E-TABM-314 - Chromatin immunoprecipitation of human cell line HepG2 with anti-Histone H3 acetyl K9/14, USF1 antibody, USF2 antibody and normal rabbit IgG

Status
Released on 30 November 2007, last updated on 2 May 2014
Organism
Homo sapiens
Samples (6)
Arrays (7)
Protocols (5)
Description
Whole genome ChIP-chip study using human liver cell line HepG2 and anti-Histone H3 acetyl K9/14 (06-599); USF1 antibody (H-86, sc-8983); USF2 antibody (C-20, sc-862) and normal rabbit IgG (12-370). Three completely independent biological replicates were performed for each antibody, obtaining the corresponding input as total genomic DNA reference. Hybridizations were performed using Affymetrix GeneChip Human Tiling 2.0R Array set (7 arrays set).
Experiment types
ChIP-chip by array, binding site identification
Contacts
Citation
Identification of candidate regulatory SNPs by combination of transcription-factor-binding site prediction, SNP genotyping and haploChIP. Ameur, Adam; Rada-Iglesias, Alvaro; Komorowski, Jan; Wadelius, Claes. Nucleic Acids Res 37(12):e85 (2009), Europe PMC 18230803
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