E-TABM-134 - Genotyping of human lung cancer cells on the 10K Affymetrix SNP array to validate whole genome amplification of genomic DNA from laser captured microdissectates and genotyping serial samples of developing lung cancers to identify early events

Status
Released on 1 October 2006, last updated on 2 May 2014
Organism
Homo sapiens
Samples (25)
Arrays (2)
Protocols (8)
Description
A series of experiments were performed to validate whole genome amplification of genomic DNA from laser captured microdissectates and the technique was then applied to serial samples of developing lung cancers to identify early events. 10K Affymetrix SNP arrays were used.
Experiment types
genotyping by array, disease state, genotyping, optimization
Contact
Citation
Validation of a method for processing laser captures microdissected samples for analysis using high density single nucleotide polymorphism arrays. Bird H, Snead DRJ, Hey Y, Brown PE, Davis SA, James S, Knowles MA, Hurst CD, Blanks A, Pepper SD.
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-TABM-134.idf.txt
Sample and data relationshipE-TABM-134.sdrf.txt
Raw data (1)E-TABM-134.raw.1.zip
Processed data (1)E-TABM-134.processed.1.zip
Array designsA-AFFY-64.adf.txt, A-AFFY-65.adf.txt
R ExpressionSetE-TABM-134.eSet.r
Links