E-MTAB-2699 - Long-term adaptation to hypoxic conditions - Febit transcriptome analysis

Status
Last updated on 27 June 2014, released on 1 July 2014
Organism
Aspergillus fumigatus
Samples (6)
Array (1)
Protocols (7)
Description
Aspergillus fumigatus is an opportunistic, airborne pathogen causing invasive aspergillosis in immunocompromised patients. During the infection process A. fumigatus is challenged by hypoxic microenvironments occurring in inflammatory, necrotic tissue. To gain further insights into the adaptation mechanism, A. fumigatus was cultivated in an oxygen-controlled chemostat under hypoxic and normoxic conditions. Transcriptome analysis revealed significant increases in transcripts associated with cell wall polysaccharide metabolism, amino acid and metal ion transport, nitrogen metabolism and glycolysis. A concomitant reduction in transcript levels was observed with cellular trafficking and G-protein coupled signaling. To learn more about the functional roles of hypoxia-induced transcripts we deleted A. fumigatus genes putatively involved in reactive nitrogen species detoxification (fhpA), NAD+ regeneration (frdA, osmA) nitrogen metabolism (niaD, niiA) and respiration (rcfB). We show that the NO-detoxifying flavohemoprotein fhpA is strongly induced by hypoxia independent of the nitrogen source, but is dispensable for hypoxic survival. By deleting the nitrate reductase gene niaD, the nitrite reductase gene niiA and the two fumarate reductases genes frdA and osmA, we found that alternative electron acceptors such as nitrate and fumarate do not have a significant impact on growth of A. fumigatus during hypoxia, but that functional mitochondrial respiratory chain complexes are essential under these conditions. Inhibition studies indicated that primarily complex III and IV play a crucial role in the hypoxic growth of A. fumigatus.
Experiment types
transcription profiling by array, co-expression, growth condition design, reference design
Contacts
Citation
Identification of hypoxia-inducible targets of Aspergillus fumigatus by transcriptome analysis reveals respiratory genes as important contributors to hypoxic survival. Kristin Kroll, Vera PŠhtz, Falk Hillmann, Yakir Vaknin, Wolfgang Schmidt-Heck, Martin Roth, Ilse D. Jacobsen, Nir Osherov and Olaf Kniemeyer.
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-MTAB-2699.idf.txt
Sample and data relationshipE-MTAB-2699.sdrf.txt
Raw data (1)E-MTAB-2699.raw.1.zip
Processed data (1)E-MTAB-2699.processed.1.zip
Array designA-GEOD-13789.adf.txt
Links