E-MTAB-1753 - Comparative genomic hybridization by array of early passage melanoma cell lines (LM-MEL-series) and single-cell sub-clone of these cell lines to study clonal heterogeneity in melanoma

Status
Released on 8 September 2013, last updated on 3 June 2014
Organism
Homo sapiens
Samples (36)
Arrays (2)
Protocols (7)
Description
Genetic heterogeneity is an important feature of solid tumors, however it is often assumed that most cancer cell lines are genetically homogeneous. A disparity in genetic complexity between cell lines and the disease they model could result in problems such as in vitro preclinical experiments overstating the effectiveness of putative therapeutics. We therefore derived clonal sublines by single cell cloning of in house derived early passage melanoma cell lines (LM-MEL-series), and compared their genomes to each other and the parental cell line using Illumina 610-Quad SNP arrays.
Experiment types
transcription profiling by array, comparative genomic hybridization by array, cell type comparison, co-expression, comparative genome hybridization, ex vivo, in vitro
Contact
Citation
Intratumoral genetic heterogeneity in metastatic melanoma is accompanied by variation in malignant behaviors. Anaka M, Hudson C, Lo PH, Do H, Caballero OL, Davis ID, Dobrovic A, Cebon J, Behren A. BMC Med Genomics 6:40 (2013), Europe PMC 24119551
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-MTAB-1753.idf.txt
Sample and data relationshipE-MTAB-1753.sdrf.txt
Raw data (2)E-MTAB-1753.raw.1.zip, E-MTAB-1753.raw.2.zip
Array designsA-GEOD-8887.adf.txt, A-MEXP-1171.adf.txt
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