E-SMDB-2225 - Transcription profiling of human fibroblast isolated from either back or forearm punch biopsies from normal control patients, patients with a diagnosis of Systemic Sclerosis with Diffuse Scleroderma and patients with a diagnosis of morphea

Status
Released on 19 October 2005, last updated on 27 March 2012
Organism
Homo sapiens
Samples (0)
Arrays (3)
Description
Fibroblast were isolated from either back or forearm punch biopsies taken by Dr. Kari Connolly(UCSF) from either normal control patients, patients with a diagnosis of Systemic Sclerosis with Diffuse Scleroderma and patients with a diagnosis of morphea. Scleroderma fibroblast were grown to confluence, media was changed and the RNA prepared from the cells 48 hrs later (to avoid serum responsive genes).
Experiment types
transcription profiling by array, disease state
Contacts
Citation
Systemic and cell-type specific gene expression patterns in scleroderma skin. Michael Whitfield; Deborah Finlay; John Murray; Olga Troyanskaya; Jen-Tsan Chi; Alexander Pergamenchikov; Timothy McCalmont; Patrick Brown; David Botstein; M. Kari Connolly.
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-SMDB-2225.idf.txt
Sample and data relationshipE-SMDB-2225.sdrf.txt
Raw data (1)E-SMDB-2225.raw.1.zip
Processed data (1)E-SMDB-2225.processed.1.zip
Array designsA-SMDB-387.adf.txt, A-SMDB-391.adf.txt, A-SMDB-466.adf.txt
Links