E-MTAB-1897 - Transcriptome profiling of switchgrass leaf grown under heat stress

Status
Released on 14 January 2014, last updated on 2 May 2014
Organism
Panicum virgaturm
Samples (4)
Array (1)
Protocols (7)
Description
In this study we were interested in identifying the gene networks that are responsive to chronic heat treatment in a switchgrass cultivar that is widely grown in the south-western USA and where 38C day temperatures have been reported for more than 100 days in the recent years. Switchgrass Alamo plants were subjected to chronic heat stress for 50 days (38 C/30C; day/night) or maintained under optimal conditions (28C/20C). Leaves were collected at the end of the heat regime for transcriptome analysis.
Experiment types
transcription profiling by array, co-expression, growth condition, replicate
Contact
Citation
Transcriptome analysis of heat stress response in switchgrass (Panicum virgatum L.). Li YF, Wang Y, Tang Y, Kakani VG, Mahalingam R. BMC Plant Biol 13:153 (2013), Europe PMC 24093800
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-MTAB-1897.idf.txt
Sample and data relationshipE-MTAB-1897.sdrf.txt
Raw data (1)E-MTAB-1897.raw.1.zip
Processed data (1)E-MTAB-1897.processed.1.zip
Array designA-AFFY-194.adf.txt
Links