E-MTAB-1941 - Transcription profiling by array of 9 different pig cardiocirculatory tissues

Status
Released on 30 April 2014, last updated on 3 June 2014
Organism
Sus scrofa
Samples (20)
Array (1)
Protocols (7)
Description
90K Combimatrix gene expression microarrays were composed by 17,048 replicated probes and 963 not replicated specific for the Ensembl (Ver. 56) Transcripts (protein coding + pseudogenes + retrotransposed elements), 11,363 replicated probes specific for the UniGene clusters (Ver. 38) of length comprised between 778 nt and 1,348 nt, and 28,790 single probes specific for the remaining UniGene clusters. These microarrays were used to study gene expression in 9 different pig tissues involved in the cardiocirculatory system (Left Atrium; Right Ventricle, Inferior Vena Cava, Superior Vena Cava, Ascending Aorta, Descending Aorta, Pulmonary Artery, Coronary Artery, Leaflet of Pulmonary Artery). Gene expression was correlated with the micro-RNA expression in the same tissues, also deposited at ArrayExpress under accession number E-MTAB-1938 (https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1938).
Experiment types
transcription profiling by array, co-expression, in vivo, organism part comparison
Contact
Citation
Systems Biology approach to dissect the complexity of regulatory networks in S. scrofa Cardiocirculatory System. Paolo Martini.
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-MTAB-1941.idf.txt
Sample and data relationshipE-MTAB-1941.sdrf.txt
Raw data (1)E-MTAB-1941.raw.1.zip
Processed data (1)E-MTAB-1941.processed.1.zip
Array designA-MEXP-2351.adf.txt
Links