E-TABM-10 - Comparative genomic hybridization of 100 favourable histology Wilms tumour samples taken at immediate nephrectomy in order to identify changes in DNA copy number associated with clinical outcome

Status
Released on 11 May 2006, last updated on 2 May 2014
Organism
Homo sapiens
Samples (105)
Array (1)
Protocols (9)
Description
We have carried out microarray-based comparative genomic hybridisation (arrayCGH) on 100 favourable histology Wilms tumour samples taken at immediate nephrectomy in order to identify changes in DNA copy number associated with clinical outcome. Tumour DNA was co-hybridised with normal female genomic DNA onto microarrays consisting of 4263 BAC clones with an approximate 1Mb spacing throughout the genome. Data was normalised and quality-filtered, an adapted weights smoothing algorithm fitted, and changes in DNA copy number assessed for each clone.
Experiment types
comparative genomic hybridization by array, disease state, dye swap, reference
Contact
Citation
Amplification and overexpression of CACNA1E correlates with relapse in favorable histology Wilms' tumors. Natrajan R, Little SE, Reis-Filho JS, Hing L, Messahel B, Grundy PE, Dome JS, Schneider T, Vujanic GM, Pritchard-Jones K, Jones C. Clin Cancer Res 12(24):7284-93 (2006)
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-TABM-10.idf.txt
Sample and data relationshipE-TABM-10.sdrf.txt
Raw data (2)E-TABM-10.raw.1.zip, E-TABM-10.raw.2.zip
Processed data (1)E-TABM-10.processed.1.zip
Array designA-MEXP-192.adf.txt
Links