E-MTAB-62 - Human gene expression atlas of 5372 samples representing 369 different cell and tissue types, disease states and cell lines

Status
Released on 4 August 2010, last updated on 2 May 2014
Organism
Homo sapiens, Mus musculus
Samples (5372)
Array (1)
Protocols (1)
Description
The experiment contains systematically annotated and consistently normalized human gene expression data matrix of 5372 samples integrated from 206 public experiments of a HG-U133A array platform. The dataset is a subset of a larger pool of 9004 samples gathered from ArrayExpress and GEO websites and checked for quality assessment and suitability for data co-analysis as described by Bolstad et al 2005. The sample annotations have been subject to semiautomatic curation and manual generalization of 369 biological groups which have been additionally organized into blood/non-blood, 14 and 15 meta-classes.
Experiment types
transcription profiling by array, co-expression, data integration
Contact
Citations
Multiple receptor tyrosine kinases promote the in vitro phenotype of metastatic human osteosarcoma cell lines. Rettew AN, Young ED, Lev DC, Kleinerman ES, Abdul-Karim FW, Getty PJ, Greenfield EM. Oncogenesis 1:e34 (2012), Europe PMC 23552467
Coevolution reveals a network of human proteins originating with multicellularity. Bezginov A, Clark GW, Charlebois RL, Dar VU, Tillier ER. Mol Biol Evol 30(2):332-346 (2013), Europe PMC 22977115
A global map of human gene expression. Lukk M, Kapushesky M, Nikkilä J, Parkinson H, Goncalves A, Huber W, Ukkonen E, Brazma A. Nat Biotechnol. 28(4):322-4, Europe PMC 20379172
A fully scalable online pre-processing algorithm for short oligonucleotide microarray atlases. Lahti L, Torrente A, Elo LL, Brazma A, Rung J. Nucleic Acids Res 41(10):e110 (2013), Europe PMC 23563154
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-MTAB-62.idf.txt
Sample and data relationshipE-MTAB-62.sdrf.txt
Raw data (121)Click to browse raw data
Processed data (1)E-MTAB-62.processed.2.zip
Array designA-AFFY-33.adf.txt
Links