E-MTAB-1859 - Transcriptome analysis of the newly described centipede Eupolybothrus cavernicolus sp.n

Status
Released on 28 October 2013, last updated on 2 May 2014
Organism
Eupolybothrus sp. PS-2013
Samples (1)
Protocols (5)
Description
We compiled the transcriptome by extracting mRNA, reverse transcription and Illumina sequencing, followed by assembly and annotation by comparison with public databases (including; Nr, SwissProt and COG). Quantitative data on the transcription abundance of each putative protein sequence is provided as assesed by the SOAPdenovo_trans assembly tool.
Experiment type
RNA-seq of coding RNA 
Contacts
Chris I Hunter <chris@gigasciencejournal.com>, Alexander M Weigand, Ana Komericki, Daniel Mietchen, Dave M Roberts, David Porco, Jeroen Hostens, Lyubomir D Penev <lyubo.penev@gmail.com>, Marzio Zapparoli, Nesrine Akkari, Pavel E Stoev <pavel.e.stoev@gmail.com>, Shanlin Liu <liushanlin@genomics.org.cn>, Teodor Georgiev, Vincent S Smith, Xin Zhou <xinzhou@genomics.org.cn>
Citations
Eupolybothrus cavernicolus Komericki & Stoev sp. n. (Chilopoda: Lithobiomorpha: Lithobiidae): the first eukaryotic species description combining transcriptomic, DNA barcoding and micro-CT imaging data. Stoev P, Komerički A, Akkari N, Liu S, Zhou X, Weigand AM, Hostens J, Hunter CI, Edmunds SC, Porco D, Zapparoli M, Georgiev T, Mietchen D, Roberts D, Faulwetter S, Smith V, Penev L. :e1013 (2013), Europe PMC 24723752
Eupolybothrus cavernicolus Komerički & Stoev sp. n. (Chilopoda: Lithobiomorpha: Lithobiidae): the first eukaryotic species description, combining transcriptomic, DNA barcoding, and micro-CT imaging data. Stoev P, Komerički A, Akkari N, Shanlin Liu, Xin Zhou, Weigand AM, Hostens J, Hunter CI, Edmunds SC, Porco D, Zapparoli M, Georgiev T, Mietchen D, Roberts D, Smith V, Penev L. Biodiversity Data Journal 1:e1013 (2013)
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-MTAB-1859.idf.txt
Sample and data relationshipE-MTAB-1859.sdrf.txt
Processed data (1)E-MTAB-1859.processed.1.zip
Links