E-MTAB-1728 - RNA-seq read alignment evaluation
Released on 15 July 2013, last updated on 2 May 2014
Homo sapiens, Mus musculus
To assess the performance of read mapping software for RNA-seq, 26 spliced alignment protocols based on 11 programs and pipelines (BAGET, GEM, GSNAP, GSTRUCT, MapSplice, PALMapper, PASS, ReadsMap, SMALT, STAR and TopHat) were applied to four human and mouse transcriptome data sets.
RNA-seq of coding RNA, co-expression, reference, software variation, species
Assessment of transcript reconstruction methods for RNA-seq. Tamara Steijger, Josep F. Abril, Pär G. Engström, Felix Kokocinski, RGASP Consortium, Tim J. Hubbard, Roderic Guigó, Jennifer Harrow, Paul Bertone. Nat Methods 10(12):1177–1184 (2013), Europe PMC 24185836