E-MTAB-369 - Transcription profiling by array of Xenopus laevis embryos at 15 different stages

Status
Released on 1 August 2011, last updated on 3 May 2014
Organism
Xenopus laevis
Samples (30)
Array (1)
Protocols (3)
Description
The experiment were perfomed as a part of our Vertebrate Evo-Devo project. The aim of the project is to compare transcription profiles of normal (unmanipulated, wild-type, whole embryo) vertebrate embryos. Total RNA was collected from wild type X.laevis whole embryos at 15 different stages (Stages:2, 5, 9, 11, 13, 17, 19, 21, 23, 26, 28, 31, 37/38, 43, 48), and hybridized to A-AFFY-163 Affymetrix Xenopus laevis Genome 2.0 Array. All the stages contains data from 2 biological replications. Each staged-samples consists of pooled total RNA from several whole embryos.
Experiment types
transcription profiling by array, co-expression, development or differentiation, in vivo
Contact
Citations
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-MTAB-369.idf.txt
Sample and data relationshipE-MTAB-369.sdrf.txt
Raw data (1)E-MTAB-369.raw.1.zip
Processed data (1)E-MTAB-369.processed.1.zip
Array designA-AFFY-163.adf.txt
R ExpressionSetE-MTAB-369.eSet.r
Links