E-MTAB-1916 - Transcription profiling by array of Escherichia coli K-12 strain MG1655 and MG1655 delta araC grown either in the absence or the presence of arabinose

Status
Released on 19 October 2013, last updated on 2 May 2014
Organism
Escherichia coli K-12
Samples (6)
Array (1)
Protocols (8)
Description
AraC is an Escherichia coli transcription factor that regulates genes in response to the presence/absence of arabinose. We used transcription profiling to determine RNA levels in Escherichia coli K-12 strain MG1655 and MG1655 delta araC grown either in the absence or the presence of arabinose. Thus, we identified known and novel AraC-regulated genes. Data presented here are raw .CEL files as well as fully analysed data using GeneSpring
Experiment types
transcription profiling by array, co-expression, growth condition design, in vivo, strain or line design
Contact
Citation
Genome-Scale Analyses of Escherichia coli and Salmonella enterica AraC Reveal Noncanonical Targets and an Expanded Core Regulon. Anne M. Stringer, Salvatore Currenti, Richard P. Bonocora, Catherine Baranowski, Brianna L. Petrone, Michael J. Palumbo, Andrew E. Reilly, Zhen Zhang, Ivan Erill, Joseph T. Wade. Journal of Bacteriology  (2014), Europe PMC 24272778
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-MTAB-1916.idf.txt
Sample and data relationshipE-MTAB-1916.sdrf.txt
Raw data (1)E-MTAB-1916.raw.1.zip
Processed data (1)E-MTAB-1916.processed.1.zip
Array designA-AFFY-56.adf.txt
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