E-MTAB-1884 - ChIP-seq of 14 human lymphoblastoid cell lines from the 1000 Genomes sample set

Status
Released on 17 October 2013, last updated on 3 June 2014
Organism
Homo sapiens
Samples (14)
Protocols (9)
Description
ChIP-seq experiment of 14 human lymphoblastoid cell line samples from the 1000 Genomes sample set (http://www.1000genomes.org/). Dataset includes two parent-daughter trios (CEU and YRI populations) and additional eight unrelated individuals (CEU population). This accession contains raw and mapped ChIP-seq read data, other assays in this study are available under accession E-MTAB-1883 (RNA-seq, https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1883) and E-MTAB-1885 (GRO-seq, https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1885/).
Experiment types
ChIP-seq, operator variation design, population based design
Contacts
Citation
Coordinated Effects of Sequence Variation on DNA Binding, Chromatin Structure, and Transcription. Kilpinen H, Waszak SM, Gschwind AR, Raghav SK, Witwicki RM, Orioli A, Migliavacca E, Wiederkehr M, Gutierrez-Arcelus M, Panousis N, Yurovsky A, Lappalainen T, Romano-Palumbo L, Planchon A, Bielser D, Bryois J, Padioleau I, Udin G, Thurnheer S, Hacker D, Core LJ, Lis JT, Hernandez N, Reymond A, Deplancke B, Dermitzakis ET. Science  (2013), Europe PMC 24136355
MINSEQE
Exp. designProtocolsFactorsProcessedSeq. reads
Files
Investigation descriptionE-MTAB-1884.idf.txt
Sample and data relationshipE-MTAB-1884.sdrf.txt
Processed data (117)Click to browse processed data
Links