E-TABM-101 - Transcription profiling of Bordetella pertussis from mid-log phase cultures diluted to two concentrations and sampled at multiple points along the growth curve to determine growth phase-associated patterns of transcript abundance

Status
Released on 31 December 2006, last updated on 2 May 2014
Organism
Bordetella bronchiseptica, Bordetella parapertussis, Bordetella pertussis
Samples (3)
Array (1)
Protocols (7)
Description
B. pertussis mid-log phase cultures were diluted in modified Stainer-Scholte medium to a starting optical density at 600 nm of 0.03 to 0.05, then grown at 37 C with shaking until stationary phase. Samples were taken at multiple points along the growth curve.
Experiment types
transcription profiling by array, strain or line, time series
Contacts
Citation
Growth Phase- and Nutrient Limitation-Associated Transcript Abundance Regulation in Bordetella pertussis. Nakamura, Mari M.; Liew, Sin-Yee; Cummings, Craig A.; Brinig, Mary M.; Dieterich, Christine; Relman, David A. Infect Immun 74(10):5537 (2006), Europe PMC 16988229
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-TABM-101.idf.txt
Sample and data relationshipE-TABM-101.sdrf.txt
Raw data (1)E-TABM-101.raw.1.zip
Array designA-MEXP-493.adf.txt
R ExpressionSetE-TABM-101.eSet.r
Links