E-TABM-258 - Transcription profiling of wild type and mutant Arabidopsis plants infected with Pythium irregulare

Status
Submitted on 11 April 2007, released on 3 August 2007, last updated on 2 May 2014
Organism
Arabidopsis thaliana
Samples (28)
Arrays (3)
Protocols (7)
Description
To characterize the plant molecular response to Pythium irregulare, whole genome transcriptional profiles of infected and non-infected, wild type, jasmonic acid insensitive (coi1-1), ABA biosynthesis mutants (aba2-12), ein2-5 mutant, sid2-1 plants were obtained using “two-color” long-oligonucleotide microarrays.
Experiment types
transcription profiling by array, co-expression, genetic modification, growth condition, replicate
Contact
Citation
ABA Is an Essential Signal for Plant Resistance to Pathogens Affecting JA Biosynthesis and the Activation of Defenses in Arabidopsis. Adie BA, Pérez-Pérez J, Pérez-Pérez MM, Godoy M, Sánchez-Serrano JJ, Schmelz EA, Solano R. Plant Cell 19(5):1665-1681 (2007), Europe PMC 17513501
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-TABM-258.idf.txt
Sample and data relationshipE-TABM-258.sdrf.txt
Raw data (1)E-TABM-258.raw.1.zip
Processed data (1)E-TABM-258.processed.1.zip
Array designsA-ATMX-5.adf.txt, A-ATMX-6.adf.txt, A-ATMX-7.adf.txt
R ExpressionSetE-TABM-258.eSet.r
Links