E-TABM-479 - Comparative genomic hybridization of samples from 30 humans and 30 chimpanzees to survey copy number variation in these species

Status
Submitted on 21 May 2008, released on 28 August 2008, last updated on 2 May 2014
Organism
Homo sapiens, Pan troglodytes
Samples (62)
Array (1)
Protocols (6)
Description
Sixty-one array-CGH experiments were performed on the human WGTP platform, comparing: (1) 30 unrelated chimpanzees to a single chimpanzee reference individual, (2) 30 unrelated humans to a single human reference individual and (3) the chimpanzee reference individual to the human reference individual.
Experiment types
comparative genomic hybridization by array, comparative genome hybridization, species, strain or line
Contact
Citation
Copy number variation and evolution in humans and chimpanzees. Perry, George H.; Yang, Fengtang; Marques-Bonet, Tomas; Murphy, Carly; Fitzgerald, Tomas; Lee, Arthur S.; Hyland, Courtney; Stone, Anne C.; Hurles, Matthew E.; Tyler-Smith, Chris; Eichler, Evan E.; Carter, Nigel P.; Lee, Charles; Redon, Richard. Genome Res 18(11):1698 (2008), Europe PMC 18775914
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-TABM-479.idf.txt
Sample and data relationshipE-TABM-479.sdrf.txt
Raw data (2)E-TABM-479.raw.1.zip, E-TABM-479.raw.2.zip
Processed data (2)E-TABM-479.processed.1.zip, E-TABM-479.processed.2.zip
Array designA-MEXP-1162.adf.txt
R ExpressionSetE-TABM-479.eSet.r
Links