E-TABM-135 - Transcription profiling of 100 Arabidopsis Col/Ler recombinant inbred lines to generate a high-density genetic linkage map

Status
Submitted on 18 August 2006, released on 1 September 2006, last updated on 10 June 2011
Organism
Arabidopsis thaliana
Samples (162)
Array (1)
Protocols (5)
Description
The aim of this study was to generate a high-density genetic linkage map of Arabidopsis. A custom-designed exon-specific whole-genome array was used to identify ~16,000 significant SFP markers between the parental accessions Col and Ler. Subsequently 100 Col/Ler recombinant inbred lines (RILs) were hybridized to the whole genome exon arrays and the SFP-markers genotyped in all lines.
Experiment types
transcription profiling by array, genotyping, strain or line
Contact
Citation
A High-Resolution Map of Arabidopsis Recombinant Inbred Lines by Whole-Genome Exon Array Hybridization. Tatjana Singer, Yiping Fan, Hur-Song Chang, Tong Zhu, Samuel P. Hazen, Steven P. Briggs. PLoS Genet  (2006)
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-TABM-135.idf.txt
Sample and data relationshipE-TABM-135.sdrf.txt
Raw data (1)E-TABM-135.raw.1.zip
Array designA-AFFY-73.adf.txt
R ExpressionSetE-TABM-135.eSet.r
Links