E-TABM-6 - Transcription profiling of developmental time series for 10 different mutants with a combination of single and double mutants in 6 genes

Status
Released on 8 April 2005, last updated on 2 May 2014
Organism
Dictyostelium discoideum
Samples (11)
Array (1)
Protocols (9)
Description
We analyzed a developmental time course of ten different mutants with a combination of single and double mutants in 6 genes. The samples were collected at the following time points following starvation: 0, 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22 and 24 hours. Dissimilarities between mutant time courses were measured by calculating both Euclidean distances and Pearson's correlation based distances between the scaled mutant time courses.
Experiment types
transcription profiling by array, development or differentiation, reference, time series
Contacts
Nancy E Van Driessche <nv993804@bcm.tmc.edu>, Adam Kuspa, Blaz Zupan, Ezgi Booth, Gad Shaulsky, Janez Demsar, Paul Hill, Peter Juvan
Citation
Epistasis analysis with global transcriptional phenotypes. Nancy Van Driessche; Janez Demsar; Ezgi Booth; Paul Hill; Peter Juvan; Blaz Zupan; Adam Kuspa; Gad Shaulsky.
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-TABM-6.idf.txt
Sample and data relationshipE-TABM-6.sdrf.txt
Raw data (2)E-TABM-6.raw.1.zip, E-TABM-6.raw.2.zip
Array designA-MEXP-161.adf.txt
R ExpressionSetE-TABM-6.eSet.r
Links