E-MTAB-2044 - ChIP-Seq of OCT4, NANOG, p300 in 3iL Human Embryonic Stem Cells

Released on 5 December 2013, last updated on 2 May 2014
Homo sapiens
Samples (2)
Protocols (5)
Human embryonic stem cells (hESCs) are isolated from the inner cell mass of the blastocysts. The pluripotent properties of hESCs enable the derivation of cell-types or tissues of different lineages for potential applications such as therapeutics discovery and regenerative medicine. Even though hESCs are pluripotent, differences have been observed when compared to the native pluripotent epiblast cells of the blastocyst. We use a chemical approach (3iL: 3 small molecule inhibitor and cytokine) to induce an expression signature that more closely resembles native pluripotent cells. This experiment is the transcription factor binding data of the study.
Experiment types
ChIP-seq, ChiP-seq, cell type comparison, in vitro
A LIF-dependent human pluripotent state with a distinctive regulatory circuitry. Yun-Shen Chan, Jonathan Goke, Jia-hui Ng, Xinyi Lu, Cheng-Peow Tan, Wei-Quan Tng, Zhong-Zhi Hong, Huck-Hui Ng.
Exp. designProtocolsVariablesProcessedSeq. reads
Investigation descriptionE-MTAB-2044.idf.txt
Sample and data relationshipE-MTAB-2044.sdrf.txt