 chemostat culture (C) P-MTAB-22142 GTC 8 20 spectrophotometer SS RNA AF2122/97 (C) total_RNA P-MTAB-22145 3 Cy5 3 Cy5 SS AF2122/97 (C2) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05490 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 steady state bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11302 MBAD_9284.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11302.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:8971 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08450 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11248 MBAD_8914.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11248.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 H37Rv chemostat culture (B) P-MTAB-22142 GTC 17 20 spectrophotometer SS RNA H37Rv (B) total_RNA P-MTAB-22145 5 Cy5 5 Cy5 SS H37Rv (B6) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08450 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv steady state bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11248 MBAD_8913.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11248.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 AF2122/97 chemostat culture (C) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl chemostat culture AF2122/97 (C) P-MTAB-22142 GTC 16 20 spectrophotometer RNA t=60m HCL AF2122/97 (C) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 3 Cy5 3 Cy5 t=60m HCL AF2122/97 (C1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 05/03/00 65 22 2 16 60 P-MTAB-22146 Hyb:05502 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 60 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11801 MBAD_5402.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11801.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2 2 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:6792 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05502 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11801 MBAD_5469.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11801.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 H37Rv chemostat culture (C) P-MTAB-22142 GTC 8 20 spectrophotometer SS RNA H37Rv (C) total_RNA P-MTAB-22145 3 Cy5 3 Cy5 SS H37Rv (C1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08464 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv steady state bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11250 MBAD_8921.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11250.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:8985 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 05/03/00 65 22 2 20 60 P-MTAB-22146 Hyb:08464 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11250 MBAD_8922.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11250.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22140 roller bottle 1 6-10 100 aerobic Pyruvate based minimal media 37 AF2122/97 MM batch culture (C) P-MTAB-22142 GTC 10 20 spectrophotometer MM RNA AF2122/97 (C) total_RNA P-MTAB-22145 3 Cy5 3 Cy5 MM AF2122/97 (C3) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08517 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 exponential growth bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11238 MBAD_8873.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11238.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2 2 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:9117 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 05/03/00 65 22 2 20 60 P-MTAB-22146 Hyb:08517 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11238 MBAD_8872.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11238.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 H37Rv chemostat culture (C) P-MTAB-22142 GTC 8 20 spectrophotometer SS RNA H37Rv (C) total_RNA P-MTAB-22145 3 Cy5 3 Cy5 SS H37Rv (C6) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08469 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv steady state bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11255 MBAD_8941.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11255.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:9061 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08469 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11255 MBAD_8942.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11255.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2 2 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:6767 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05384 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 15 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11185 MBAD_5409.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11185.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 AF2122/97 chemostat culture (A) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl AF2122/97 chemostat culture (A) P-MTAB-22142 GTC 9 20 spectrophotometer RNA t=15m HCL AF2122/97 (A) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 3 Cy5 3 Cy5 t=15m HCL AF2122/97 (A2) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 05/03/00 65 22 2 16 60 P-MTAB-22146 Hyb:05384 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11185 MBAD_5410.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11185.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:8974 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08453 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 15 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11316 MBAD_9084.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11316.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 H37Rv chemostat culture (B) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl H37Rv chemostat culture (B) P-MTAB-22142 GTC 18 20 spectrophotometer RNA t=15m HCL H37Rv (B) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 5 Cy5 5 Cy5 t=15m HCL H37Rv (B1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 05/03/00 65 22 2 20 60 P-MTAB-22146 Hyb:08453 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11316 MBAD_9085.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11316.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 H37Rv chemostat culture (B) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl H37Rv chemostat culture (B) P-MTAB-22142 GTC 16 20 spectrophotometer RNA t=0m HCL H37Rv (B) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 5 Cy5 5 Cy5 t=0m HCL H37Rv (B1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08462 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11289 MBAD_9112.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11289.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:8983 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08462 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11289 MBAD_9113.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11289.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 AF2122/97 chemostat culture (C) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl chemostat culture AF2122/97 (C) P-MTAB-22142 GTC 5 20 spectrophotometer RNA t=24h HCL AF2122/97 (C) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 3 Cy5 3 Cy5 t=24h HCL AF2122/97 (C3) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08505 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 24 hours AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11307 MBAD_9324.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11307.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2 2 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:9105 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08505 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11307 MBAD_9323.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11307.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 H37Rv chemostat culture (C) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl H37Rv chemostat culture (C) P-MTAB-22142 GTC 16 20 spectrophotometer RNA t=60m HCL H37Rv (C) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 3 Cy5 3 Cy5 t=60m HCL H37Rv (C1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08478 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 60 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11297 MBAD_9266.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11297.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:9070 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 05/03/00 65 22 2 20 60 P-MTAB-22146 Hyb:08478 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11297 MBAD_9267.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11297.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 H37Rv chemostat culture (C) P-MTAB-22142 GTC 8 20 spectrophotometer SS RNA H37Rv (C) total_RNA P-MTAB-22145 3 Cy5 3 Cy5 SS H37Rv (C4) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08467 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv steady state bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11253 MBAD_8933.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11253.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:9059 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08467 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11253 MBAD_8934.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11253.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 H37Rv chemostat culture (A) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl H37Rv chemostat culture (A) P-MTAB-22142 GTC 9 20 spectrophotometer RNA t=30m HCL H37Rv (A) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 3 Cy5 3 Cy5 t=30m HCL H37Rv (A2) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08436 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 30 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11314 MBAD_9051.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11314.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:8940 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08436 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11314 MBAD_9050.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11314.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 AF2122/97 chemostat culture (C) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl chemostat culture AF2122/97 (C) P-MTAB-22142 GTC 7 20 spectrophotometer RNA t=30m HCL AF2122/97 (C) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 3 Cy5 3 Cy5 t=30m HCL AF2122/97 (C3) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08504 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 30 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11212 MBAD_5457.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11212.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2 2 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:9104 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08504 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11212 MBAD_5456.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11212.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 AF2122/97 chemostat culture (B) P-MTAB-22142 GTC 17 20 spectrophotometer SS RNA AF2122/97 (B) total_RNA P-MTAB-22145 5 Cy5 5 Cy5 SS AF2122/97 (B2) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05394 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 steady state bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11206 MBAD_5446.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11206.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2.5 2.5 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:6774 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05394 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11206 MBAD_5445.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11206.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 AF2122/97 chemostat culture (B) P-MTAB-22142 GTC 17 20 spectrophotometer SS RNA AF2122/97 (B) total_RNA P-MTAB-22145 5 Cy5 5 Cy5 SS AF2122/97 (B1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 05/03/00 65 22 2 16 60 P-MTAB-22146 Hyb:05392 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 steady state bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11203 MBAD_5440.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11203.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2.5 2.5 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:6773 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05392 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11203 MBAD_5439.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11203.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 H37Rv chemostat culture (B) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl H37Rv chemostat culture (B) P-MTAB-22142 GTC 21 20 spectrophotometer RNA t=30m HCL H37Rv (B) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 5 Cy5 5 Cy5 t=30m HCL H37Rv (B2) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08456 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 30 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11284 MBAD_9093.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11284.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:8977 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08456 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11284 MBAD_9092.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11284.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 H37Rv chemostat culture (B) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl H37Rv chemostat culture (B) P-MTAB-22142 GTC 9 20 spectrophotometer RNA t=24h HCL H37Rv (B) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 3 Cy5 3 Cy5 t=24h HCL H37Rv (B2) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08460 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 24 hours H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11288 MBAD_9108.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11288.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:8981 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08460 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11288 MBAD_9109.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11288.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 AF2122/97 chemostat culture (B) P-MTAB-22142 GTC 17 20 spectrophotometer SS RNA AF2122/97 (B) total_RNA P-MTAB-22145 5 Cy5 5 Cy5 SS AF2122/97 (B4) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08494 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 steady state bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11219 MBAD_8775.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11219.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2 2 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:9094 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08494 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11219 MBAD_8776.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11219.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 H37Rv chemostat culture (A) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl H37Rv chemostat culture (A) P-MTAB-22142 GTC 9 20 spectrophotometer RNA t=30m HCL H37Rv (A) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 3 Cy5 3 Cy5 t=30m HCL H37Rv (A1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08435 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 30 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11270 MBAD_9046.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11270.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:8939 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08435 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11270 MBAD_9047.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11270.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2 2 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:6794 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05504 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11229 MBAD_8838.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11229.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 AF2122/97 chemostat culture (C) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl chemostat culture AF2122/97 (C) P-MTAB-22142 GTC 5 20 spectrophotometer RNA t=24h HCL AF2122/97 (C) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 3 Cy5 3 Cy5 t=24h HCL AF2122/97 (C2) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 05/03/00 65 22 2 16 60 P-MTAB-22146 Hyb:05504 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 24 hours AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11229 MBAD_8839.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11229.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2 2 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:9114 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08514 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11235 MBAD_8861.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11235.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22140 roller bottle 1 6-10 100 aerobic Pyruvate based minimal media 37 AF2122/97 MM batch culture (B) P-MTAB-22142 GTC 10 20 spectrophotometer MM RNA AF2122/97 (B) total_RNA P-MTAB-22145 3 Cy5 3 Cy5 MM AF2122/97 (B3) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08514 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 exponential growth bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11235 MBAD_8860.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11235.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22140 roller bottle 1 6-10 100 aerobic Pyruvate based minimal media 37 MM culture H37Rv (B) P-MTAB-22142 GTC 10 20 spectrophotometer MM RNA H37Rv (B) total_RNA P-MTAB-22145 3 Cy5 3 Cy5 MM H37Rv (B2) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08485 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv exponential growth bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11263 MBAD_9001.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11263.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:9077 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08485 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11263 MBAD_9002.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11263.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 AF2122/97 chemostat culture (A) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl AF2122/97 chemostat culture (A) P-MTAB-22142 GTC 9 20 spectrophotometer RNA t=5m HCL AF2122/97 (A) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 3 Cy5 3 Cy5 t=5m 5m HCL AF2122/97 (A2) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05381 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 5 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11183 MBAD_5406.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11183.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2 2 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:6765 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05381 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11183 MBAD_5405.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11183.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2 2 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:9101 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08501 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11225 MBAD_8804.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11225.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 AF2122/97 chemostat culture (C) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl chemostat culture AF2122/97 (C) P-MTAB-22142 GTC 12 20 spectrophotometer RNA t=15m HCL AF2122/97 (C) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 3 Cy5 3 Cy5 t=15m HCL AF2122/97 (C3) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08501 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 15 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11225 MBAD_8803.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11225.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 AF2122/97 chemostat culture (C) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl chemostat culture AF2122/97 (C) P-MTAB-22142 GTC 7 20 spectrophotometer RNA t=30m HCL AF2122/97 (C) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 3 Cy5 3 Cy5 t=30m HCL AF2122/97 (C1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05500 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 30 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11312 MBAD_5452.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11312.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2 2 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:6790 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 05/03/00 65 22 2 16 60 P-MTAB-22146 Hyb:05500 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11312 MBAD_5451.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11312.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:9068 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08476 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11295 MBAD_9138.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11295.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 H37Rv chemostat culture (C) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl H37Rv chemostat culture (C) P-MTAB-22142 GTC 7 20 spectrophotometer RNA t=30m HCL H37Rv (C) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 3 Cy5 3 Cy5 t=30m HCL H37Rv (C2) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08476 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 30 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11295 MBAD_9139.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11295.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 H37Rv chemostat culture (B) P-MTAB-22142 GTC 17 20 spectrophotometer SS RNA H37Rv (B) total_RNA P-MTAB-22145 5 Cy5 5 Cy5 SS H37Rv (B7) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08451 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv steady state bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11249 MBAD_8917.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11249.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:8972 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08451 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11249 MBAD_8918.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11249.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:9069 Cy3 synthetic_DNA The MGED Ontology P-MTAB-22146 Hyb:08477 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 P-MTAB-22147 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11296 MBAD_9142.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11296.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 H37Rv chemostat culture (C) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl H37Rv chemostat culture (C) P-MTAB-22142 GTC 7 20 spectrophotometer RNA t=30m HCL H37Rv (C) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 3 Cy5 3 Cy5 t=30m HCL H37Rv (C3) Cy5 synthetic_DNA The MGED Ontology P-MTAB-22146 Hyb:08477 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 P-MTAB-22147 30 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11296 MBAD_9143.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11296.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 H37Rv chemostat culture (A) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl H37Rv chemostat culture (A) P-MTAB-22142 GTC 23 20 spectrophotometer RNA t=0m HCL H37Rv (A) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 3 Cy5 3 Cy5 t=0m HCL H37Rv (A1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08441 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11277 MBAD_9068.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11277.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:8963 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08441 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11277 MBAD_9069.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11277.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:9078 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08486 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11264 MBAD_9016.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11264.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22140 roller bottle 1 6-10 100 aerobic Pyruvate based minimal media 37 MM culture H37Rv (B) P-MTAB-22142 GTC 10 20 spectrophotometer MM RNA H37Rv (B) total_RNA P-MTAB-22145 3 Cy5 3 Cy5 MM H37Rv (B3) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08486 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv exponential growth bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11264 MBAD_9015.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11264.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 H37Rv chemostat culture (A) P-MTAB-22142 GTC 10 20 spectrophotometer SS RNA H37Rv (A) total_RNA P-MTAB-22145 3 Cy5 3 Cy5 SS H37Rv (A2) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08430 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv steady state bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11313 MBAD_8880.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11313.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:8934 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08430 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11313 MBAD_8881.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11313.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:9076 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08484 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11262 MBAD_8998.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11262.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22140 roller bottle 1 6-10 100 aerobic Pyruvate based minimal media 37 MM culture H37Rv (B) P-MTAB-22142 GTC 10 20 spectrophotometer MM RNA H37Rv (B) total_RNA P-MTAB-22145 3 Cy5 3 Cy5 MM H37Rv (B1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 05/03/00 65 22 2 20 60 P-MTAB-22146 Hyb:08484 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv exponential growth bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11262 MBAD_8997.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11262.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:9080 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08488 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11266 MBAD_9023.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11266.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22140 roller bottle 1 6-10 100 aerobic Pyruvate based minimal media 37 MM culture H37Rv (C) P-MTAB-22142 GTC 10 20 spectrophotometer MM RNA H37Rv (C) total_RNA P-MTAB-22145 3 Cy5 3 Cy5 MM H37Rv (C2) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 05/03/00 65 22 2 20 60 P-MTAB-22146 Hyb:08488 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv exponential growth bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11266 MBAD_9024.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11266.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2 2 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:9108 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08508 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11304 MBAD_9297.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11304.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 AF2122/97 chemostat culture (C) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl chemostat culture AF2122/97 (C) P-MTAB-22142 GTC 11 20 spectrophotometer RNA t=0m HCL AF2122/97 (C) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 2 Cy5 2 Cy5 t=0m HCL AF2122/97 (C3) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 05/03/00 65 22 2 20 60 P-MTAB-22146 Hyb:08508 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11304 MBAD_9296.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11304.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 H37Rv chemostat culture (C) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl H37Rv chemostat culture (C) P-MTAB-22142 GTC 5 20 spectrophotometer RNA t=24h HCL H37Rv (C) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 3 Cy5 3 Cy5 t=24h HCL H37Rv (C1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08479 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 24 hours H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11298 MBAD_9274.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11298.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:9071 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08479 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11298 MBAD_9275.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11298.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2 2 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:9106 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08506 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11308 MBAD_9326.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11308.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 AF2122/97 chemostat culture (C) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl chemostat culture AF2122/97 (C) P-MTAB-22142 GTC 11 20 spectrophotometer RNA t=0m HCL AF2122/97 (C) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 3 Cy5 3 Cy5 t=0m HCL AF2122/97 (C1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08506 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11308 MBAD_9325.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11308.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 AF2122/97 chemostat culture (B) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl AF2122/97 chemostat culture (B) P-MTAB-22142 GTC 18 20 spectrophotometer RNA t=15m HCL AF2122/97 (B) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 5 Cy5 5 Cy5 t=15m HCL AF2122/97 (B2) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 05/03/00 65 22 2 16 60 P-MTAB-22146 Hyb:05398 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 15 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11197 MBAD_5434.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11197.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2.5 2.5 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:6777 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05398 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11197 MBAD_5433.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11197.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 AF2122/97 chemostat culture (B) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl AF2122/97 chemostat culture (B) P-MTAB-22142 GTC 21 20 spectrophotometer RNA t=30m HCL AF2122/97 (B) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 5 Cy5 5 Cy5 t=30m HCL AF2122/97 (B2) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 45 P-MTAB-22146 Hyb:05484 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 30 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11204 MBAD_5442.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11204.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2.5 2.5 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:6779 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 45 P-MTAB-22146 Hyb:05484 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11204 MBAD_5441.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11204.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2.5 2.5 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:9128 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08523 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11306 MBAD_9314.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11306.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 AF2122/97 chemostat culture (B) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl AF2122/97 chemostat culture (B) P-MTAB-22142 GTC 19 20 spectrophotometer RNA t=60m HCL AF2122/97 (B) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 5 Cy5 5 Cy5 t=60m HCL AF2122/97 (B3) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08523 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 60 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11306 MBAD_9313.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11306.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:8978 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08457 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11285 MBAD_9096.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11285.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 H37Rv chemostat culture (B) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl H37Rv chemostat culture (B) P-MTAB-22142 GTC 19 20 spectrophotometer RNA t=60m HCL H37Rv (B) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 5 Cy5 5 Cy5 t=60m HCL H37Rv (B1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08457 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 60 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11285 MBAD_9097.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11285.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2 2 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:6772 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05391 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11192 MBAD_5423.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11192.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 AF2122/97 chemostat culture (A) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl AF2122/97 chemostat culture (A) P-MTAB-22142 GTC 17 20 spectrophotometer RNA t=24h HCL AF2122/97 (A) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 5 Cy5 5 Cy5 t=24h HCL AF2122/97 (A2) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05391 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 24 hours AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11192 MBAD_5424.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11192.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 H37Rv chemostat culture (C) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl H37Rv chemostat culture (C) P-MTAB-22142 GTC 11 20 spectrophotometer RNA t=0m HCL H37Rv (C) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 3 Cy5 3 Cy5 t=0m HCL H37Rv (C1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08480 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11300 MBAD_9276.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11300.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:9072 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 05/03/00 65 22 2 20 60 P-MTAB-22146 Hyb:08480 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11300 MBAD_9528.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11300.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2 2 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:9097 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08497 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11221 MBAD_8789.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11221.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 AF2122/97 chemostat culture (C) P-MTAB-22142 GTC 8 20 spectrophotometer SS RNA AF2122/97 (C) total_RNA P-MTAB-22145 3 Cy5 3 Cy5 SS AF2122/97 (C4) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08497 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 steady state bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11221 MBAD_8788.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11221.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 H37Rv chemostat culture (B) P-MTAB-22142 GTC 17 20 spectrophotometer SS RNA H37Rv (B) total_RNA P-MTAB-22145 5 Cy5 5 Cy5 SS H37Rv (B4) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08446 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv steady state bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11246 MBAD_8906.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11246.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:8968 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08446 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11246 MBAD_8905.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11246.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:8961 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08439 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11275 MBAD_9063.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11275.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 H37Rv chemostat culture (A) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl H37Rv chemostat culture (A) P-MTAB-22142 GTC 17 20 spectrophotometer RNA t=24h HCL H37Rv (A) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 5 Cy5 5 Cy5 t=24h HCL H37Rv (A1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08439 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 24 hours H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11275 MBAD_9062.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11275.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 H37Rv chemostat culture (B) P-MTAB-22142 GTC 17 20 spectrophotometer SS RNA H37Rv (B) total_RNA P-MTAB-22145 5 Cy5 5 Cy5 SS H37Rv (B5) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08449 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv steady state bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11247 MBAD_8909.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11247.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:8970 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 05/03/00 65 22 2 20 60 P-MTAB-22146 Hyb:08449 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11247 MBAD_8910.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11247.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:8964 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08442 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11279 MBAD_9073.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11279.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 H37Rv chemostat culture (A) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl H37Rv chemostat culture (A) P-MTAB-22142 GTC 23 20 spectrophotometer RNA t=0m HCL H37Rv (A) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 3 Cy5 3 Cy5 t=0m HCL H37Rv (A2) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08442 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11279 MBAD_9072.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11279.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 H37Rv chemostat culture (B) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl H37Rv chemostat culture (B) P-MTAB-22142 GTC 16 20 spectrophotometer RNA t=0m HCL H37Rv (B) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 5 Cy5 5 Cy5 t=0m HCL H37Rv (B2) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08463 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11290 MBAD_9117.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11290.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:8984 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08463 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11290 MBAD_9116.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11290.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 AF2122/97 chemostat culture (A) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl AF2122/97 chemostat culture (A) P-MTAB-22142 GTC 9 20 spectrophotometer RNA t=5m HCL AF2122/97 (A) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 3 Cy5 3 Cy5 t=5m 5m HCL AF2122/97 (A1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05380 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 5 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11182 MBAD_5404.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11182.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2 2 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:6764 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05380 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11182 MBAD_5403.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11182.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 H37Rv chemostat culture (B) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl H37Rv chemostat culture (B) P-MTAB-22142 GTC 16 20 spectrophotometer RNA t=5m HCL H37Rv (B) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 5 Cy5 5 Cy5 t=5m HCL H37Rv (B2) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08461 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 5 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11281 MBAD_9081.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11281.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:8982 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08461 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11281 MBAD_9080.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11281.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2.5 2.5 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:6783 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05488 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11205 MBAD_5443.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11205.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 AF2122/97 chemostat culture (B) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl AF2122/97 chemostat culture (B) P-MTAB-22142 GTC 9 20 spectrophotometer RNA t=24h HCL AF2122/97 (B) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 3 Cy5 3 Cy5 t=24h HCL AF2122/97 (B2) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05488 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 24 hours AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11205 MBAD_5444.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11205.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 AF2122/97 chemostat culture (B) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl AF2122/97 chemostat culture (B) P-MTAB-22142 GTC 16 20 spectrophotometer RNA t=0m HCL AF2122/97 (B) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 5 Cy5 5 Cy5 t=0m HCL AF2122/97 (B1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08495 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11220 MBAD_8779.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11220.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2 2 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:9095 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08495 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11220 MBAD_8780.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11220.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 AF2122/97 chemostat culture (C) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl chemostat culture AF2122/97 (C) P-MTAB-22142 GTC 12 20 spectrophotometer RNA t=15m HCL AF2122/97 (C) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 3 Cy5 3 Cy5 t=15m HCL AF2122/97 (C1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05497 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 15 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11209 MBAD_5450.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11209.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2 2 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:6788 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05497 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11209 MBAD_5449.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11209.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:8933 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08429 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11239 MBAD_8877.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11239.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 H37Rv chemostat culture (A) P-MTAB-22142 GTC 10 20 spectrophotometer SS RNA H37Rv (A) total_RNA P-MTAB-22145 3 Cy5 3 Cy5 SS H37Rv (A1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 05/03/00 65 22 2 20 60 P-MTAB-22146 Hyb:08429 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv steady state bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11239 MBAD_8876.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11239.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 AF2122/97 chemostat culture (B) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl AF2122/97 chemostat culture (B) P-MTAB-22142 GTC 18 20 spectrophotometer RNA t=15m HCL AF2122/97 (B) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 5 Cy5 5 Cy5 t=15m HCL AF2122/97 (B1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05397 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 15 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11193 MBAD_5426.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11193.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2.5 2.5 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:6776 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05397 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11193 MBAD_5425.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11193.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 AF2122/97 chemostat culture (C) P-MTAB-22142 GTC 8 20 spectrophotometer SS RNA AF2122/97 (C) total_RNA P-MTAB-22145 3 Cy5 3 Cy5 SS AF2122/97 (C6) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08499 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 steady state bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11223 MBAD_8795.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11223.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2 2 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:9099 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08499 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11223 MBAD_8796.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11223.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:9066 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08474 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11309 MBAD_9527.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11309.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 H37Rv chemostat culture (C) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl H37Rv chemostat culture (C) P-MTAB-22142 GTC 12 20 spectrophotometer RNA t=15m HCL H37Rv (C) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 3 Cy5 3 Cy5 t=15m HCL H37Rv (C2) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08474 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 15 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11309 MBAD_9526.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11309.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 H37Rv chemostat culture (A) P-MTAB-22142 GTC 10 20 spectrophotometer SS RNA H37Rv (A) total_RNA P-MTAB-22145 3 Cy5 3 Cy5 SS H37Rv (A3) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08431 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv steady state bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11241 MBAD_8885.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11241.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:8935 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08431 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11241 MBAD_8886.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11241.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2.5 2.5 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:6780 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05485 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11194 MBAD_5427.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11194.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 AF2122/97 chemostat culture (B) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl AF2122/97 chemostat culture (B) P-MTAB-22142 GTC 19 20 spectrophotometer RNA t=60m HCL AF2122/97 (B) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 5 Cy5 5 Cy5 t=60m HCL AF2122/97 (B1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05485 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 60 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11194 MBAD_5428.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11194.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 AF2122/97 chemostat culture (C) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl chemostat culture AF2122/97 (C) P-MTAB-22142 GTC 11 20 spectrophotometer RNA t=0m HCL AF2122/97 (C) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 2 Cy5 2 Cy5 t=0m HCL AF2122/97 (C2) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08507 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11303 MBAD_9293.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11303.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2 2 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:9107 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08507 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11303 MBAD_9292.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11303.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2 2 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:6768 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05386 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11188 MBAD_5415.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11188.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 AF2122/97 chemostat culture (A) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl AF2122/97 chemostat culture (A) P-MTAB-22142 GTC 9 20 spectrophotometer RNA t=30m HCL AF2122/97 (A) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 3 Cy5 3 Cy5 t=30m HCL AF2122/97 (A1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05386 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 30 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11188 MBAD_5416.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11188.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:8966 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 05/03/00 65 22 2 20 60 P-MTAB-22146 Hyb:08444 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11244 MBAD_8898.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11244.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 H37Rv chemostat culture (B) P-MTAB-22142 GTC 17 20 spectrophotometer SS RNA H37Rv (B) total_RNA P-MTAB-22145 5 Cy5 5 Cy5 SS H37Rv (B2) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08444 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv steady state bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11244 MBAD_8897.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11244.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2 2 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:9112 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08512 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11233 MBAD_8853.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11233.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22140 roller bottle 1 6-10 100 aerobic Pyruvate based minimal media 37 AF2122/97 MM batch culture (B) P-MTAB-22142 GTC 10 20 spectrophotometer MM RNA AF2122/97 (B) total_RNA P-MTAB-22145 3 Cy5 3 Cy5 MM AF2122/97 (B1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08512 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 exponential growth bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11233 MBAD_8852.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11233.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2.5 2.5 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:6778 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05483 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11198 MBAD_5435.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11198.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 AF2122/97 chemostat culture (B) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl AF2122/97 chemostat culture (B) P-MTAB-22142 GTC 21 20 spectrophotometer RNA t=30m HCL AF2122/97 (B) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 5 Cy5 5 Cy5 t=30m HCL AF2122/97 (B1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 05/03/00 65 22 2 16 60 P-MTAB-22146 Hyb:05483 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 30 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11198 MBAD_5436.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11198.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 AF2122/97 chemostat culture (A) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl AF2122/97 chemostat culture (A) P-MTAB-22142 GTC 19 20 spectrophotometer RNA t=60m HCL AF2122/97 (A) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 5 Cy5 5 Cy5 t=60m HCL AF2122/97 (A2) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05388 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 60 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11317 MBAD_5420.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11317.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2 2 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:6770 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05388 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11317 MBAD_5419.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11317.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2 2 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:6789 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05498 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11214 MBAD_5465.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11214.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 AF2122/97 chemostat culture (C) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl chemostat culture AF2122/97 (C) P-MTAB-22142 GTC 12 20 spectrophotometer RNA t=15m HCL AF2122/97 (C) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 3 Cy5 3 Cy5 t=15m HCL AF2122/97 (C2) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05498 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 15 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11214 MBAD_5466.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11214.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 H37Rv chemostat culture (B) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl H37Rv chemostat culture (B) P-MTAB-22142 GTC 19 20 spectrophotometer RNA t=60m HCL H37Rv (B) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 5 Cy5 5 Cy5 t=60m HCL H37Rv (B2) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08458 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 60 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11286 MBAD_9100.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11286.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:8979 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08458 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11286 MBAD_9101.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11286.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 AF2122/97 chemostat culture (C) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl chemostat culture AF2122/97 (C) P-MTAB-22142 GTC 5 20 spectrophotometer RNA t=24h HCL AF2122/97 (C) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 3 Cy5 3 Cy5 t=24h HCL AF2122/97 (C1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05503 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 24 hours AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11211 MBAD_5455.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11211.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2 2 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:6793 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05503 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11211 MBAD_5454.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11211.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2 2 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:9115 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08515 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11236 MBAD_8865.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11236.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22140 roller bottle 1 6-10 100 aerobic Pyruvate based minimal media 37 AF2122/97 MM batch culture (C) P-MTAB-22142 GTC 10 20 spectrophotometer MM RNA AF2122/97 (C) total_RNA P-MTAB-22145 3 Cy5 3 Cy5 MM AF2122/97 (C1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08515 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 exponential growth bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11236 MBAD_8864.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11236.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 AF2122/97 chemostat culture (C) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl chemostat culture AF2122/97 (C) P-MTAB-22142 GTC 11 20 spectrophotometer RNA t=5m HCL AF2122/97 (C) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 3 Cy5 3 Cy5 t=5m HCL AF2122/97 (C1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05494 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 5 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11207 MBAD_5448.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11207.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2 2 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:6786 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05494 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11207 MBAD_5447.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11207.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 AF2122/97 chemostat culture (C) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl chemostat culture AF2122/97 (C) P-MTAB-22142 GTC 7 20 spectrophotometer RNA t=30m HCL AF2122/97 (C) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 3 Cy5 3 Cy5 t=30m HCL AF2122/97 (C2) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05501 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 30 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11227 MBAD_8836.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11227.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2 2 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:6791 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05501 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11227 MBAD_8837.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11227.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 AF2122/97 chemostat culture (A) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl AF2122/97 chemostat culture (A) P-MTAB-22142 GTC 19 20 spectrophotometer RNA t=60m HCL AF2122/97 (A) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 5 Cy5 5 Cy5 t=60m HCL AF2122/97 (A1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05387 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 60 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11189 MBAD_5418.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11189.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2 2 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:6769 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05387 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11189 MBAD_5417.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11189.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2 2 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:6697 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:05378 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11186 MBAD_5411.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11186.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 AF2122/97 chemostat culture (A) P-MTAB-22142 GTC 10 20 spectrophotometer SS RNA AF2122/97 (A) total_RNA P-MTAB-22145 3 Cy5 3 Cy5 SS AF2122/97 (A1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:05378 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 steady state bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11186 MBAD_5412.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11186.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22140 roller bottle 1 6-10 100 aerobic Pyruvate based minimal media 37 MM culture H37Rv (A) P-MTAB-22142 GTC 10 20 spectrophotometer MM RNA H37Rv (A) total_RNA P-MTAB-22145 3 Cy5 3 Cy5 MM H37Rv (A2) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08482 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv exponential growth bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11260 MBAD_8982.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11260.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:9074 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08482 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11260 MBAD_8983.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11260.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2 2 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:6766 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05383 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11184 MBAD_5407.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11184.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 AF2122/97 chemostat culture (A) P-MTAB-22139 10 aerobic 37 500 800-1100 rpm CMM MOD6 1 HCl AF2122/97 chemostat culture (A) P-MTAB-22142 GTC 9 20 spectrophotometer RNA t=15m HCL AF2122/97 (A) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 3 Cy5 3 Cy5 t=15m HCL AF2122/97 (A1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05383 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 15 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11184 MBAD_5408.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11184.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 AF2122/97 chemostat culture (A) P-MTAB-22142 GTC 10 20 spectrophotometer SS RNA AF2122/97 (A) total_RNA P-MTAB-22145 3 Cy5 3 Cy5 SS AF2122/97 (A2) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05379 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 steady state bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11187 MBAD_5414.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11187.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium bovis AF2122/97 gDNA (control) Mycobacterium bovis The MGED Ontology AF2122/97 mo wild_type mo pathogenic to humans, badgers and cattle mo P-MTAB-22141 roller bottle 1 6-10 100 aerobic 7H9 plus 0.05% Tween80 plus 40mM pyruvate 37 AF2122/97 culture P-MTAB-22143 91 100 spectrophotometer AF2122/97 gDNA genomic_DNA P-MTAB-22144 Cy3 2 2 Cy3 AF2122/97__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:6698 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 16 60 P-MTAB-22146 Hyb:05379 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes AF2122/97 bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11187 MBAD_5413.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11187.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22140 roller bottle 1 6-10 100 aerobic Pyruvate based minimal media 37 MM culture H37Rv (C) P-MTAB-22142 GTC 10 20 spectrophotometer MM RNA H37Rv (C) total_RNA P-MTAB-22145 3 Cy5 3 Cy5 MM H37Rv (C3) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08489 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv exponential growth bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11267 MBAD_9027.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11267.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:9081 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08489 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11267 MBAD_9028.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11267.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22139 800-1100 rpm 10 8 500 aerobic CMM MOD2 37 H37Rv chemostat culture (A) P-MTAB-22142 GTC 10 20 spectrophotometer SS RNA H37Rv (A) total_RNA P-MTAB-22145 3 Cy5 3 Cy5 SS H37Rv (A4) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08432 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv steady state bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11242 MBAD_8890.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11242.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip Mycobacterium tuberculosis H37Rv gDNA (control) Mycobacterium tuberculosis The MGED Ontology H37Rv mo wild_type mo pathogenic to humans The MGED Ontology P-MTAB-22144 Cy3 3 3 Cy3 H37Rv__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:8936 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 2 2 65 65 22 2 20 60 P-MTAB-22146 Hyb:08432 A-BUGS-31 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 0 minutes H37Rv bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:11242 MBAD_8889.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.raw.1.zip DBAD_11242.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-37/E-BUGS-37.processed.1.zip