E-SMDB-2652 - Transcription profiling analysis of microarray coverage of Univeral Human Reference RNA (UHRR) on 43,000-spot human microarrays with yeast controls

Status
Released on 1 November 2005, last updated on 4 June 2014
Organism
Homo sapiens
Samples (0)
Arrays (4)
Protocols (1)
Description
Microarray coverage of UHRR was determined by counting the number of spots with intensities exceeding the 1% and 5% false positive rates defined using the yeast negative control spots. Seven microarrays from different print runs were used. In four experiments, the UHRR was labeled with Cy5 and in three experiments with Cy3. Labeled UHRR was co-hybridized with Common Reference RNA (CRF) developed at Stanford University (8) labeled with the alternate dye.
Experiment types
transcription profiling by array, reference
Contacts
Citation
Universal Reference RNA as a standard for microarray experiments. Novoradovskaya N, Whitfield ML, Basehore LS, Novoradovsky A, Pesich R, Usary J, Karaca M, Wong WK, Aprelikova O, Fero M, Perou CM, Botstein D, Braman J. BMC Genomics 5(1):20 (2004), Europe PMC 15113400
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