E-MTAB-1764 - Transcription profiling by array of mouse EML cell line transfected with EGR2 wt gene, 2 mutated forms (E356K and H384N) and controls with an empty vector

Status
Last updated on 18 June 2014, released on 18 June 2014
Organism
Mus musculus
Samples (13)
Array (1)
Protocols (6)
Description
Chronic lymphocytic leukemia (CLL), the most frequent adult leukemia in western countries, is a clonal accumulation of mature B-lymphocytes and its natural history is yet unclear. By using sequencing and cellular biology approaches on a cohort of CLL patient samples, we show here that acquired CLL mutations are observed in hematopoietic multipotent progenitor fractions in the majority of patients. These early CLL mutations include recurrent inactivating mutations in NFKBIE (10.7%) and missense mutations in BRAF (3.6%) and EGR2 (8.3%). Functional analyses demonstrated that BRAF-G469R affects lymphoid differentiation and transforms the T-cell lineage in vivo. In addition, the EGR2 recurrent mutations were associated with transcriptional activation of EGR2 target genes in patients and cell cycle abnormality in cellular model. Our findings indicate that CLL may develop from an initial infra-clinic, pre-leukemic phase affecting immature hematopoietic cells. The present study concerns gene expression of mouse EML cell line transfected by EGR2 wt gene and 2 mutated forms (E356K and H384N) and controls with the empty vector. Gene expression was performed in single color on Agilent 8x60K Mouse Genome array (design 028005).
Experiment types
transcription profiling by array, genetic modification design, genotyping design, replicate design
Contacts
Citation
Acquired initiating mutations in early hematopoietic cells of CLL patients. Damm F, Mylonas E, Cosson A, Yoshida K, Della Valle V, Mouly E, Diop M, Scourzic L, Shiraishi Y, Chiba K, Tanaka H, Miyano S, Kikushige Y, Davi F, Lambert J, Gautheret D, Merle-Beral H, Sutton L, Dessen P, Solary E, Akashi K, Vainchenker W, Mercher T, Droin N, Ogawa S, Nguyen-Khac F, Bernard OA. Cancer Discov.  (2014)
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-MTAB-1764.idf.txt
Sample and data relationshipE-MTAB-1764.sdrf.txt
Raw data (1)E-MTAB-1764.raw.1.zip
Processed data (1)E-MTAB-1764.processed.1.zip
Array designA-MEXP-2171.adf.txt
Links