E-TABM-138 - Chromatin immunoprecipitation of human and chimp cell lines GM06990, HFL1, HeLaS3, MOLT4 and PTR8 with anti Histone H3K4me1, H3K4me2, H3K4me3, H3ac and H4ac antibodies using an ENCODE array

Status
Submitted on 15 May 2006, released on 30 August 2006, last updated on 2 May 2014
Organism
Homo sapiens, Pan troglodytes
Samples (4)
Array (1)
Protocols (14)
Description
ENCODE ChIP/chip study using human lymphoblastoid cell line GM06990; human cervix carcinoma cell line HeLaS3; human fetal lung fibroblast cell line HFL1; human T cell line MOLT4; chimpanzee lymphoblastoid cell line PTR8; and anti Histone H3K4me1 (Abcam; ab8895); H3K4me2 (Abcam; ab7766); H3K4me3 (Abcam; ab8580); H3ac (Upstate; 06-599) and H4ac (Upstate; 06-866) antibodies. The experiment was conducted in three biological replicates (1;2;3) with up to two technical duplicates (a;b).
Experiment types
ChIP-chip by array, binding site identification
Contacts
Citation
The Landscape of Activating Histone Modifications across 1% of the Human Genome. Christoph M. Koch; Robert M. Andrews; Paul Flicek; Shane C. Dillon; Ula? Karaöz; Gayle K. Clelland; Sarah Wilcox; David M. Beare; Joanna C. Fowler; Phillippe Couttet; Keith D. James; Gregory C. Lefebvre; Alexander W. Bruce; Oliver M. Dovey; Peter D. Ellis; Pawandeep Dhami; Cordelia F. Langford; Zhiping Weng; Ewan Birney1; Nigel P. Carter; David Vetrie; Ian Dunham. Genome Res 
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-TABM-138.idf.txt
Sample and data relationshipE-TABM-138.sdrf.txt
Raw data (2)E-TABM-138.raw.1.zip, E-TABM-138.raw.2.zip
Processed data (1)E-TABM-138.processed.1.zip
Array designA-MEXP-215.adf.txt
R ExpressionSetE-TABM-138.eSet.r
Links