ArrayExpress

Transcription profiling by array of mouse postnatal myocardium collected 4 weeks after sham or TAC surgery from both tamoxifen-treated Hand2f/f (wild type) and MCM-Hand2f/f (knock out) mice to identify Hand2 target genes

Methylation profiling by array of subcutaneous fat derived from 856 TwinsUK participants

Transcription profiling by array of xenografted tumors derived from human ovarian cell line model A2780 and its cisplatin resistant variant A2780cis

Transcription profiling by array of human glioma samples of different tumour types and grades to identify gene signatures associated with these categories

RNA-seq of coding and non-coding rRNA-depleted total RNA from platelets of three individuals to identif genes expressed in unstimulated circulating platelets

Transcription profiling by array of liver samples from FXR+/+ (wt) and liver-specific FXR KO (lKO) mice

Microrna expression (Agilent McroRNA Array)

Transcription profiling by array of mouse neural progenitor cells isolated from forebrains of E13.5 dpc mouse embryos with wild-type Miz1 or homozygous for Miz1-delta-POZ

Transcription profiling by array of Miz1 POZ-domain knock-out mice brain samples

Transcription profiling by array of lung tissue from dogs with spontaneous canine idiopathic pulmonary fibrosis and normal controls

DNA:RNA immunoprecipitation and tiling microarray (DRIP-chip) to obtain the genome-wide distribution of DNA:RNA hybrid prone loci in Saccharomyces cerevisiae

Transcription profiling by array of human tubular epithelial cells treated with cisplatin in the presence or absence of endothelial progenitor cells-derived extracellular vesicles

Transcription profiling by array of Arabidopsis thaliana wild type and atglr3.3 mutant seedlings treated with CK buffer containing GSH and Glu

Transcription profiling by high throughput sequencing of rhesus macaques vaccinated with two regimens to define correlates of protection against repeated low dose simian immunodeficiency virus challenges

miRNA expression profilling in Human African Trypanosomiasis

Highly efficient methane biocatalysis revealed in a methanotrophic bacterium

Characterization of the genetic mouse model of non-small cells lung cancer p53R172H∆g/KrasG12D

Transcription factor binding in human cells occurs in dense clusters formed around cohesin anchor sites [Validation Set]

Real-time quantitative PCR analysis of human colon cancer cells for autophagy related genes

Real-time quantitative PCR analysis of human colon cancer cells for UPR related genes

Ago2

mRNA-seq of Drosophila Ago2 mutants

ChIP-seq of endogenous Ago2 in Drosophila S2 cells

Expression data from Ctla4-/- and DKO CD4+ Tconv cells

Molecular classification of mature aggressive B cell lymphoma using digital multiplexed gene expression on formalin-fixed paraffin-embedded biopsy specimens [Affymetrix]

Structural and functional characterization of the N-terminus of Schizosaccharomyces pombe Cwf10

Genes affected by Ret activation during estrogen stimulation or inhibition in MCF7/Aro cells

Transcription profiling by array of yeast samples where Tho2 protein was tagged with a TAP tag and compared to an untagged wildtype strain of the same background

Genotyping by array of human BIN-67 small cell ovarian carcinoma to investigate genomic stability

Transcription profiling by array of human BIN-67 small cell ovarian carcinoma to investigate gene expression

Effect of BET inhibitors (JQ1 and RVX-208) on gene expression in HepG2 cells

3D Expression Data of Myc and Myc phospho-mutants

p300 is a preferred client protein for Nuclear Chaperones

Genome wide ChIP-Seq profiles of p300 and CBP in control and cells expressing HSP70K71E

The Gene Expression Profile of Peripheral Blood Mononuclear Cells from EV71-Infected Rhesus Neonates

Autoimmune antigen and serum factor antigen reactivity in a cohort of patients with mycobacterium infection shown previously to be positive and negative for IgG autoantibodies to IFN-gamma.

Autoimmune antigen and serum factor antigen reactivity in a cohort of patients with autoimmune polyendocrinopathy syndrome type 1(APS-1) and healthy controls.

Autoimmune antigen and serum factor antigen reactivity in a cohort of patients with systemic lupus erythematosus (SLE) and healthy controls from the ABCoN cohort.

RNA sequencing of Kineococcus radiotolerans transcriptome in response to ionizing radiation

Global gene expression changes in patient-derived CML cell line K562 after short- and long-term BCR-ABL kinase inhibition.

The polycomb protein Ezh2 regulates differentiation and plasticity of CD4 T helper type-1 and type-2 cells [ChIP-seq]

Cavin-3 Dictates the Balance Between ERK and Akt Signaling

Drug Synergy Screen and Network Modeling in Dedifferentiated Liposarcoma (DDLS)

Drug Synergy Screen and Network Modeling in Dedifferentiated Liposarcoma (DDLS) part 2

Drug Synergy Screen and Network Modeling in Dedifferentiated Liposarcoma (DDLS) part 1

Global mRNA gene expression analysis profiling control HEK293 cell and cells expressing HSP70K71E

Gene expression analysis of induced pluripotent stem cells from aneuploid chromosomal syndromes

Gene regulation by CBP-p300 in the lens placode - E9.5

High-throughput sequencing for microRNAs in uninjured and regenerating newt hearts

Epe1 recruits the BET family bromodomain protein Bdf2 to establish heterochromatin boundaries

Microarray Analysis of microRNA Expression during Notophthalmus viridescens (red-spotted newt) heart regeneration

A Myc transcriptional program that is independent of EMT drives a poor prognosis tumor-propagating phenotype in HER2+ breast cancer

Brain transcriptomics of honey bee parasitized by Varroa destructor or Nosema ceranae

Expression data from volatile treated and insect damaged Arabidopsis thaliana

ChIP-chip by array was performed to examine the genome-wide association of Bye1 with chromatin in vivo

Transcription profiling by RT-PCR of lymphocytes from individuals exposed to styrene and unexposed controls to identify a panel of genes involved in styrene exposure

Transcriptional profile exhibited by peripheral blood mononuclear cells from healthy subjects

Transcriptional profile exhibited by peripheral blood mononuclear cells from type 1 diabetes mellitus patients

MicroRNA profiling by array of peripheral blood mononuclear cells from healthy patients

Targeted DNA demethylation using TALE-TET1 fusion proteins

Gene expression of SUM159 breast cancer cell line expressing microRNA--203

Ablation of coactivator Med1 switches the cell fate of dental epithelia to that generating hair

Ablation of coactivator Med1 switches the cell fate of dental epithelia to that generating hair [mixed stage]

Ablation of coactivator Med1 switches the cell fate of dental epithelia to that generating hair [maturation stage]

Ablation of coactivator Med1 switches the cell fate of dental epithelia to that generating hair [CL stage]

Histone posttranslational modifications and cell fate determination: Lens induction requires the lysine acetyltransferases CBP and p300

Gene regulation by CBP-p300 in the lens placode - E10.5

Gene regulation by Pax6 in the lens placode - E10.25

Gene expression in human healthy control and ISCU myopathy patient muscle biopsies

Expression and regulation of lincRNAs during T cell development and differentiation

Genome-wide gene expression analysis on tibialis anterior muscle from nebulin SH3 domain deleted (Neb∆SH3) mice

Determine the effects of mTORC1 inhibition by rapamycin on mouse liver transcriptome

Expression data from mouse model using targeted deletion of hepatic RICTOR (Albumin-Cre Rictor LoxP/LoxP)

Inhibition of RUNX2 transcriptional activity blocks the proliferation, migration and invasion of epithelial ovarian carcinoma cells

Fsh controls gene expression in fish both independently of and through steroid mediation

Chromosome-wide profiling of X-inactivation status and epigenetic regulation in opossum fetal brain and placenta

Chromosome-wide profiling of X-inactivation status and epigenetic regulation in fetal brain

Natural cardiogenesis-based template predicts cardiogenic potential of induced pluripotent stem cell lines

Gene expression analysis in wild-type and OsGRX8 overexpression line in response to various treatments

H2AZ extended acidic patch is necessary for formation specialized chromatin states in ESCs

H2AZ extended acidic patch is necessary for formation specialized chromatin states in ESCs [RNA-Seq]

H2AZ extended acidic patch is necessary for formation specialized chromatin states in ESCs [ChIP-Seq]

Influence of 3,5,3'-Triiodothyronine (T3) on differentiating progenitor cells of the enteric nervous system (ENS)

Genome-wide small RNA profiling and mRNA profiling of Xenopus embryos

Genome-wide analysis of Crohn's disease and ulcerative colitis biopsy samples.

Expression data of Xrx1 gain and loss of function experiments from early Xenopus laevis embryos (stage 13)

Functional analysis of Arabidopsis MYB106 and WIN1/SHN1 transcription factors

Transcriptomes of 35S:MYB106VP16 and wild-type Arabidopsis seedling

Transcriptomes of 35S:WIN1 and vector-control Arabidopsis seedling

Transcriptomes of 35S:MYB106SRDX, 35S:WIN1SRDX and wild-type Arabidopsis seedling

Syndecan-2 and apoptosis in osteosarcoma

Transcriptional profiling of mRNAs from pooled peripheral blood mononuclear cells of healthy pregnant women pool_hpw.

MicroRNA profiling by array of peripheral blood mononuclear cells from type 1 diabetes mellitus patients

Transcriptional responses of murine macrophages to the adenylate cyclase toxin of Bordetella pertussis

Nanog, SoxB1 and Pou5f1/Oct4 regulate widespread zygotic gene activation during the maternal-to-zygotic transition

Effect of progerin on p53-deficient vascular smooth muscle cells

Expression data from non-pigmented and pigmented mouse melanocytes

Methylome Analysis and Epigenetic Changes Associated with Menarcheal Age

Divergent Compensatory Responses to High Fat Diet Between C57BL6/J and C57BLKs/J Inbred Mouse Strains

Gamma-secretase inhibitor plus fludarabine in CLL

Gene expression analysis of human adipose-derived stem cells.

Recurrent copy number alterations are associated with poor prognosis and HPV infection in penile carcinomas

TFAM ChIP-seq in HeLa cells

Toll-like receptor 7 is a primary sensor of malaria infection

Nasopharyngeal carcinoma patient samples: radio-sensitive samples vs. radio-resistant samples

Low grade gliomas

Transcription profiling by array of human retinas to investigate gene expression in eyes of HIV positive and negative patients

A mechanistic study on the metastasis inducing function of FUS-CHOP fusion protein in liposarcoma

Expression data from Sf3b1 heterozygous Lineage-c-Kit+Sca-1+ (LSK) bone marrow cells

RNA-seq analysis of broiler liver transcriptome reveals novel responses to heat stress

Niche-based screening identifies small-molecule inhibitors of leukemia stem cells

EPIC-Italy at HuGeF

Gene expression profiling of MYC-amplified medulloblastoma cell lines treated by JQ1, a BET bromodomain inhibitor

Electrochemical selection and characterization of a Shewanella oneidensis mutant with enhanced current-generating capability and altered gene expression profiles

Genomic profiling of Anaplastic Large Cell Lymphoma

Genomic profiling of Richter-syndrome Chronic Lymphocytic Leukemia

Gene expression profiles mas5D, ssa2D, hsf1-overexpressing and heat-stressed wild type Schizosaccharomyces pombe cells

Gene expression changes in group 2 sigma factor mutant, ΔsigCDE, in standard growth conditions and after high-light treatment

DNA intermediates of meiotic recombination in synchronous S. pombe at optimal temperature

DNA replication and DSB factor binding in the meiotic S-phase checkpoint in budding yeast

CGH mesurement of DNA replication in wild-type and cdc6-mn replication deficient strains.

Genome-wide analysis of dFOXO binding sites in Drosophila

Synergistic Activation of Inflammatory Cytokine Genes by Priming of Regulatory DNA Elements for Increased Transcription in Response to TLR Signaling

The genome and development-dependent transcriptomes of Pyronema confluens: a window into fungal evolution

Exploring the larval transcriptome of the common sole (Solea solea L.)

Expression data from peripheral blood - blood draws at Pre and Post time points of Allergen inhalation challenge (ER and DR)

Profiling of lncRNAs and protein-coding RNAs in colorectal cancer and of MYC-regulated lncRNAs and protein-coding RNAs

Study functions of ADAR proteins using next generation sequencing of genome and transcriptome

CSF-1R inhibition alters macrophage polarization and blocks gliomagenesis

BET bromodomain inhibition suppresses TH17-mediated pathology

ChIP-seq of Salmonella enterica subsp. enterica serovar Typhimurium str. 14028s for C-terminally FLAG-tagged HilD to identify novel HilD-regulated genes

RNA-seq of M. tuberculosis to investigate genotype-phenotype diversity amongst clinical isolates

A genome-wide analysis of open chromatin in human epididymis epithelial cells reveals novel candidate regulatory elements for male infertility

A genome-wide analysis of open chromatin in human epididymis epithelial cells reveals novel candidate regulatory elements for male infertility [DNase-Seq]

STAT3 promotes motor neuron differentiation by collaborating with motor neuron-specific LIM complex

Intronic Non-CG DNA Hydroxymethylation and Alternative mRNA Splicing in Honey Bees

Transcriptomic analysis of a nickel-resistant Saccharomyces cerevisiae mutant obtained by evolutionary engineering

Transcriptional changes in Zea mays seedlings treated with insect elicitor (volicitin).

Direct comparison of effects of slow-freezing and vitrification procedures on rabbit late blastocyst transcriptome

How does exposure of yellow perch (Perca flavescens) to nickel and cadmium affect the transcriptome-results from a 1000 candidate-gene microarray

Expression Data from transNOAH breast cancer trial

Re-analysis of E-MTAB-1585

Genotype-by-diet interaction effects on transcriptome profiles in Drosophila melanogaster

In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency

In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency.

Temperature-dependent alternative splicing of FLM controls flowering in Arabidopsis thaliana

Differentially expressed miRNAs between Alzheimer's disease and control mice's hippocampus

The AP-1 Transcription Factor c-Jun Prevents Stress-Imposed Maladaptive Remodeling of the Heart

Microarray data of leukemia cells with or without IKK inhibitor treatment

Microarray data of human leukemia cells MV4;11 with or without IKK inhibitor treatment.

Microarray data of mouse MLL-AF10 leukemia cells with or without IKK inhibitor treatment

Campylobacter jejuni transcriptomic response to benzylisothiocyanate

Genome-wide DNA methylation, gene expression, and copy number integrative analysis of melanoma brain metastasis

DNA methylation analysis of melanoma progression to brain metastasis

Affymetrix expression array data for melanoma progression to the brain

Affymetrix SNP array data for metastatic melanoma specimens

Transcriptome data used for gene annotation

Cytokine-dependent dendritic cell differentiation in the splenic microenvironment

NanoString miRNA profiling of THP1-differentiated macrophages treated with LPS derived from A. aggregatibacter, P. gingivalis and Pg LPS treated with cigrate smoke extract (Pg CSE)

Targeting oncogene expression to endothelial cells induces proliferation of the myelo-erythroid lineage by repressing the notch pathway

Synbiotic impact of tagatose on viability of Lactobacillus rhamnosus strain GG mediated by the phosphotransferase system (PTS)

The GtaR quorum-sensing protein negatively regulates a capsular polysaccharide gene transfer agent (RcGTA) receptor on Rhodobacter capsulatus cells

Th2 cytokine IL-4 is critical in initiating pulmonary vascular inflammation under hypoxic conditions and induces pulmonary vascular endothelial cell activation.

Genotypic and Phenotypic Versatility of Aspergillus flavus during Maize Exploitation

Transcription profiling by array of human mesenchymal stromal cells from patients with multiple sclerosis before and after autologous hematopoietic stem cell transplantation.

Quantitative Prediction of Signal Pathway Activity from Genome-wide Expression Data

Timecourse of doxycycline induction in bitransgenic MTB/TAN, MTB/TOM, and MTB/TWNT1 mice or monotransgenic MTB control mice

TGF beta Dosage Experiment

Molecular Hallmarks of Experimentally Acquired Immunity to Malaria

Genes induced by IFN-beta, IFN-gamma or unphosphoraylted STAT1 in human fibroblasts

Expression data from adult Shh-responding astroglia cells in mice

Analysis of gene expression with the Hmga2 allelic series.

microRNA expression profile in human gliomas

Genome-wide signatures of differential DNA methylation and gene expression in pediatric ALL

Genome-wide signatures of differential DNA methylation in pediatric acute lymphoblastic leukemia

High-efficiency RNA cloning enables quantitative measurement of miRNA expression by deep sequencing

Genome-wide differential gene expression signatures in pediatric acute lymphoblastic leukemia subtypes

ChIP-chip of DSB factors in the presence and absence of S phase checkpoint induction

Global analysis of DNA methylation changes during progression of oral tumorigenesis

High-throughput sequencing of matched colorectal normal, tumor and metastasis tissues and proof-of principal bioinformatics modeling of therapeutic consequences of miRNA applications

Region-specific gene expression profiles in left atria of patients with valvular atrial fibrillation

Transcriptome analysis of M.tuberculosis using RNA-seq indicates WhiB6 repression of dormancy associated genes

Role of the ArcAB two-component system in oxidative stress

Expression data from EGR1-transfected H1299 cells vs normal H1299 cells

Gene expression of thymic settling progenitors from embryos at E13 compared to E18

PDL2+, PDL2- and LPS treated PDL2- WT bone-marrow derived murine DCs

Expression data from kidney biopsies of liver disease patients

microRNA and gene expression profile in ischemia reperfusion injury in heart transplantation

microRNA expression in heart tissue

Expression data from heart tissue

Expression data from preadipocytes isolated from laying hen

Gene expression analysis of yehUT two component regulatory system

Unlimited in vitro expansion of adult bi-potent pancreas progenitors through the Lgr5/Rspondin axis

Gene expression profiling on innervated and denervated muscles of Smad4 KO and control mice.

Large-scale hypomethylated blocks associated with Epstein-Barr virus-induced B-cell immortalization

Large-scale hypomethylated blocks associated with Epstein-Barr virus-induced B-cell immortalization [Expression Array]

Large-scale hypomethylated blocks associated with Epstein-Barr virus-induced B-cell immortalization [Bisulfite-seq]

Expression data from Adipose Stem Cells (ASC) from morbidly obese and non-obese individuals

SALT-RESPONSIVE ERF1 expression profiling in rice roots

Comparative analysis of the Trichoderma reesei transcriptome during growth on the cellulase inducing substrates wheat straw and lactose

The effects of dietary selenium on selenocysteine incorporation and selenoprotein expression

Gene expression data from lateral ventricle choroid plexuses of developing and adult rats

Focal Adhesion Kinase Dependent Expression

Comparative intraindividual transcriptome analysis of B-precursor ALL of childhood

Gene expression profile in melanomas from Pdk1-inactivated BrafV600E::Pten-/- mice

Affymetrix SNP array data for acute lymphoblastic leukemia samples

Expression data for HT29 cells treated with 5-aza-deoxy-cytidine

Expression data for HT29 cells treated with 5-aza-deoxy-cytidine [RNA-Seq]

Early molecular assessment of osseointegration in humans

Expression data for HT29 cells treated with 5-aza-deoxy-cytidine [Affymetrix]

Distinct Micro-RNA profiles are associated with severity of hepatitis C virus recurrence and acute cellular rejection after liver transplant

Gene expression of soybean roots inoculated with wild-type and type III secretion mutant strains of Bradyrhizobium elkanii

Gene expression analysis in a variety of normal, premalignant and squamous cell carcinomas of the cervix

RNA-seq of coding RNA from Mycobacterium tuberculosis H37Rv overexpressing HigB compared to the empty vector control strain to investigate the role of the HigB toxin

Nucleosome free DNA- and acetyl histone-binding components recruit SWR1 to yeast promoters for H2A.Z replacement

In search of epigenetic marks in testes and sperm cells of differentially fed boars

In search of epigenetic marks in testes and sperm cells of differentially fed boars [RNA-Seq]

In search of epigenetic marks in testes and sperm cells of differentially fed boars [Agilent]

Expression data from Pseudomonas aeruginosa PAO1 and an isogenic HCN negative mutant (PAO6344), grown under cyanogenic conditions.

DNA methylation profiles across different brain regions in healthy mice

DNA methylation profiles across different brain regions in Alzheimer disease mice models

Potential biomarkers of non-obstructive azoospermia identified in microarray gene expression analysis

Genome-wide distribution of the three condensin complexes in C. elegans

MicroRNA-146 function in the innate immune response of zebrafish embryos to Salmonella typhimurium infection

MicroRNA-146 function in the innate immune response of zebrafish embryos to Salmonella typhimurium infection [miRNA profile]

MicroRNA-146 function in the innate immune response of zebrafish embryos to Salmonella typhimurium infection [RNA-seq]

Gene expression profile of A549 cells from tissue of 4D model predicts poor prognosis in lung cancer patients

Genome-wide analysis and comparison of E15 and adult rat lateral ventricular choroid plexus epithelial cells.

Time series of Methanococcus maripaludis MM901, a shift from a H2-limited condition to a H2-excess condition

Time series of Methanococcus maripaludis MM901:del_mtd (MMP0372), a shift from a H2-excess and P-limiting condition to a H2-limited and P-excess condition in chemostats (growth rate held constant)

Time series of Methanococcus maripaludis MM901:del_fruA (MMP1382)-del_frcA (MMP0820), a shift from a H2-excess and P-limiting condition to a H2-limited and P-excess condition in chemostats (growth rate held constant)

Time series of Methanococcus maripaludis MM901:del_MMP1447, a shift from a H2-excess and P-limiting condition to a H2-limited and P-excess condition in chemostats (growth rate held constant)

Time series of Methanococcus maripaludis MM901:del_MMP1100, a shift from a H2-excess and P-limiting condition to a H2-limited and P-excess condition in chemostats (growth rate held constant)

Time series of Methanococcus maripaludis MM901:del_MMP0719, a shift from a H2-excess and P-limiting condition to a H2-limited and P-excess condition in chemostats (growth rate held constant)

Time series of Methanococcus maripaludis MM901, a shift from a H2-excess condition to a H2-limiting condition

Time series of Methanococcus maripaludis MM901, a shift from a H2-excess and P-limiting condition to a H2-limited and P-excess condition in chemostats (growth rate held constant)

Time series of Methanococcus maripaludis MM901, a shift from a H2-excess and N-limiting condition to a H2-limited and N-excess condition in chemostats (growth rate held constant)

Steady-state samples of Methanococcus maripaludis MM901 grown on N14 or N15

Steady-state samples of Methanococcus maripaludis MM901:del_mtd (MMP0372)

Steady-state samples of Methanococcus maripaludis MM901:del_fruA (MMP1382)-del_frcA (MMP0820)

Steady-state samples of Methanococcus maripaludis MM901:del_frcA (MMP0820)

Steady-state samples of Methanococcus maripaludis MM901 grown on formate-excess medium

HPV-related methylation in Oropharyngeal squamous cell carcinomas (OPSCC)

Transcriptional profiling of intestinal samples from Atg4b knock-out mice during chemical-induced colitis

Gene expression profiling of A549 cells that undergo cell death

Mapping the inter- and intra-chromosomal interactions of specific insulator binding sites with circular chromosome conformation capture (4C) assay (Gondor et al., 2008 Nature Protocol)

Mapping the inter- and intra-chromosomal interactions of specific insulator binding sites with circular chromosome conformation capture (4C) assay (Gondor et al., 2008 Nature Protocol) [NimbleGen Array data]

Gene expression profiling in leiomyosarcomas and undifferentiated pleomorphic sarcomas: SRC as a new diagnostic marker

The effect of miR-294 and miR-181 on the transcriptome during OSK reprogramming of MEFs

Gene expression data from lymphoblastoid cell lines from participants in the Genetics of Microangiopathic Brain Injury study