E-SMDB-1587 - Comparative genomic hybridization of single colony purified H. pylori adhesin phenotyped isolates obtained from 25 cases and 71 controls in a Swedish case-control study of gastric cancer

Status
Submitted on 30 June 2005, released on 30 June 2005, last updated on 27 March 2012
Organism
Helicobacter pylori
Samples (0)
Array (1)
Description
Helicobacter pylori enhances the risk for ulcer disease and gastric cancer, yet only a minority of H. pylori-colonized individuals develop disease. We examined the ability of two H. pylori isolates to induce differential host responses in vivo or in vitro, and then used an H. pylori whole genome microarray to identify bacterial determinants related to pathogenesis. Gastric ulcer strain B128 induced more severe gastritis, proliferation, and apoptosis in gerbil mucosa than did duodenal ulcer strain G1.1, and gastric ulceration and atrophy occurred only in B128+ gerbils. In vitro, gerbil-passaged B128 derivatives significantly increased IL-8 secretion and apoptosis compared with G1.1 strains. DNA hybridization to the microarray identified several strain-specific differences in gene composition including a large deletion of the cag pathogenicity island in strain G1.1. Partial and complete disruption of the cag island in strain B128 attenuated induction of IL-8 in vitro and significantly decreased gastric inflammation in vivo. These results indicate that the ability of H. pylori to regulate epithelial cell responses related to inflammation depends on the presence of an intact cag pathogenicity island. Use of an H pylori whole genome microarray is an effective method to identify differences in gene content between H. pylori strains that induce distinct pathological outcomes in a rodent model of H. pylori infection.
Experiment types
comparative genomic hybridization by array, unknown experiment type
Contacts
Citation
Helicobacter pylori strain-specific differences in genetic content, identified by microarray, influence host inflammatory responses. Israel DA, Salama N, Arnold CN, Moss SF, Ando T, Wirth HP, Tham KT, Camorlinga M, Blaser MJ, Falkow S, Peek RM Jr. J Clin Invest 107:611-20 (2001-03-10), Europe PMC 11238562
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-SMDB-1587.idf.txt
Sample and data relationshipE-SMDB-1587.sdrf.txt
Raw data (1)E-SMDB-1587.raw.1.zip
Processed data (1)E-SMDB-1587.processed.1.zip
Array designA-SMDB-46.adf.txt
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