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AccessionTitleTypeOrganismAssaysReleasedProcessedRawAtlas
The differential miRNA expression induces M2 macrophage polarization and mediates their profibrogenic effects
transcription profiling by array
Homo sapiens
13
12/07/2014
-
M2 cytokines alter the miRNA expression profile in macrophages
transcription profiling by array
Homo sapiens
9
12/07/2014
-
-
mRNA expression profile in IL-4-treated macrophages transfected with miR-142-5p ASO or miR-130a-3p mimics
transcription profiling by array
Homo sapiens
4
12/07/2014
-
Investigation into human Tra2 protein-dependent splicing in MDA-MB-231 cells using iCLIP and RNA-seq
other, RNA-seq of coding RNA
Homo sapiens
9
12/07/2014
-
-
-
Mutual reinforcement of pathophysiological host-microbe interactions that maintain steady state conditions of disease
transcription profiling by array
Mus musculus
16
12/07/2014
-
-
Comprehensive Analysis of Preeclampsia-Associated DNA Methylation in the Placenta
methylation profiling by array
Homo sapiens
48
12/07/2014
-
-
Transcriptome analysis of porcine immune organs following porcine cytomegalovirus infection
transcription profiling by array
Sus scrofa
2
12/07/2014
-
Probing the effect of promoters on noise in gene expression using thousands of designed sequences
other
synthetic construct
2
12/07/2014
-
-
next generation sequencing facilitates quantitative analysis of control and TKO liver transcriptomes
RNA-seq of coding RNA
Mus musculus
8
12/07/2014
-
-
Comparison of exon-wise expression profiling between normal and cancer tissues of human stomach
transcription profiling by array
Homo sapiens
60
12/07/2014
-
Transcription profiling by array of HeLa cells with shRNA knocked-down Myc expression
transcription profiling by array
Homo sapiens
5
11/07/2014
-
Transcription profiling by array of brain samples isolated from mice treated with a cumulative lipopolysaccharides (LPS) dose or LPS over four consecutive days
transcription profiling by array
Mus musculus
24
11/07/2014
-
-
Global transcript analysis of livers and/or jejunums of liver-specific Lrh-1 knockout as well as Lrh-1 K289R knockin mice
transcription profiling by array
Mus musculus
44
11/07/2014
-
Human perirenal adipose tissue
transcription profiling by array
Homo sapiens
10
11/07/2014
-
Expression data of LPS-stimulated macrophages in wild-type and LysM-Cre+;Akirin2fl/fl mice
transcription profiling by array
Mus musculus
6
11/07/2014
-
Global hepatic transcript data from LRH-1 hep+/+ and LRH-1 hep-/- livers
transcription profiling by array
Mus musculus
16
11/07/2014
-
Global hepatic transcript data from LRH-1 WT and LRH-1 K289R livers
transcription profiling by array
Mus musculus
14
11/07/2014
-
Global hepatic transcript data from LRH-1 WT and LRH-1 K289R jejunums
transcription profiling by array
Mus musculus
14
11/07/2014
-
Compare miRNA expression profiles of human iNSC, H9-NSC, fibroblast
transcription profiling by array
Homo sapiens
4
11/07/2014
-
Expression data from shMiwi/shCaf1 transduced mouse elongating spermatids
transcription profiling by array
Mus musculus
6
11/07/2014
-
The G Protein-coupled Receptor P2Y14 Influences Insulin Release and Smooth Muscle Function in Mice
RNA-seq of coding RNA
Mus musculus
20
11/07/2014
-
-
SM5-1-conjugated gold nanoparticles for antibody therapy in hepatocellular carcinoma
transcription profiling by array
Homo sapiens
6
11/07/2014
-
Real-time quantitative PCR analysis of microRNAS in islets of mice exposed to low-protein diet during gestation
transcription profiling by RT-PCR
Mus musculus
12
11/07/2014
-
-
Fibronectin regulates Wnt7a signaling and satellite cell expansion
transcription profiling by array, unknown experiment type
Mus musculus
1
11/07/2014
-
Characterization of the Rel2-regulated transcriptome and proteome of Anopheles stephensi identifies new anti-Plasmodium factors
transcription profiling by array
Anopheles stephensi
4
11/07/2014
-
Telomeric ORFs (TLOs) in pathogenic Candida spp. encode Mediator subunits that regulate the transcription of distinct subsets of genes
transcription profiling by array
Candida dubliniensis
33
11/07/2014
-
Monocytic cell differentiation from band-stage neutrophils under inflammatory conditions
transcription profiling by array
Homo sapiens
14
11/07/2014
-
Reprogramming of Endothelium Into Hematopoietic Progenitors by Defined Factors and Vascular Induction
RNA-seq of coding RNA
Homo sapiens
16
11/07/2014
-
-
RNA-Seq of ex vivo culture of circulating breast tumor cells
RNA-seq of coding RNA
Homo sapiens
6
11/07/2014
-
-
-
Trasncriptional response of human whole blood following TLR2 or TLR4 ligation in vitro
transcription profiling by array
Homo sapiens
70
11/07/2014
-
-
RNA-seq analysis in Cornea epithelial cells (CECs), skin epithelial cells (SECs), LSCs after knocking down PAX6 (3-D shPAX6 LSCs) and SESCs transduced with PAX6(3-D PAX6+ SESCs) upon 3-D differentiation
RNA-seq of coding RNA
Homo sapiens
8
11/07/2014
-
-
-
Sf1+ mouse adrenocortical cells vs. Wnt-responsive mouse adrenocortical cells
transcription profiling by array
Mus musculus
7
11/07/2014
-
Wnt/beta-catenin-signaling in immortalized mouse adrenocortical cell line ATCL7
transcription profiling by array
Mus musculus
8
11/07/2014
-
Circulating Tumor Cell Clusters are Oligoclonal Precursors of Breast Cancer Metastasis
RNA-seq of coding RNA
Homo sapiens
29
11/07/2014
-
-
-
Genome-wide transcriptome analysis of the dietary chemopreventive phytochemical sulforaphane on normal and prostate cancer cells.
RNA-seq of coding RNA
Homo sapiens
36
11/07/2014
-
-
-
Deep sequencing and analysis of small RNAs from the flowers of four Rosa
RNA-seq of non coding RNA
Rosa hybrid cultivar, Rosa rugosa
4
11/07/2014
-
-
Cdk11-Cyclin L controls the assembly of the RNA polymerase II Mediator
transcription profiling by array, ChIP-chip by tiling array
Schizosaccharomyces pombe
12
11/07/2014
-
Cdk11-Cyclin L controls the assembly of the RNA polymerase II Mediator [ChIP-chip]
ChIP-chip by tiling array
Schizosaccharomyces pombe
4
11/07/2014
-
Cdk11-Cyclin L controls the assembly of the RNA polymerase II Mediator [expression]
transcription profiling by array
Schizosaccharomyces pombe
8
11/07/2014
-
Generation of a transcriptome catalog for global analysis of gene expression in Ampelomyces quisqualis during mycoparasitization
transcription profiling by array
Ampelomyces quisqualis
11
11/07/2014
-
RNA-seq of coding RNA in bloodstream form of Trypanosoma brucei with or without depletion of histone H1 by RNA intereference to study if histone H1 is involved in transcription regulation
RNA-seq of coding RNA
Trypanosoma brucei brucei
4
10/07/2014
-
ENA
-
Transcriptomic analysis of F. oxysporum Δcon7-1 mutant during in vitro growth
transcription profiling by array
Fusarium oxysporum
6
10/07/2014
-
Multicilin drives centriole biogenesis via E2f proteins
ChIP-seq, RNA-seq of coding RNA
Xenopus laevis
22
10/07/2014
-
-
Genome-wide immunity studies in the rabbit: transcriptome variations in PBMCs after in vitro stimulation by LPS or PMA/ionomycin
transcription profiling by array
Oryctolagus cuniculus
24
10/07/2014
-
Site- and allele-specific de-silencing of polycomb repressive activity by insertional oncogenesis: a new recurrent mechanism of TAL1 activation in T-ALL
ChIP-seq
Homo sapiens
6
10/07/2014
-
-
Role of an archaeal PitA transporter in the copper and arsenic resistance of Metallosphaera sedula an extreme thermoacidophile
transcription profiling by array
Metallosphaera sedula, Metallosphaera sedula DSM 5348
5
10/07/2014
-
RNA-sequencing experiment: Treatment of MCF-7 breast cancer cells with the novel small molecule ZNA
RNA-seq of coding RNA
Homo sapiens
12
10/07/2014
-
-
-
DNA Methylation Analysis of Systemic Lupus Erythematosus
methylation profiling by array
Homo sapiens
434
10/07/2014
-
-
Profiling of human cancer breast cell lines (Affymetrix)
transcription profiling by array
Homo sapiens
58
10/07/2014
-
Analysis of Molecular Alterations in Oral Cell Lines
transcription profiling by array
Homo sapiens
10
10/07/2014
-
Early lineage restriction and regional segregation during mammalian heart development
transcription profiling by array
Mus musculus
8
10/07/2014
-
Comparing Reference-Based RNA-Seq Mapping Methods for Non-Human Primate Data
RNA-seq of coding RNA
Papio cynocephalus
12
10/07/2014
-
-
-
A Novel HDAC Complex in the Control of Transcription and Genome Stability
ChIP-seq
Schizosaccharomyces pombe
4
10/07/2014
-
-
RNA-seq in response to antibiotic stress (Acinetobacter baumannii 1592897)
RNA-seq of coding RNA
Acinetobacter baumannii 1592897
20
10/07/2014
-
-
RNA-seq in response to antibiotic stress (Acinetobacter baumannii 1564232)
RNA-seq of coding RNA
Acinetobacter baumannii 1564232
20
10/07/2014
-
-
RNA-seq in response to antibiotic stress (Acinetobacter baumannii 1428368)
RNA-seq of coding RNA
Acinetobacter baumannii 1428368
20
10/07/2014
-
-
RNA-seq in response to antibiotic stress (Acinetobacter baumannii 1207552)
RNA-seq of coding RNA
Acinetobacter baumannii 1207552
20
10/07/2014
-
-
RNA-seq in response to antibiotic stress (Acinetobacter baumannii 1000160)
RNA-seq of coding RNA
Acinetobacter baumannii 1000160
20
10/07/2014
-
-
RNA-seq in response to antibiotic stress (Acinetobacter baumannii 983759)
RNA-seq of coding RNA
Acinetobacter baumannii 983759
20
10/07/2014
-
-
RNA-seq in response to antibiotic stress (Acinetobacter baumannii 478810)
RNA-seq of coding RNA
Acinetobacter baumannii 478810
20
10/07/2014
-
-
RNA-seq in response to antibiotic stress (Acinetobacter baumannii 34654)
RNA-seq of coding RNA
Acinetobacter baumannii 34654
20
10/07/2014
-
-
Determining the M. smegmatis DosR regulon
transcription profiling by array
Mycobacterium smegmatis
4
10/07/2014
-
Bromodomain protein BRD4 is required for estrogen receptor-dependent transcription and enhancer activation
ChIP-seq, RNA-seq of coding RNA
Homo sapiens
38
10/07/2014
-
-
-
Bromodomain protein BRD4 is required for estrogen receptor-dependent transcription and enhancer activation [RNA-Seq]
RNA-seq of coding RNA
Homo sapiens
12
10/07/2014
-
-
-
Bromodomain protein BRD4 is required for estrogen receptor-dependent transcription and enhancer activation [ChIP-seq]
ChIP-seq
Homo sapiens
26
10/07/2014
-
-
-
MicroRNA Expression Profiles of Patients with Biochemically Recurrent Prostate Cancer
transcription profiling by array
Homo sapiens
40
10/07/2014
-
Transcription profiling by array of mice with Scap and Insig deletion from perinatal lung (E17.5-PN1)
transcription profiling by array
Mus musculus
24
10/07/2014
-
Genotyping of E14 mouse embryonic stem cells by sequencing
other, methylation profiling by high throughput sequencing
Mus musculus
2
10/07/2014
-
-
MethylC-Seq of idm2 single mutant and idm1idm2 double mutant
methylation profiling by high throughput sequencing
Arabidopsis thaliana
3
10/07/2014
-
-
C1q elicited macrophage gene expression
transcription profiling by array
Mus musculus
12
10/07/2014
-
Activation and repression by oncogenic Myc shapes tumour-specific gene expression profiles
ChIP-seq, RNA-seq of coding RNA
Homo sapiens, Mus musculus
66
10/07/2014
-
-
Global transcriptional profile of Salmonella enterica serovar Cerro 87 wild-type and its dpt genes deletion mutants at different growth state
transcription profiling by array
Salmonella enterica
24
09/07/2014
-
Intrinsic self-DNA triggers inflammatory disease dependent on STING
transcription profiling by array
Mus musculus
18
09/07/2014
-
-
Intrinsic self-DNA triggers inflammatory disease dependent on STING (II)
transcription profiling by array
Mus musculus
6
09/07/2014
-
-
Intrinsic self-DNA triggers inflammatory disease dependent on STING (I)
transcription profiling by array
Mus musculus
12
09/07/2014
-
-
Peripheral blood gene-expression in heavy vs. moderate drinkers exposed to three types of personalized imagery
transcription profiling by array
Homo sapiens
198
09/07/2014
-
-
miR-7 blockade alters E12.5 mouse cortical mRNA levels
RNA-seq of coding RNA
Mus musculus
6
09/07/2014
-
-
Fluorochrome-based definition of naturally occurring Foxp3+ regulatory T cells of intra- and extrathymic origin
transcription profiling by array
Mus musculus
8
09/07/2014
-
MicroRNA profiling of Acute Lymphoblastic Leukemia (ALL)
transcription profiling by array
Homo sapiens
16
09/07/2014
-
-
Genome-wide expression data of breast cancer samples
transcription profiling by array
Homo sapiens
154
09/07/2014
-
-
Affymetrix expression profile array data of miR-206 affected genes in left superior fat pads in canines
transcription profiling by array
Canis lupus familiaris
2
09/07/2014
-
Frequent Loss-of-Function Mutations in MLK4 Suppresses Signaling in the JNK-cJUN-p21/p15 Pathway to Promote Growth of Colon Cancer Cells
transcription profiling by array
Homo sapiens
24
09/07/2014
-
RNA-seq analysis of FSS1-dependent genes in Fusarium graminearum Z-3639
RNA-seq of coding RNA
Fusarium graminearum
6
09/07/2014
-
-
RNA sequencing of mice spermatozoa
RNA-seq of coding RNA
Mus musculus
1
09/07/2014
-
-
Transcription profiling by array of atmbd4, atmbd6 and atmbd11 mutants of Arabidopsis thaliana
transcription profiling by array
Arabidopsis thaliana
12
09/07/2014
-
Differential expression analysis for RNA-seq data between cardiac progenitor and uncommitted cells at day 4.75
RNA-seq of coding RNA, RNA-seq of non coding RNA
Mus musculus
12
09/07/2014
-
-
-
Gene expression profiles of PDX models with acquired resistance to endocrine treatments
transcription profiling by array
Homo sapiens
30
09/07/2014
-
Interaction between ROS and miR-451
transcription profiling by RT-PCR
Mus musculus
2
09/07/2014
-
-
Heterochromatin protein 1 secures survival and transmission of malaria parasites
transcription profiling by array
Plasmodium falciparum 3D7
22
09/07/2014
-
Study of stem cells and progenitor cells in K14 Snail mice
transcription profiling by array
Mus musculus
8
09/07/2014
-
Ethanol exposure disrupts extraembryonic microtubule cytoskeleton and embryonic blastomere cell adhesion, producing epiboly and gastrulation defects
transcription profiling by array
Danio rerio
14
09/07/2014
-
Assessment of the response of aerobic and anaerobic muscle tissues of gilthead sea bream (Sparus aurata L.) to caloric restriction
transcription profiling by array
Sparus aurata
34
09/07/2014
-
Genome-wide analysis reveals DNA methylation markers that varies with both age and obesity
methylation profiling by array
Homo sapiens
46
09/07/2014
-
-
Defining the mobilome in clinically important lineages of Enterococcus faecium and Enterococcus faecalis
comparative genomic hybridization by array
Enterococcus faecalis, Enterococcus faecium
63
08/07/2014
-
Microarray analysis indicates that vitamin A alters expression profiles of bovine intramuscular preadipocytes during adipogenesis
transcription profiling by array
Bos taurus
4
08/07/2014
-
Methylome analysis of normal kidney, nephrogenic rest and Wilms tumor
methylation profiling by array
Homo sapiens
95
08/07/2014
-
-
Genome-wide changes in the circadian transcriptional program in Synechococcus elongatus PCC 7942
transcription profiling by array
Synechococcus elongatus PCC 7942
12
08/07/2014
-
Establishment of trophoblast stem cells under defined culture conditions in mice
transcription profiling by array
Mus musculus
4
08/07/2014
-
High-resolution mapping of chromatin packaging in mouse embryonic stem cells and sperm
ChIP-seq
Mus musculus
17
08/07/2014
-
-
Expression data from FIT-039 or Flavopiridol compound treated HeLa cells
transcription profiling by array
Homo sapiens
3
08/07/2014
-
MethylPurify: tumor purity deconvolution and differential methylation detection from tumor DNA methylomes
methylation profiling by high throughput sequencing
Homo sapiens
12
08/07/2014
-
-
Epigenetic and transcriptional aberrations in human pluripotent stem cells reflect differences in reprogramming mechanisms [SNP array]
genotyping by array
Homo sapiens
21
08/07/2014
-
-
-
Epigenetic and transcriptional aberrations in human pluripotent stem cells reflect differences in reprogramming mechanisms
genotyping by array, RNA-seq of coding RNA, methylation profiling by array
Homo sapiens
56
08/07/2014
-
-
Epigenetic and transcriptional aberrations in human pluripotent stem cells reflect differences in reprogramming mechanisms [RNA-Seq]
RNA-seq of coding RNA
Homo sapiens
24
08/07/2014
-
-
-
Epigenetic and transcriptional aberrations in human pluripotent stem cells reflect differences in reprogramming mechanisms [methylation array]
methylation profiling by array
Homo sapiens
11
08/07/2014
-
-
Natural epigenetic polymorphisms lead to intraspecific variation in Arabidopsis gene imprinting
methylation profiling by high throughput sequencing, RNA-seq of coding RNA, RNA-seq of non coding RNA
Arabidopsis thaliana
56
08/07/2014
-
-
Natural epigenetic polymorphisms lead to intraspecific variation in Arabidopsis gene imprinting: small RNA-seq profiling in Arabidopsis thaliana Col, Ler, and Cvi parental and reciprocal F1 hybrid seeds
RNA-seq of non coding RNA
Arabidopsis thaliana
12
08/07/2014
-
-
Natural epigenetic polymorphisms lead to intraspecific variation in Arabidopsis gene imprinting: allele specific mRNA-seq expression profiling in Arabidopsis thaliana Col, Ler, and Cvi parental and reciprocal F1 hybrid embryo and endosperm
RNA-seq of coding RNA
Arabidopsis thaliana
30
08/07/2014
-
-
Natural epigenetic polymorphisms lead to intraspecific variation in Arabidopsis gene imprinting: BS-seq of Arabidopsis thaliana Col, Ler, and Cvi parental and reciprocal F1 hybrid embryo and endosperm
methylation profiling by high throughput sequencing
Arabidopsis thaliana
14
08/07/2014
-
-
VIB1, a link between glucose signaling and carbon catabolite repression, is essential for plant cell wall degradation by Neurospora crassa
RNA-seq of coding RNA
Neurospora crassa
9
08/07/2014
-
-
Unexpected complexity of the Escherichia coli K-12 transcriptome architecture revealed by single nucleotide resolution RNA sequencing
RNA-seq of coding RNA
Escherichia coli K-12
26
08/07/2014
-
-
Expanded identification and characterization of mammalian circular RNAs
RNA-seq of coding RNA
Homo sapiens
9
08/07/2014
-
-
-
DNA Topoisomerase 1α Promotes RNA-directed DNA Methylation and Histone Lysine 9 Dimethylation at Transposable Elements in Arabidopsis
methylation profiling by high throughput sequencing, RNA-seq of non coding RNA
Arabidopsis thaliana
15
08/07/2014
-
-
DNA Topoisomerase 1a Promotes RNA-directed DNA Methylation and Histone Lysine 9 Dimethylation at Transposable Elements in Arabidopsis [RNA-Seq]
RNA-seq of non coding RNA
Arabidopsis thaliana
5
08/07/2014
-
-
Genome-wide DNA methylation patterns in pancreatic ductal adenocarcinoma (PDAC)
methylation profiling by array
Homo sapiens
196
08/07/2014
-
-
Sequencing and genome-wide mapping of 146 bp mono-nucleosomal DNA from human and bovine sperm
ChIP-seq
Bos taurus, Homo sapiens
4
08/07/2014
-
-
Mutation of bphP/bphR Decreases the Resistance of D. radiodurans to DNA-damaging Agents
transcription profiling by array
Deinococcus radiodurans R1
2
07/07/2014
-
Deinococcus radiodurans R1 Cells was treated with MMC (5 μg/ml) : Control treated with MMC (5 μg/ml) vs. bphPR deletion mutant treated with MMC (5 μg/ml)
transcription profiling by array
Deinococcus radiodurans R1
1
07/07/2014
-
Deinococcus radiodurans R1 Cells: Control vs. bphPR deletion mutant
transcription profiling by array
Deinococcus radiodurans R1
1
07/07/2014
-
Environmentally Induced Epigenetic Transgenerational Inheritance of Altered Sertoli Cell Transcriptome and Epigenome: Molecular Etiology of Male Infertility
transcription profiling by array, methylation profiling by array
Rattus norvegicus
9
07/07/2014
-
Environmentally Induced Epigenetic Transgenerational Inheritance of Altered Sertoli Cell Transcriptome and Epigenome: Molecular Etiology of Male Infertility [NimbleGen]
methylation profiling by array
Rattus norvegicus
3
07/07/2014
-
-
Molecular mechanism underlying increased ischemic damage in the ALDH2*2 genetic polymorphism using a human iPSC model system
RNA-seq of coding RNA
Homo sapiens
8
07/07/2014
-
-
-
Gene expression in normal and tumor samples from patients with HNSCC
transcription profiling by array
Homo sapiens
30
07/07/2014
-
Stromal and epithelial changes in breast cancer following endocrine treatment
transcription profiling by array
Homo sapiens
10
07/07/2014
-
Genome-wide analysis in Human Colorectal Cells reveals Ischaemia-mediated expression of motility genes via DNA hypomethylation
transcription profiling by array, comparative genomic hybridization by array, methylation profiling by array
Homo sapiens
20
07/07/2014
-
Genome-wide analysis in Human Colorectal Cells reveals Ischaemia-mediated expression of motility genes via DNA hypomethylation (SNP array)
comparative genomic hybridization by array
Homo sapiens
2
07/07/2014
-
-
Genome-wide analysis in Human Colorectal Cells reveals Ischaemia-mediated expression of motility genes via DNA hypomethylation (promoter array)
methylation profiling by array
Homo sapiens
9
07/07/2014
-
-
Genome-wide analysis in human colorectal cancer cells reveals ischemia-mediated expression of motility genes via DNA hypomethylation (expression)
transcription profiling by array
Homo sapiens
9
07/07/2014
-
Time course gene expression profiling of mouse mammary gland TEB and duct cells throughout branching morphogenesis
transcription profiling by array
Mus musculus
50
07/07/2014
-
Genome-wide transcriptome analysis of neuron-enriched DRG cultures exposed to Wnt3a
transcription profiling by array
Mus musculus
4
07/07/2014
-
-
RNA-seq analysis of vorinostat-resistant HCT116 cells following gene knockdown of potential vorinostat-resistance candidate genes
RNA-seq of coding RNA
Homo sapiens
45
07/07/2014
-
-
-
Evolutionary conserved mutations in PhoPR attenuate the virulence of animal-adapted tuberculosis strains for humans
transcription profiling by array
Mycobacterium tuberculosis
8
07/07/2014
-
Mycobacterium tuberculosis transcriptional responses to acidic pH and carbon source
RNA-seq of coding RNA
Mycobacterium tuberculosis
8
07/07/2014
-
-
-
Transcriptional response to cotton worm feeding in resistant and susceptible soybean lines
transcription profiling by array
Glycine max
12
07/07/2014
-
Selective transcriptional regulation by Myc in cellular growth control and lymphomagenesis
ChIP-seq, RNA-seq of coding RNA
Homo sapiens, Mus musculus
94
07/07/2014
-
-
Selective transcriptional regulation by Myc in cellular growth control and lymphomagenesis [RNA-Seq]
RNA-seq of coding RNA
Mus musculus
29
07/07/2014
-
-
Selective transcriptional regulation by Myc in cellular growth control and lymphomagenesis [ChIP-Seq]
ChIP-seq
Homo sapiens, Mus musculus
60
07/07/2014
-
-
Selective transcriptional regulation by Myc in cellular growth control and lymphomagenesis [DNAse-Seq]
ChIP-seq
Mus musculus
5
07/07/2014
-
-
DNA Topoisomerase 1α Promotes RNA-directed DNA Methylation and Histone Lysine 9 Dimethylation at Transposable Elements in Arabidopsis [Bisulfite-Seq]
methylation profiling by high throughput sequencing
Arabidopsis thaliana
10
07/07/2014
-
-
Genes regulated/modulated by jagged1 in endothelial cells during inflammation
transcription profiling by array
Homo sapiens
12
07/07/2014
-
-
Fezf2 overexpression in murine cortical progenitors in vivo
transcription profiling by array
Mus musculus
14
06/07/2014
-
E14.5 mouse cortical neurospheres in response to Fezf2 over-expression
RNA-seq of coding RNA
Mus musculus
4
06/07/2014
-
-
-
Role of Polycomb group proteins in the DNA damage response – a reassessment
ChIP-seq
Homo sapiens
6
06/07/2014
-
-
Comparison of gene expression in S.aureus strains with different triclosan sensitivities
transcription profiling by array
staphylococcus aureus
48
05/07/2014
-
Gene expression (RNA-Seq) analysis of primary human T cells reveals novel genes associated with Th2 memory differentiation and asthma susceptibility
RNA-seq of coding RNA
Homo sapiens
49
05/07/2014
-
-
Epigenomic analysis of primary human T cells reveals novel enhancers associated with Th2 memory differentiation and asthma susceptibility
ChIP-seq, RNA-seq of coding RNA
Homo sapiens, Mus musculus
195
05/07/2014
-
-
Reproducibility of standard and micro-scaled H3K4me2 ChIP-Seq assay in mouse derived lymphoblastic cell line (D10.G4.1 cells, ATCC)
ChIP-seq
Mus musculus
26
05/07/2014
-
-
Epigenomic analysis of primary human T cells reveals novel enhancers associated with Th2 memory differentiation and asthma susceptibility (3 cell types)
ChIP-seq
Homo sapiens
120
05/07/2014
-
-
-
Genome-wide mapping of miRNAs expressed in embryonic stem cells and pluripotent stem cells generated by different reprogramming strategies.
RNA-seq of non coding RNA
Mus musculus
12
05/07/2014
-
-
-
Endogenous small-noncoding RNAs and their roles in cold response and stress acclimation in Cassava
RNA-seq of non coding RNA
Manihot esculenta, Ricinus communis
6
05/07/2014
-
-
The Histone Variant H2A.W Defines Heterochromatin and Promotes Chromatin Condensation in Arabidopsis
ChIP-seq, methylation profiling by high throughput sequencing, RNA-seq of coding RNA
Arabidopsis thaliana
10
05/07/2014
ENA
-
Transcriptional responses in liver upon acute CCl4 intoxication
transcription profiling by array
Mus musculus
46
04/07/2014
-
Mapping and manipulating the M. tuberculosis transcriptome using a transcription factor overexpression-derived regulatory network
transcription profiling by array
Mycobacterium tuberculosis H37Rv
698
04/07/2014
-
Effects of caffeine ingestion in Drosophila melanogaster male thorax and abdomen.
transcription profiling by array
Drosophila melanogaster
6
04/07/2014
-
Axin2/Runx2 mouse calvaria expression
transcription profiling by array
Mus musculus
32
04/07/2014
-
Axin2/Runx2 mouse calvaria gene expression
transcription profiling by array
Mus musculus
16
04/07/2014
-
-
Translational profiling in multiple myeloma to identify novel therapeutic targets
transcription profiling by array
Homo sapiens
16
04/07/2014
-
-
Axin2/Runx2 mouse calvaria microRNA expression
transcription profiling by array
Mus musculus
16
04/07/2014
-
Effect of acute and chronic social stress on hippocampal transcriptome in mice.
transcription profiling by array
Mus musculus
24
04/07/2014
-
A novel approach to identify genes that determine grain protein deviation in cereals
transcription profiling by array
Triticum aestivum
161
04/07/2014
-
Rhodobacter sphaeroides 2.4.1 pSurS versus pBBR under singlet oxygen stress.
transcription profiling by array
Rhodobacter sphaeroides 2.4.1
2
04/07/2014
-
Differentiation of human neural precursor cells from pluripotent stem cells
transcription profiling by array
Homo sapiens
10
04/07/2014
-
-
Analysis of tumor- and stroma-supplied proteolytic networks in different metastatic tumor microenvironments identifies a critical role for cathepsin S in brain metastasis
transcription profiling by array
Homo sapiens, Mus musculus
54
04/07/2014
-
Genomic variation and adaptation in fragmented landscapes
RNA-seq of coding RNA
Melitaea cinxia
174
04/07/2014
ENA
-
Gene expression accompanying the promotion of hepatocellular carcinoma by intestinal microbiota and Tlr4 in mice.
transcription profiling by array
Mus musculus
15
04/07/2014
-
Integrin_a11_knockout
transcription profiling by array
 
12
03/07/2014
-
Dose-dependent hepatic transcriptional responses in Atlantic salmon (Salmo salar) exposed to sublethal doses of gamma radiation
transcription profiling by array
Salmo salar
16
03/07/2014
-
Murine liver tissues: WT and Wip1 KO mice after Partial Hepatectomy at 24h and 36 h.
transcription profiling by array
Mus musculus
2
03/07/2014
-
Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and dKO round spermatids Transcriptomes
RNA-seq of coding RNA
Mus musculus
4
03/07/2014
-
-
-
Analysis of conceptuses from day 14 pregnancy rambouillet cross ewes
ChIP-seq, RNA-seq of coding RNA
Ovis aries
6
03/07/2014
-
-
-
PPARG regulated genes in the day 14 ovine conceptus
ChIP-seq
Ovis aries
2
03/07/2014
-
-
-
RNA seq analysis of day of pregnancy 14 ovine conceptuses
RNA-seq of coding RNA
Ovis aries
4
03/07/2014
-
-
-
miRNA expression profile of cells and exosomes
transcription profiling by array
Homo sapiens
8
03/07/2014
-
Gene silencing triggers Polycomb Repressive Complex 2 recruitment to CpG islands genome-wide
ChIP-seq, RNA-seq of coding RNA
Mus musculus
74
03/07/2014
-
-
Gene silencing triggers Polycomb Repressive Complex 2 recruitment to CpG islands genome-wide [ChIP-seq_Input]
ChIP-seq
Mus musculus
1
03/07/2014
-
-
Gene silencing triggers Polycomb Repressive Complex 2 recruitment to CpG islands genome-wide [ChIP-seq_differentiation]
ChIP-seq
Mus musculus
2
03/07/2014
-
-
Gene silencing triggers Polycomb Repressive Complex 2 recruitment to CpG islands genome-wide [ChIP-seq_drugs]
ChIP-seq
Mus musculus
20
03/07/2014
-
-
-
Gene silencing triggers Polycomb Repressive Complex 2 recruitment to CpG islands genome-wide [iTC-seq_drugs]
RNA-seq of coding RNA
Mus musculus
20
03/07/2014
-
-
-
Gene silencing triggers Polycomb Repressive Complex 2 recruitment to CpG islands genome-wide [RNA-seq_differentiation]
RNA-seq of coding RNA
Mus musculus
16
03/07/2014
-
-
-
Gene expression signatures for breast cancer cells metastatic to bone marrow
transcription profiling by array
Homo sapiens
4
03/07/2014
-
Genome-wide analysis of MEF2-dependent gene expression in human NSCs
transcription profiling by array
Homo sapiens
6
03/07/2014
-
-
Gene expression profiles of induced cardiomyocytes(iCMs)
transcription profiling by array
Homo sapiens, Mus musculus
15
03/07/2014
-
Gene expression profiles of mouse embryonic fibroblasts (MEFs), induced cardiomyocytes (iCMs) and heart
transcription profiling by array
Mus musculus
10
03/07/2014
-
Gene expression profile of human cardiac fibroblasts (HCFs), induced cardiomyocytes (iCMs), and heart
transcription profiling by array
Homo sapiens
5
03/07/2014
-
DUX4-induced gene expression is the major molecular signature in FSHD skeletal muscle
RNA-seq of coding RNA
Homo sapiens
38
03/07/2014
-
-
-
Heterochromatin-associated interactions of Drosophila HP1 with dADD1, HIPP1, and repetitive RNAs
ChIP-seq, RNA-seq of coding RNA
Drosophila melanogaster
27
03/07/2014
-
-
Gene expression for transformed YAMC clones
transcription profiling by array
Mus musculus
12
03/07/2014
-
-
Effects of Lipocalin 2 (Lcn2), iron, and the bacterial siderophore Enterobactin on A549 respiratory cell gene expression
transcription profiling by array
Homo sapiens
24
03/07/2014
-
Genome wide profiling of MBD2 binding
ChIP-seq, methylation profiling by high throughput sequencing, RNA-seq of coding RNA
Homo sapiens
17
03/07/2014
-
-
DNMT3L promotes quiescence in postnatal spermatogonial progenitor cells
RNA-seq of coding RNA
Mus musculus
2
03/07/2014
-
-
SUMOylation modulates the transcriptional activity of androgen receptor in a target gene and pathway selective manner.
ChIP-seq, RNA-seq of coding RNA
Homo sapiens
38
03/07/2014
-
-
Genome-wide analysis of androgen receptor (AR) SUMOylation effects on gene expression (HEK293).
transcription profiling by array
Homo sapiens
12
03/07/2014
-
-
Genome-wide analysis of SUMOylation effects on androgen receptor (AR) binding in PC-3 cells (ChIP-seq)
ChIP-seq
Homo sapiens
8
03/07/2014
-
-
-
Genome-wide analysis of SUMOylation effects on androgen receptor (AR) binding in HEK293 cells (ChIP-seq)
ChIP-seq
Homo sapiens
6
03/07/2014
-
-
-
Genome-wide analysis of androgen receptor (AR) SUMOylation effects on gene expression (PC-3).
transcription profiling by array
Homo sapiens
12
03/07/2014
-
-
C. Elegans expression: toxic vs. adequate vs. low selenium
transcription profiling by array
Caenorhabditis elegans
5
03/07/2014
-
Elevated MAOA Expression Enhances Tumor Growth In-vivo and Alters Transcriptional Profiles
transcription profiling by array
Homo sapiens
4
03/07/2014
-
mRNA-Seq and microRNA-Seq whole-transcriptome analysis of rhesus monkey ESC neural differentiation revealed the potential rosette neural stem cell regulators
RNA-seq of coding RNA, RNA-seq of non coding RNA
Macaca mulatta
8
03/07/2014
-
-
-
Regulation of Ptch1 expression in the limb
ChIP-seq
Mus musculus
2
03/07/2014
-
-
Stress acclimation in Cassava
RNA-seq of coding RNA, RNA-seq of non coding RNA
Manihot esculenta, Ricinus communis
6
03/07/2014
-
-
MicroRNA regulation of monocyte inflammatory and metabolic networks in an in vivo infection model
RNA-seq of coding RNA, RNA-seq of non coding RNA
Bos taurus
200
03/07/2014
-
-
-
MicroRNA regulation of the bovine local and systemic monocyte transcriptional responses to an in vivo Streptococcus uberis challenge
RNA-seq of coding RNA
Bos taurus
100
03/07/2014
-
ENA
-
MicroRNAs are amplifiers of monocyte inflammatory networks and repressors of metabolism
RNA-seq of non coding RNA
Bos taurus
100
03/07/2014
-
ENA
-
Genome-wide analysis of Staufen1-bound mRNAs in prometaphase
transcription profiling by array
Homo sapiens
6
03/07/2014
-
-
Genome-wide analysis of mRNAs expression in prometaphase
transcription profiling by array
Homo sapiens
6
03/07/2014
-
-
Gene expression analysis in macrophages stimulated 18 h with Adiponectin
transcription profiling by array
Mus musculus
3
03/07/2014
-
Profiling premalignant lesions in lung squamous cell carcinomas identifies mechanisms involved in stepwise carcinogenesis
RNA-seq of coding RNA
Homo sapiens
24
03/07/2014
-
ENA
-
Characterization of miRNomes in acute and chronic myeloid leukemia cells
RNA-seq of non coding RNA
Homo sapiens
3
03/07/2014
-
ENA
-
Transcription profiling by array of induced pluripotent cell clones expressing either wild-type or mutated CDKL5 gene to study the gene's role in transcriptional regulation
transcription profiling by array
Homo sapiens
8
02/07/2014
-
-
Expression data from livers from Sco1 liver-specific KO and WT adult mice
transcription profiling by array
Mus musculus
8
02/07/2014
-
Expression data from primary human leukocytes (peropheral blood mononuclear cells, PBMC) cultured in vitro with HIV-1MN, HIV-2NIH-Z, CpG-A ODN or media alone
transcription profiling by array
Homo sapiens
24
02/07/2014
-
Nuclear stability and transcriptional directionality separate functionally distinct RNA species
RNA-seq of coding RNA
Homo sapiens
9
02/07/2014
-
-
Gene expression levels in Rhizosphere Originating Biocontrol Strain Pseudomonas aeruginosa M18 producing different amounts of phenazine-1-carboxylate acid (PCA)
transcription profiling by array
Pseudomonas aeruginosa
9
02/07/2014
-
Expression analysis of colorectal cancer cell line SW480 expressing FOXC2
transcription profiling by array
Homo sapiens
6
02/07/2014
-
Expression profiling of Col-0 treated with Psm:AvrRpt2
transcription profiling by array
Arabidopsis thaliana
6
02/07/2014
-
Global characterization of the oocyte-to-embryo transition in C. elegans uncovers a novel mRNA turnover mechanism
RNA-seq of coding RNA
Caenorhabditis elegans
8
02/07/2014
-
-
-
Cryptorchidism in the orl rat is associated with muscle patterning defects in the fetal gubernaculum and altered hormonal signaling
transcription profiling by array
Rattus norvegicus
26
02/07/2014
-
Systemic inflammatory response to smoking in chronic obstructive pulmonary disease: evidence of a gender effect
transcription profiling by array
Homo sapiens
106
02/07/2014
-
Genomic Microarray of Rat Alveolar Type 2 cells Following Chronic Ethanol Ingestion
transcription profiling by array
Rattus norvegicus
7
02/07/2014
-
Role of LDB1 in the transition from chromatin looping to transcription activation
RNA-seq of coding RNA
Mus musculus
12
02/07/2014
-
-
Differentiation state-specific mitochondrial dynamic regulatory networks are revealed by global transcriptional analysis of the developing chicken lens.
RNA-seq of coding RNA
Gallus gallus
8
02/07/2014
-
-
-
Comparative RNA-sequencing analysis of myocardial and circulating small RNAs in human heart failure and their utility as biomarkers
transcription profiling by array, RNA-seq of coding RNA
Homo sapiens
209
02/07/2014
-
-
Comparative RNA-sequencing analysis of myocardial and circulating small RNAs in human heart failure and their utility as biomarkers [small RNA-seq]
RNA-seq of coding RNA
Homo sapiens
185
02/07/2014
-
-
-
Effect of LMP7 and MECL1-immunoproteasome subunits deficiency on the transcriptome of mouse bone marrow-derived dendritic cells
RNA-seq of coding RNA
Mus musculus
32
02/07/2014
-
-
Comparative RNA-sequencing analysis of myocardial and circulating small RNAs in human heart failure and their utility as biomarkers [array]
transcription profiling by array
Homo sapiens
24
02/07/2014
-
-
Unraveling the Sox4-orchestrated pro-B cell differentiation program: Intricate roles of the RAG and CK1e genes
ChIP-seq, transcription profiling by array
Mus musculus
14
02/07/2014
-
-
Unraveling the Sox4-orchestrated pro-B cell differentiation program: Intricate roles of the RAG and CK1ε genes (ChIP-Seq)
ChIP-seq
Mus musculus
2
02/07/2014
ENA
-
Unraveling the Sox4-orchestrated pro-B cell differentiation program: Intricate roles of the RAG and CK1ε genes (RNA array)
transcription profiling by array
Mus musculus
12
02/07/2014
-
-
KrasG12D partially compensates for the loss of beta-catenin in MLL-AF9 AML
transcription profiling by array
Mus musculus
12
02/07/2014
-
A comprehensive survey of degradation and 3′ end modification of plant microRNAs by deep sequencing
RNA-seq of non coding RNA
Populus trichocarpa
2
02/07/2014
ENA
-
Genomic responses in blood during acute human anaphylaxis
transcription profiling by array
Homo sapiens
36
02/07/2014
-
The impact of miR-542-3p on gene expression profile in U2OS cells
transcription profiling by array
Homo sapiens
6
02/07/2014
-
-
Transcription profiling by array of skeletal muscles of flies with muscle-specific overexpression of Foxo or Mnt
transcription profiling by array
Drosophila melanogaster
9
02/07/2014
-
ChIP-seq and RIP-seq for SCML2 and SCML2 mutants in 293T-REx and K562 cells
other, ChIP-seq
Homo sapiens
49
02/07/2014
-
-
RIP-seq for SCML2 and SCML2 mutants in 293T-REx and K562 cells
other
Homo sapiens
10
02/07/2014
ENA
-
ChIP-seq for SCML2 and SCML2 mutants in 293T-REx and K562 cells
ChIP-seq
Homo sapiens
39
02/07/2014
ENA
-
Transcription profiling by array of human ovary cell cultures stimulated with embryo-conditioned media
transcription profiling by array
Homo sapiens
12
01/07/2014
-
Affymetrix MOE430v2 vs Mouse PancChip 5.0 comparison
transcription profiling by array
Mus musculus
16
01/07/2014
-
Long-term adaptation to hypoxic conditions - Febit transcriptome analysis
transcription profiling by array
Aspergillus fumigatus
6
01/07/2014
-
MetaMeta
transcription profiling by array
Mus musculus
6
01/07/2014
-
-
Comparison of drb2 mutant and wild-type shoot apex gene expression in Arabidopsis thaliana
comparative genomic hybridization by array
Arabidopsis thaliana
6
01/07/2014
-
-
Laf4/Aff3 is required for normal neuronal migration
transcription profiling by array
Mus musculus
8
01/07/2014
-
-
Flagellin_Illumina_Microarray
transcription profiling by array
Homo Sapiens
36
01/07/2014
-
-
The genomic landscape of compensatory evolution in yeast
transcription profiling by array
Saccharomyces cerevisiae
34
01/07/2014
-
RNA-seq of coding RNA from cluster roots (pre-emergent, juvenile and mature) from Lupinus albus grown for 20 days under phosphorus-deficiency
RNA-seq of coding RNA
Lupinus albus
3
01/07/2014
-
ENA
-
RNAseq of S. stercoralis PV001 strain L3i activation
RNA-seq of coding RNA
Strongyloides_stercoralis
21
01/07/2014
-
ENA
-
Transcription profiling by array of E11.5 and E12.5 mouse embryonic kidneys to identify target genes of Sall1
transcription profiling by array
Mus musculus
12
01/07/2014
-
Transcription profilling by array of human neural progenitor cells treated with tacrolimus or cyclosporin
transcription profiling by array
Homo sapiens
9
01/07/2014
-
Transcriptional regulation of endocrine cell differentiation by Insm1
RNA-seq of coding RNA
Mus musculus
18
01/07/2014
ENA
-
Transcription profiling by array of Sertoli cells to better understand the AR signaling pathways and identify androgen regulated genes
transcription profiling by array
Mus musculus
4
01/07/2014
-