E-TABM-220 - Transcription profiling of logarithmically growing fission yeast

Status
Submitted on 5 February 2007, released on 22 March 2007, last updated on 2 May 2014
Organism
Schizosaccharomyces pombe
Samples (2)
Array (1)
Protocols (7)
Description
To estimate mRNA steady-state levels we used RNA extracted from logarithmically growing fisson yeast cells on Affymetrix Yeast 2.0 Genechip arrays. The signal intensities from two independent biological repeats were averaged, resulting in measurements for 4818 out of 4962 nuclear protein-coding genes.
Experiment types
transcription profiling by array, co-expression, replicate
Contact
Citation
A Network of Multiple Regulatory Layers Shapes Gene Expression in Fission Yeast. Daniel H. Lackner, Traude H. Beilharz, Samuel Marguerat, Juan Mata, Stephen Watt, Falk Schubert, Thomas Preiss and J�rg B�hler. Mol Cell in review
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-TABM-220.idf.txt
Sample and data relationshipE-TABM-220.sdrf.txt
Raw data (1)E-TABM-220.raw.1.zip
Processed data (1)E-TABM-220.processed.1.zip
Array designA-AFFY-47.adf.txt
R ExpressionSetE-TABM-220.eSet.r
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