E-MTAB-40 - Tiling path analysis to determine copy-number variation in 40 Utah/Morman and Yoruban population samples using NimbleGen technology

Status
Released on 1 April 2009, last updated on 4 June 2014
Organism
Homo sapiens
Samples (42)
Arrays (60)
Protocols (4)
Description
A copy-number variation (CNV) analysis was run on 40 CEU and YRI samples across an array set tiling across the human genome. The array contained 42 million oligos spread across 20 arrays. The final design provided 1 probe per 50bp average density across the genome.

PLEASE ACCESS FILES DIRECTLY FROM THE FTP SERVER - ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-40
Experiment types
 comparative genome hybridization, individual genetic characteristics, reference, transcription profiling by tiling array
Contact
Citation
Origins and functional impact of copy number variation in the human genome. Donald F. Conrad, Dalila Pinto, Richard Redon, Lars Feuk, Omer Gokcumen, Yujun Zhang, Jan Aerts, T. Daniel Andrews, Chris Barnes, Peter Campbell, Tomas Fitzgerald, Min Hu, Chun Hwa Ihm, Kati Kristiansson, Daniel G. MacArthur, Jeffrey R. MacDonald, Ifejinelo Onyiah, Andy Wing Chun Pang, Sam Robson, Kathy Stirrups, Armand Valsesia, Klaudia Walter, John Wei, Wellcome Trust Case Control Consortium, Chris Tyler-Smith, Nigel P. Carter, Charles Lee, StephenW. Scherer & Matthew E. Hurles.
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-MTAB-40.idf.txt
Sample and data relationshipE-MTAB-40.sdrf.txt
Raw data (616)Click to browse raw data
Processed data (362)Click to browse processed data
Array designsA-MEXP-1186.adf.txt, A-MEXP-1187.adf.txt, A-MEXP-1188.adf.txt, A-MEXP-1189.adf.txt, A-MEXP-1190.adf.txt, A-MEXP-1191.adf.txt, A-MEXP-1192.adf.txt, A-MEXP-1193.adf.txt, A-MEXP-1194.adf.txt, A-MEXP-1195.adf.txt, A-MEXP-1196.adf.txt, A-MEXP-1197.adf.txt, A-MEXP-1198.adf.txt, A-MEXP-1199.adf.txt, A-MEXP-1200.adf.txt, A-MEXP-1201.adf.txt, A-MEXP-1202.adf.txt, A-MEXP-1203.adf.txt, A-MEXP-1204.adf.txt, A-MEXP-1205.adf.txt, A-MEXP-1206.adf.txt, A-MEXP-1207.adf.txt, A-MEXP-1208.adf.txt, A-MEXP-1209.adf.txt, A-MEXP-1210.adf.txt, A-MEXP-1211.adf.txt, A-MEXP-1212.adf.txt, A-MEXP-1213.adf.txt, A-MEXP-1214.adf.txt, A-MEXP-1215.adf.txt, A-MEXP-1216.adf.txt, A-MEXP-1217.adf.txt, A-MEXP-1218.adf.txt, A-MEXP-1219.adf.txt, A-MEXP-1220.adf.txt, A-MEXP-1221.adf.txt, A-MEXP-1222.adf.txt, A-MEXP-1223.adf.txt, A-MEXP-1224.adf.txt, A-MEXP-1225.adf.txt, A-MEXP-1226.adf.txt, A-MEXP-1227.adf.txt, A-MEXP-1228.adf.txt, A-MEXP-1229.adf.txt, A-MEXP-1230.adf.txt, A-MEXP-1231.adf.txt, A-MEXP-1232.adf.txt, A-MEXP-1233.adf.txt, A-MEXP-1234.adf.txt, A-MEXP-1235.adf.txt, A-MEXP-1236.adf.txt, A-MEXP-1237.adf.txt, A-MEXP-1238.adf.txt, A-MEXP-1239.adf.txt, A-MEXP-1240.adf.txt, A-MEXP-1241.adf.txt, A-MEXP-1242.adf.txt, A-MEXP-1243.adf.txt, A-MEXP-1244.adf.txt, A-MEXP-1245.adf.txt
Links