E-MTAB-931 - Transcription profiling by array of Schizosaccharomyces pombe to compared wild type vs Upf1-delta cells under normal growth conditions

Status
Released on 17 July 2013, last updated on 5 June 2014
Organism
Schizosaccharomyces pombe
Samples (4)
Arrays (2)
Protocols (6)
Description
The Upf1 RNA-binding protein is essential for nonsense-mediated decay (NMD). We compared wild type (ura4-D18 leu1-32 h-) and upfdelta (upf1delta::kanMX6 ura4-D18 leu1-32 h-) cells transcriptome under normal growth conditions
Experiment types
transcription profiling by array, cell type comparison, dye swap
Contact
Citation
Functional characterization of Upf1 targets in Schizosaccharomyces pombe. Matia-Gonzalez AM, Hasan A, Moe GH, Mata J, Rodriguez-Gabriel MA. RNA Biol 10(6):1057-1065 (2013), Europe PMC 23619768
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-MTAB-931.idf.txt
Sample and data relationshipE-MTAB-931.sdrf.txt
Raw data (1)E-MTAB-931.raw.1.zip
Array designsA-MEXP-1247.adf.txt, A-MEXP-1248.adf.txt
Links