E-MTAB-2221 - Transcriptome analysis of Heterodera avenae two developmental stages

Status
Last updated on 27 January 2014, released on 27 January 2014
Organism
Heterodera avenae
Samples (2)
Protocols (4)
Description
The cereal cyst nematode (CCN, Heterodera avenae) is a major pest of wheat (Triticum spp) that reduces crop yields in many countries. Cyst nematodes are obligate sedentary endoparasites that reproduce by amphimixis. Here, we report the first transcriptome analysis of two parasitic stages of H. avenae.
Experiment types
RNA-seq of coding RNA, co-expression, growth condition design, strain or line design
Contact
Citation
De Novo Transcriptome Sequencing and Analysis of the Cereal Cyst Nematode, Heterodera avenae. Mukesh Kumar, Nagavara Prasad Gantasala, Tanmoy Roychowdhury, Prasoon Kumar Thakur, Prakash Banakar, Rohit N Shukla, Michael G. K. Jones and Uma Rao.
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-MTAB-2221.idf.txt
Sample and data relationshipE-MTAB-2221.sdrf.txt
Links