E-TOXM-16 - Transcription profiling of rat liver response to genotoxic carcinogens at doses known to induce liver tumors in the 2-year rat bioassay - short term in vivo study

Status
Released on 15 May 2005, last updated on 2 May 2014
Organism
Rattus norvegicus
Samples (126)
Array (1)
Protocols (9)
Description
When applied in toxicological studies, the recently developed gene expression profiling techniques using microarrays, which brought forth the new field of toxicogenomics, facilitate the interpretation of a toxic compound?s mechanism of action. In this study, we investigated whether genotoxic carcinogens at doses known to induce liver tumors in the 2-year rat bioassay deregulate a common set of genes in a short-term in vivo study and, if so, whether these deregulated genes represent defined biological pathways. Rats were dosed with the four genotoxic hepatocarcinogens Dimethylnitrosamine [CAS:62-75-9;CHEBI:21778] (4 mg/kg/day), 2-nitrofluorene [CAS:607-57-8;CHEBI:1224] (44 mg/kg/day), Aflatoxin B1 [CAS:1162-65-8;CHEBI:2504] (0.24 mg/kg/day), and 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone [CAS:64091-91-4;CHEBI:32692] (NNK, 20 mg/kg/day). After treatment for up to 14 days, the expression profiles of the livers were analyzed on Affymetrix RG_U34A microarrays. Among the significantly upregulated genes were a set of target genes of the tumor suppressor protein p53, indicating a DNA damage response. Such a response was expected and, therefore, confirmed the validity of our approach. In addition, the gene expression changes suggest a specific detoxification response, the activation of proliferative and survival signaling pathways, and some cell structural changes. These responses were strong throughout the 14 day time course for 2-nitrofluorene and aflatoxin B1; in the case of dimethylnitrosamine and NNK, the effects were weakly detectable at day 1 and then increased with time. For dimethylnitrosamine and aflatoxin B1, which caused observable inflammation in vivo, we found a corresponding upregulation of inflammatory genes at the same time points. Thus, by the toxicogenomic analysis of short-term in vivo studies, we identified genes and pathways commonly deregulated by genotoxic carcinogens, which may be indicative for the early events in tumorigenesis and, thus, predictive of later tumor development.
Experiment types
transcription profiling by array, compound treatment, dose response
Contacts
Citation
Comparison of the expression profiles induced by genotoxic and nongenotoxic carcinogens in rat liver. Ellinger-Ziegelbauer H, Stuart B, Wahle B, Bomann W, Ahr HJ.
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-TOXM-16.idf.txt
Sample and data relationshipE-TOXM-16.sdrf.txt
Array designA-AFFY-18.adf.txt
Links