E-MTAB-764 - Time series of murine lungs after flu infection

Status
Released on 30 June 2012, last updated on 2 May 2014
Organism
Mus musculus
Samples (54)
Array (1)
Protocols (6)
Description
Time course data from influenza A-infected mice were collected for up to 60 days after infection to monitor gene expression profiles of the host. Whole lungs of individual mice were harvested from three independent infection experiments and at least three biological replicates were taken for a single time point. Mock-infected mice served as controls. Early after infection, the activation of RIG-I and interferon pathways as well as the up-regulation of chemokine and cytokine expression revealed the innate immune response phase which was closely correlated with the presence of infectious virus. Subsequently, viral clearance was initiated by the onset of T cell infiltration. In the late phase of infection, the formation of tertiary lymphoid tissues, bronchus-associated lymphoid tissue (BALT), was observed. The formation of BALT resulted in permanent steady-state changes of the lung transcriptome.
Experiment types
transcription profiling by array, disease state, in vivo, time series
Contacts
Citation
Systematic analysis of the dynamics in gene expression changes describes the multi-level host responses during the course of an influenza A infection. Claudia Pommerenke, Esther Wilk, Barkha Srivastava, Annika Schulze, Natalia Novoselova, Rudi Alberts, Robert Geffers and Klaus Schughart.
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-MTAB-764.idf.txt
Sample and data relationshipE-MTAB-764.sdrf.txt
Raw data (2)E-MTAB-764.raw.1.zip, E-MTAB-764.raw.2.zip
Processed data (1)E-MTAB-764.processed.1.zip
Array designA-MEXP-724.adf.txt
Links