E-MTAB-2388 - DNA:RNA immunoprecipitation and tiling microarray (DRIP-chip) to obtain the genome-wide distribution of DNA:RNA hybrid prone loci in Saccharomyces cerevisiae

Status
Released on 6 May 2014, last updated on 3 June 2014
Organism
Saccharomyces cerevisiae
Samples (10)
Array (1)
Protocols (7)
Description
Experiment to obtain the genome-wide distribution of DNA:RNA hybrid prone loci in Saccharomyces cerevisiae by DNA:RNA immunoprecipitation and tiling microarray (DRIP-chip). Samples: wild type, Rnase H deletion mutant, hpr1 deletion mutant, sen1-1 temperature sensitive mutant.
Experiment types
ChIP-chip by array, binding site identification design, in vivo
Contact
Citation
Genome-Wide Profiling of Yeast DNA:RNA Hybrid Prone Sites with DRIP-Chip. Yujia A Chan, Maria J Aristizabal, Phoebe YT Lu, Zongli Luo, Akil Hamza, Michael S Kobor, Peter C Stirling, Philip Hieter. PLoS Genet. :e1004288 (2014), Europe PMC 24743342
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-MTAB-2388.idf.txt
Sample and data relationshipE-MTAB-2388.sdrf.txt
Raw data (2)E-MTAB-2388.raw.1.zip, E-MTAB-2388.raw.2.zip
Processed data (1)E-MTAB-2388.processed.1.zip
Array designA-GEOD-6476.adf.txt
Links