E-MTAB-2148 - ChIP-seq of sigma 70 in wild-type and hns mutant Escherichia coli K-12 MG1655

Status
Last updated on 15 December 2013, released on 15 December 2013
Organism
Escherichia coli
Samples (4)
Protocols (4)
Description
We mapped the genome-wide binding of sigma 70 in E. coli K-12 MG1655 and an hns mutant that is otherwise isogenic using ChIP coupled with deep sequencing (ChIP-seq). We show that intragenic binding of sigma 70 is increased in the hns mutant.
Experiment types
ChIP-seq, genotype design, in vivo
Contact
Citation
Widespread suppression of intragenic transcription initiation by H-NS. Singh, S.S., Singh, N., Bonocora, R.P., Fitzgerald, D.M., Wade, J.T. and Grainger, D.C.
MINSEQE
Exp. designProtocolsFactorsProcessedSeq. reads
Files
Investigation descriptionE-MTAB-2148.idf.txt
Sample and data relationshipE-MTAB-2148.sdrf.txt
Links