E-MTAB-1793 - Transcription profiling by array of vdh1 mutant and wild type samples of soilborne fungus Verticillium dahliae

Status
Released on 6 September 2013, last updated on 3 June 2014
Organism
Verticillium dahliae
Samples (9)
Array (1)
Protocols (6)
Description
The soilborne fungus, Verticillium dahliae, causes Verticillium wilt disease in plants. Verticillium wilt is difficult to control since V. dahliae is capable of persisting in the soil for 10 to15 years as melanized microsclerotia, rendering crop rotation strategies for disease control ineffective. Microsclerotia of V. dahliae overwinter and germinate to produce infectious hyphae that give rise to primary infections. Consequentially, microsclerotia formation, maintenance, and germination are critically important processes in the disease cycle of V. dahliae.
Experiment types
transcription profiling by array, co-expression, genotype design, in vitro
Contact
Citation
RNA-seq analyses of gene expression in the microsclerotia of Verticillium dahliae. Dechassa Duressa, Amy Anchieta, Dongquan Chen, Anna Klimes, Maria Garcia-Pedrajas, Katherine F. Dobinson, Steven J. Klosterman.
MIAME
PlatformsProtocolsFactorsProcessedRaw
Files
Investigation descriptionE-MTAB-1793.idf.txt
Sample and data relationshipE-MTAB-1793.sdrf.txt
Raw data (1)E-MTAB-1793.raw.1.zip
Processed data (1)E-MTAB-1793.processed.1.zip
Array designA-MEXP-2325.adf.txt
Links